View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5544-Insertion-7 (Length: 278)
Name: NF5544-Insertion-7
Description: NF5544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5544-Insertion-7 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 7875970 - 7876217
Alignment:
| Q |
32 |
gaaatatcttcctatggcgaa-tcttttccataatatcatttttcctgattcaactgtatttatctgtatctttgtcgttttgtagatgtctgaaagagg |
130 |
Q |
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| T |
7875970 |
gaaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaagaag |
7876069 |
T |
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| Q |
131 |
ctgctgctgtaaagaaacttggccatcactacattcccaaatttcattaacatttagaaggaagctctgaccttcaaaattgtaactcatttgatttcaa |
230 |
Q |
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| T |
7876070 |
ctgccgctgtaaagaaacttggccatcactacactcccaaatttcattaacatttagaaggaagctctgaccttcaaaattgtaactcatttgatttcaa |
7876169 |
T |
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| Q |
231 |
gtggctttggcgattgttgttttaccaaccccgtttgtctcccgtacc |
278 |
Q |
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| T |
7876170 |
gtggctttggcgattgttgttttaccaaccccatttgtcccccatacc |
7876217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 7890770 - 7890836
Alignment:
| Q |
62 |
taatatcatttttcctgattcaactgtatttatctgtatctttgtcgttttgtagatgtctgaaaga |
128 |
Q |
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| T |
7890770 |
taatatcttctttcctgattcaactgtatctatatgtatctttgttgttttgcagatgtctaaaaga |
7890836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 7888678 - 7888766
Alignment:
| Q |
62 |
taatatcatttttcctgattcaactgtatttatctgtatctttgtcgttttgtagatgtctgaaagaggctgctgctgtaaagaaactt |
150 |
Q |
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| T |
7888678 |
taatatcttttttcctgattcaactgagtctatctttatctttgtagttttgcagatgtcaaaaagaagtcgttgctgtaaagaaactt |
7888766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 7890915 - 7890973
Alignment:
| Q |
204 |
tcaaaattgtaactcatttgatttcaagtggctttggcgattgttgttttaccaacccc |
262 |
Q |
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| T |
7890915 |
tcaaaagtgaaactcatttgattataagtggctttagcaattattgttttaccaacccc |
7890973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 34735427 - 34735491
Alignment:
| Q |
63 |
aatatcatttttcctgattcaactgtatttatctgtatctttgtcgttttgtagatgtctgaaag |
127 |
Q |
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| T |
34735427 |
aatatcatttttcctgattcaactgtatctatctttatttttgttgttttgtagatatcagaaag |
34735491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 34727670 - 34727734
Alignment:
| Q |
63 |
aatatcatttttcctgattcaactgtatttatctgtatctttgtcgttttgtagatgtctgaaag |
127 |
Q |
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| T |
34727670 |
aatatcatttttcctgattcaactgtttctatctttatttttgttgttttgtagatatcagaaag |
34727734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 34730828 - 34730892
Alignment:
| Q |
63 |
aatatcatttttcctgattcaactgtatttatctgtatctttgtcgttttgtagatgtctgaaag |
127 |
Q |
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| T |
34730828 |
aatatcatttttcctgattcaactgtttctatctttatttttgttgttttgtagatatcagaaag |
34730892 |
T |
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