View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5544-Insertion-5 (Length: 487)

Name: NF5544-Insertion-5
Description: NF5544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5544-Insertion-5
NF5544-Insertion-5
[»] chr5 (11 HSPs)
chr5 (10-487)||(35970248-35970726)
chr5 (299-487)||(9212570-9212758)
chr5 (27-260)||(9212329-9212563)
chr5 (27-352)||(9364885-9365211)
chr5 (27-267)||(9371322-9371561)
chr5 (33-189)||(9290790-9290950)
chr5 (18-180)||(12558721-12558885)
chr5 (90-185)||(9333128-9333223)
chr5 (93-185)||(9306945-9307037)
chr5 (96-170)||(37897093-37897167)
chr5 (127-185)||(9354011-9354069)
[»] chr6 (2 HSPs)
chr6 (103-267)||(24694436-24694600)
chr6 (29-87)||(24694853-24694911)
[»] chr7 (1 HSPs)
chr7 (32-365)||(6600816-6601152)
[»] chr8 (3 HSPs)
chr8 (27-184)||(31857545-31857704)
chr8 (96-185)||(44916579-44916668)
chr8 (87-178)||(19292851-19292942)
[»] chr4 (6 HSPs)
chr4 (91-190)||(40770946-40771045)
chr4 (91-185)||(38168858-38168952)
chr4 (91-185)||(40765081-40765175)
chr4 (94-190)||(40777660-40777756)
chr4 (92-185)||(37088297-37088390)
chr4 (87-178)||(54786817-54786908)
[»] chr3 (1 HSPs)
chr3 (31-172)||(48611282-48611427)


Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 10 - 487
Target Start/End: Original strand, 35970248 - 35970726
Alignment:
Q  10 atgtaatgtttgaaaacaaattgtaggactttaccccaaaagaagtccttccagaaattctaaaaggcttgagttgcctca-gcctaagagggggtttgg 108  Q
    ||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  35970248 atgtaatgtttgaactaaaattgtaggactttaccccaaaaggagtccttccagaaattctcgaaggcttgagttgcctcaagcctaagagggggtttgg 35970347  T
Q  109 aaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatggtttcaattactcaacaaacctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35970348 aaatagttttcaaccagcaatagacgcgcctcggttataacctcattagctgcgtcattgccccaagcgcaaagatggtttcaactactcaacaaacctt 35970447  T
Q  209 gtttttatatagacttcaaccacaccttgtgtctcatatgggcggtgtgggattaaatatgccttacttgaaaatttaagtgagcactcgccacactttt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35970448 gtttttatatagacttcaaccacaccttgtgtctcatatgggcgatgtgggattaaatatgccttacttgaaaatttaagtgagcactcgccacactttt 35970547  T
Q  309 gccttcaacacatgtctattataccttattcaacaacctttagactgaacaaaaacagtttaacatcaagcttatcatgaatttacatgtaacgaaatgg 408  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35970548 gccttcaacacatgtccattataccttattcaacaacctttagactgaacaaaaacagtttaacatcaagcttatcatgaatttacatgtaacgaaatgg 35970647  T
Q  409 tagattgtaagagtctgatgataatgaaagaaaatatagaagaaaaaaccatgagcttcagtgctgcaacgctgtccat 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35970648 tagattgtaagagtctgatgataatgaaagaaaatatagaagaaaaaaccatgagcttcagtgctgcaacgctgtccat 35970726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 299 - 487
Target Start/End: Original strand, 9212570 - 9212758
Alignment:
Q  299 ccacacttttgccttcaacacatgtctattataccttattcaacaacctttagactgaacaaaaacagtttaacatcaagcttatcatgaatttacatgt 398  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9212570 ccacacttttgccttcaacacatatccattataccttattcaacaacctttagactgaacaaaaacagtttaacatcaagctaatcatgaatttacatgt 9212669  T
Q  399 aacgaaatggtagattgtaagagtctgatgataatgaaagaaaatatagaagaaaaaaccatgagcttcagtgctgcaacgctgtccat 487  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9212670 aacgaaaaggtagattgtaagagtcagatgataatgaaaggaaatatagaagaaaaaaccatgagcttcagtgctgcaacgctgtccat 9212758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 9212329 - 9212563
Alignment:
Q  27 aaattgtaggactttaccccaaaagaagtccttccagaaattctaaaaggcttgagttgcctca-gcctaagagggggtttggaaatagttttcaaccag 125  Q
    ||||||||||||||||||||||| | ||||||||||||||||||  ||||||||||||||| || ||| |||||||||||||||||||||||||||||||    
T  9212329 aaattgtaggactttaccccaaagggagtccttccagaaattctcgaaggcttgagttgccccaagcccaagagggggtttggaaatagttttcaaccag 9212428  T
Q  126 caatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatggtttcaattactcaacaaaccttgtttttatatagacttc 225  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | | || | |||| ||||||||||||||||||||||    
T  9212429 caatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaaagatggttcctaatagtgaacagaccttgtttttatatagacttc 9212528  T
Q  226 aaccacaccttgtgtctcatatgggcggtgtggga 260  Q
    ||||||||||||| ||| |||  |||| |||||||    
T  9212529 aaccacaccttgtttctgatacaggcgatgtggga 9212563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 27 - 352
Target Start/End: Complemental strand, 9365211 - 9364885
Alignment:
Q  27 aaattgtaggactttaccccaaaagaagtccttccagaaattctaaaaggcttgagttgcc-tcagcctaagagggggtttggaaatagttttcaaccag 125  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||| || | |||||||||| |||||||||||||||||||||||||    
T  9365211 aaattgtaggactttaccccaaaaggagtccttccagaaattctcaaaggcttaagttaccctaagcctaagagtgggtttggaaatagttttcaaccag 9365112  T
Q  126 caatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatggtttcaattactcaacaaaccttgtttttatatagacttc 225  Q
    ||||||||||||||||||||  |||||||| ||||| |||||||||||||||||||||||||||| | | ||||||    | ||||||||||||||||||    
T  9365111 caatagacgcgcctcggttagtacctcattagctgcatcattgccccaagcgcaaagatggtttctaatgctcaacttcacatgtttttatatagacttc 9365012  T
Q  226 aaccacaccttgtgtctcatatgggcggtgtgggattaaatatgccttacttgaaaatttaagtgagcactcgccacacttttgccttcaacacatgtct 325  Q
    || ||||||| || ||||||||||||| ||||||| |||||| ||   ||||| |||||| ||| | | |||||||| | |||||||||||||  ||||     
T  9365011 aatcacacctggtttctcatatgggcgatgtgggactaaatacgcaagacttggaaattttagtcaccgctcgccacgcctttgccttcaacaagtgtcc 9364912  T
Q  326 attataccttattcaacaacctttaga 352  Q
    ||||| | ||  ||||||| |||||||    
T  9364911 attattcattcatcaacaatctttaga 9364885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 9371561 - 9371322
Alignment:
Q  27 aaattgtaggactttaccccaaaagaagtccttccagaaattctaaaaggcttgagttgcc-tcagcctaagagggggtttggaaatagttttcaaccag 125  Q
    ||||||||||| ||||||||||| | |||||||||| ||||||| |||||||| || | || | |||||| |||||||||||||||||||||||||||||    
T  9371561 aaattgtaggattttaccccaaagggagtccttccaaaaattctcaaaggcttaagctaccctaagccta-gagggggtttggaaatagttttcaaccag 9371463  T
Q  126 caatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatggtttcaattactcaacaaaccttgtttttatatagacttc 225  Q
    ||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| | |  |||||    | |||||| ||||||| |||    
T  9371462 caatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagatggtttctactgttcaacttcacatgttttaatatagatttc 9371363  T
Q  226 aaccacaccttgtgtctcatatgggcggtgtgggattaaata 267  Q
    ||||||||||||| ||||||| ||||| ||||||| ||||||    
T  9371362 aaccacaccttgtttctcata-gggcgatgtgggactaaata 9371322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 9290790 - 9290950
Alignment:
Q  33 taggactttaccccaaaa--gaagtccttccagaaattctaaaaggcttgagttgc-ctc-agcctaagagggggtttggaaatagttttcaaccagcaa 128  Q
    |||||||||||||| |||  | ||||||||||||||||||  ||| || ||||||  ||| || ||||||| ||||||||||||||||||||||||||||    
T  9290790 taggactttacccctaaaagggagtccttccagaaattctcgaagactagagttgaactctagtctaagagagggtttggaaatagttttcaaccagcaa 9290889  T
Q  129 tagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatggttt 189  Q
    | |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  9290890 ttgacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagatggttt 9290950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 12558885 - 12558721
