View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5544_low_10 (Length: 240)
Name: NF5544_low_10
Description: NF5544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5544_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 40852941 - 40852808
Alignment:
| Q |
92 |
aagagtgaggatgaagaagagtagtaatggtagcaagagaatgagaagaagagaagctattttgtttgtttctttcagttacgttataacgctttttcag |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40852941 |
aagagtgaggatgaagaagagtagtaatgggagcaagagaatgagaagaagagaagctattttgtttgtttctttcagttacgttataacgctttttcag |
40852842 |
T |
|
| Q |
192 |
tgagtgtgtgatttttgaaattggttgtgtttga |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
40852841 |
tgagtgtgtgatttttgaaattggttgtgtttga |
40852808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University