View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5544_high_5 (Length: 385)
Name: NF5544_high_5
Description: NF5544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5544_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 367
Target Start/End: Original strand, 9836621 - 9836975
Alignment:
| Q |
13 |
catcaaaggattaaaaaccgagcaatataatggacctctcctctctacacaccatgcaatagcaataaccattattcccaaagccacaattccctgaaca |
112 |
Q |
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| T |
9836621 |
catcaaaggattaaaaaccgagcaatataatggacctctcctctctacacaccatgcaatagcaataaccattattcccgaggccacaattccctgaaca |
9836720 |
T |
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| Q |
113 |
aacaataacaccaattaataataactaacnnnnnnnttatacgaattgcaagttaagcaattagtaacggttagcataccgaatataatgcagttagtaa |
212 |
Q |
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| T |
9836721 |
gacaataacaccaattaataataactaacaaaaaaattatacaaattgcaagttaagtaattagtaacggttagcataccgaatataatgcagttagtaa |
9836820 |
T |
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| Q |
213 |
cctaatattccaacttaatctccattggctccaatccttctcagcacaaagggcaaaaccggtggattgaattgcccccattaaggacatcaatgatgta |
312 |
Q |
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| T |
9836821 |
cctaatattccaacctaatctccattggctccaatccttctcagcacaaagggcaaaaccggtggattgaattgcccccattaaggacatcaatgatgta |
9836920 |
T |
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| Q |
313 |
cttgaataatgtccttggtattctttgctcatcttagcctatttatcaacgatgt |
367 |
Q |
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| T |
9836921 |
cttgaataatgtccttggtattctttgctcatcttagcctatttatcaacgatgt |
9836975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 232 - 352
Target Start/End: Original strand, 1225449 - 1225569
Alignment:
| Q |
232 |
ctccattggctccaatccttctcagcacaaagggcaaaaccggtggattgaattgcccccattaaggacatcaatgatgtacttgaataatgtccttggt |
331 |
Q |
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| T |
1225449 |
ctccattggctcaaatccttctcaacacaaagggcaaaaagagttgcttgaattgcccccattaaagacatcaatgctgtacttgaataatgtccttggt |
1225548 |
T |
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| Q |
332 |
attctttgctcatcttagcct |
352 |
Q |
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| T |
1225549 |
actctttgctcatcttagcct |
1225569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 355
Target Start/End: Original strand, 1214188 - 1214336
Alignment:
| Q |
207 |
tagtaacctaatattccaacttaatctccattggctccaatccttctcagcacaaagggcaaaaccggtggattgaattgcccccattaaggacatcaat |
306 |
Q |
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||||| ||| |||||||||| || |||||||||||||||| | ||| ||||||| ||||| | |||| ||| ||||| |||||| ||||| || |
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| T |
1214188 |
tagtagcctgatattccaacccaacttccattggctccaatctctttcaacacaaagaccaaaagcagtggcttgtattgctcccattgtagacattaaa |
1214287 |
T |
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| Q |
307 |
gatgtacttgaataatgtccttggtattctttgctcatcttagcctatt |
355 |
Q |
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| T |
1214288 |
gctgtacttgagtaatgacttggatattctttgctcatcttagcctatt |
1214336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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