Alignment:
Q  18 tttgaaaacaaattgtaggactttaccccaaaagaagtccttccagaaattctaaaaggcttgagttg--cctcagcctaagagggggtttggaaatagt 115  Q
    |||||||| ||||||||||||||||||||||| | | ||||||||| |||||| ||||||||||||||  ||  || |||||||||| |  |||||||||    
T  12558885 tttgaaaaaaaattgtaggactttaccccaaagggaatccttccaggaattctcaaaggcttgagttggacccaagtctaagaggggatcaggaaatagt 12558786  T
Q  116 tttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaa 180  Q
    |||||||||||||||||| ||||||||||| ||||||| | | ||||||||||||||||| ||||    
T  12558785 tttcaaccagcaatagacacgcctcggttagaacctcactagatgcgtcattgccccaagtgcaa 12558721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 9333223 - 9333128
Alignment:
Q  90 agcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| | ||||||||||||||||||| | |||||||    
T  9333223 agcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcagttaattcctcactagctgcgtcattgccccaagtgaaaagatg 9333128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 9307037 - 9306945
Alignment:
Q  93 ctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatg 185  Q
    ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||  |||||| | ||||| |||||| ||||||| ||||||||    
T  9307037 ctaagagggggtttgaaaattgttttcaaccagcaatagacgtgcctcggttaatacctcactagctgcatcattggcccaagcacaaagatg 9306945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 37897093 - 37897167
Alignment:
Q  96 agagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgcc 170  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||| ||||| ||||| || ||| ||||||||||    
T  37897093 agagagggtttggaaatagtttccaaccagcaatagacgcggctcagttattacctcgttagctacgtcattgcc 37897167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 9354069 - 9354011
Alignment:
Q  127 aatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatg 185  Q
    |||||||||||||| ||||  |||||| | |||||||||||||||||||||||||||||    
T  9354069 aatagacgcgcctcagttaatacctcactagctgcgtcattgccccaagcgcaaagatg 9354011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 103 - 267
Target Start/End: Complemental strand, 24694600 - 24694436
Alignment:
Q  103 gtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatggtttcaattactcaaca 202  Q
    ||||| |||||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||    
T  24694600 gtttgaaaatagttttcaaccagcaatagacgtgcctcggttagaacctcattagttgcgtcattgccccaagcgcaaagatggtttcaattacgcaaca 24694501  T
Q  203 aaccttgtttttatatagacttcaaccacaccttgtgtctcatatgggcggtgtgggattaaata 267  Q
    |||||||||||| | |||||||||||||| |||||||||||||||||||| |||||||| |||||    
T  24694500 aaccttgtttttctgtagacttcaaccacgccttgtgtctcatatgggcgatgtgggatcaaata 24694436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 24694911 - 24694853
Alignment:
Q  29 attgtaggactttaccccaaaagaagtccttccagaaattctaaaaggcttgagttgcc 87  Q
    |||||||||||||||| |||| | ||||||| |||||||||| ||||||||||||||||    
T  24694911 attgtaggactttacctcaaagggagtcctttcagaaattctcaaaggcttgagttgcc 24694853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 32 - 365
Target Start/End: Original strand, 6600816 - 6601152
Alignment:
Q  32 gtaggactttaccccaaaagaagtccttccagaaattctaaaaggcttgagttgcc-tcagcctaagagggggtttggaaatagttttcaaccagcaata 130  Q
    |||| |||||||||| || | |||||||||||||||||| |||||||| |||| || | |||||||||||||||||||||||||||||||||||||||||    
T  6600816 gtagaactttacccctaagggagtccttccagaaattctcaaaggcttaagtttccctaagcctaagagggggtttggaaatagttttcaaccagcaata 6600915  T
Q  131 gacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatggtttcaattactcaacaaaccttgtttttatatagacttcaacca 230  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |    ||| || |  ||||||| ||||| ||||||| ||     
T  6600916 gacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaaagatggtttaagcatctccactatgcttgtttatatatggacttcagcct 6601015  T
Q  231 caccttgtgtctcatatgggcggtgtgggattaaatatgccttactt-gaaaattta-agtgagcactcgccacacttttgccttcaacacatgtctatt 328  Q
    || ||| | ||  ||  ||||| |||||||  ||||||||   | || |||| | || ||| | |||| ||||| ||||||||||||| ||| ||| |||    
T  6601016 catcttttttcagatccgggcgatgtgggacaaaatatgcagaatttcgaaactatatagtcaccactagccacgcttttgccttcaatacaagtccatt 6601115  T
Q  329 ataccttattcaacaacctttagactgaacaaaaaca 365  Q
    |||||| ||||||||| |||| |||| ||||||||||    
T  6601116 atacctcattcaacaatcttttgacttaacaaaaaca 6601152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 31857545 - 31857704
Alignment:
Q  27 aaattgtaggactttaccccaaaagaagtccttccagaaattctaaaaggcttgagttgc-ctcag-cctaagagggggtttggaaatagttttcaacca 124  Q
    ||||||||||||||||||||||| | ||||||||||||||||||  || || | ||||   ||||| |||||||||||||||||||||||||||||||||    
T  31857545 aaattgtaggactttaccccaaagggagtccttccagaaattctcgaaagcctaagttaaactcaggcctaagagggggtttggaaatagttttcaacca 31857644  T
Q  125 gcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagat 184  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  31857645 gcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaaagat 31857704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 44916579 - 44916668
Alignment:
Q  96 agagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||||||||||||||||    
T  44916579 agagggggtttggaaatagttttcaaccagcaatagacgcgcctcagttattacctcattagctacgtcattgccccaagcgcaaagatg 44916668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 19292851 - 19292942
Alignment:
Q  87 ctcagcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgc 178  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||| ||| ||||||||||||||||||    
T  19292851 ctcaggctcagagggggtttggaaatagttttcaaccagcaatagacgcgcctcagttatttcctcattagctacgtcattgccccaagcgc 19292942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 40770946 - 40771045
Alignment:
Q  91 gcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatggtttc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||    
T  40770946 gcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaaagatgctttc 40771045  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 38168952 - 38168858
Alignment:
Q  91 gcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  38168952 gcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaaagatg 38168858  T

