View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5544_high_7 (Length: 292)
Name: NF5544_high_7
Description: NF5544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5544_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 275
Target Start/End: Original strand, 1036286 - 1036569
Alignment:
| Q |
4 |
atgtcgaagaatatggttgggtccagcgtaatgagtctaactccaacaatacgat------------aaatcttggttgagaaagatttttgcatttagt |
91 |
Q |
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| T |
1036286 |
atgtcgaccaatagggttgggtccagcggaacgagtctaactccaacaatacgatgaacccatgtataaatcttggttgagaaagatttttgcatttagt |
1036385 |
T |
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| Q |
92 |
gtataacacattttgaataagattttaaaaaatgaatgtaagaacaactattgactatcttataaattgagacctagtttgctacaatattttttaaact |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036386 |
gtataacacattttgaataagattttaaaaaatgaatgtaagaacaactattgactatcttataaattgagacctagtttgctacaatattttttaaact |
1036485 |
T |
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| Q |
192 |
tggtatattttttgaaaaattcaccataaaaatttaatccacaatttcttaactatcagattaaaatcagacaaacattcaagc |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036486 |
tggtatattttttgaaaaattcaccataaaaatttaatctacaatttcttaactatcagattaaaatcagacaaacattcaagc |
1036569 |
T |
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