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Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 40765081 - 40765175
Alignment:
Q  91 gcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  40765081 gcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaaagatg 40765175  T

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Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 40777660 - 40777756
Alignment:
Q  94 taagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatggtttc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||    
T  40777660 taagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaaagatgctttc 40777756  T

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Target: chr4; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 37088297 - 37088390
Alignment:
Q  92 cctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgcaaagatg 185  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||||||||||||    
T  37088297 cctaagagggggtttggaaatagttttcaaccagcaatagacgcacctcggttggaacctcattagctgcgtcattgccccaagcgcaaagatg 37088390  T

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Target: chr4; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 54786817 - 54786908
Alignment:
Q  87 ctcagcctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcatttgctgcgtcattgccccaagcgc 178  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||| ||| ||||||||||||||||||    
T  54786817 ctcaggctcagagggggtttggaaatagttttcaaccagcaatagacgcgcctcagttatttcctcattagctacgtcattgccccaagcgc 54786908  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 48611282 - 48611427
Alignment:
Q  31 tgtaggactttaccccaaaagaagtccttccagaaattctaaaaggcttgagttg-cctcagcctaagagggggtttggaaatagttttcaac---cagc 126  Q
    |||||||||||||   ||| | ||||||||||| |||||| |||| ||||||||| | | ||| ||||| ||| |||| ||||||||||||||   ||||    
T  48611282 tgtaggactttactttaaagggagtccttccagtaattctcaaagacttgagttgtcttaagcttaagaagggatttgaaaatagttttcaaccagcagc 48611381  T
Q  127 aatagacgcgcctcggttataacctcatttgctgcgtcattgcccc 172  Q
    ||||||| ||||| ||||| || ||| || |||| |||||||||||    
T  48611382 aatagacacgccttggttaaaagctcgttagctgtgtcattgcccc 48611427  T

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