View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5544_low_2 (Length: 540)
Name: NF5544_low_2
Description: NF5544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5544_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 10727940 - 10728087
Alignment:
| Q |
14 |
aggcacggaggcatggaagtgttggtttcatattgtacttatgcttctaacttttgatggtttctcacatatttttacttttcgatgcgtgaggagagaa |
113 |
Q |
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| T |
10727940 |
aggcacggaggcatggaagtgttggtttcatattgtacttatgcttctaacttttgatggcttctcacatatttttacttttcgatgcgtgaggagagaa |
10728039 |
T |
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| Q |
114 |
gcagatgccagaaataggttaaacatttattgagtctgggtgatgtga |
161 |
Q |
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| T |
10728040 |
gcagatgccataaataggttaaacatttattgagtctgggtgatgtga |
10728087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 10732863 - 10733047
Alignment:
| Q |
28 |
ggaagtgttggtttcatattgtacttatgcttctaacttttgatggtttctcacatatttttacttttcgatgcgtgaggagagaagcagatgccagaaa |
127 |
Q |
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| T |
10732863 |
ggaagtgttgttttcacattttacttatgcttctaactttttatggtttctcacatgtttttattttttgatgcatgaggagagaagcagatgccagaaa |
10732962 |
T |
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| Q |
128 |
taggttaaacatttattgagtctgggtgatgtgagcttccaatttatattgtttttatttgtttctaaatgtgtgactcaaaatt |
212 |
Q |
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| T |
10732963 |
taggttaaatagttattgtgtctgggtgatgtggacttccaattagtattgtttttgtttctttttgaatgtgtggctcaaaatt |
10733047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 10729508 - 10729706
Alignment:
| Q |
22 |
aggcatggaagtgttggtttcatattgtacttatgcttctaacttttgatggtttctcacatatttttacttttcgatgcgtgaggagagaagcagatgc |
121 |
Q |
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| T |
10729508 |
aggcaaggaagtgttgttttcacaatttgcttatgcttctgacttttgatgacttctcacataattttattttttgatgcatgaggagagaagcagatgt |
10729607 |
T |
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| Q |
122 |
cagaaataggttaaacatttattgagtctgggtgatgtgagcttccaatttatattgtttttatttgtttctaaatgtgtgactcaaaattgcatataa |
220 |
Q |
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| T |
10729608 |
cagaaataggtcaagcatttattgactatgggtgatgtgggcttccaatttgcattgtttttgtttgtttctgaatgtgaggatcaaaattgcatataa |
10729706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 325 - 483
Target Start/End: Original strand, 32239782 - 32239940
Alignment:
| Q |
325 |
aaggagcctcatccgagggagatgacctactgccccctaatgccgtcgcaaaagacttgtgaggtatcgtggcaatctgagaagagtccataacattctg |
424 |
Q |
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| T |
32239782 |
aaggagcctcatttgagggagatgacttgcagccccctaaagccgccgcaaaggacttgtgaggttccgtgacaatctaaaaagagtccgtaacaaactg |
32239881 |
T |
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| Q |
425 |
agaagaggtagaaatccgtgtctgcgcatatggtgaaatggtaaccagagccgcaagtt |
483 |
Q |
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| T |
32239882 |
agaagatgtagaagtccatatatgcgcatatggtgaaatagtaaccggagccgcaagtt |
32239940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 10726919 - 10727036
Alignment:
| Q |
103 |
tgaggagagaagcagatgccagaaataggttaaacatttattgagtctgggtgatgtgagcttccaatttatattgtttttatttgtttctaaatgtgtg |
202 |
Q |
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| T |
10726919 |
tgaggagagaaacagatgctagaactaggttaagcatttattaggtttaggtgatgtgagcttccaatttgtatttattttgtttgtttctgaatgtgag |
10727018 |
T |
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| Q |
203 |
actcaaaattgcatataa |
220 |
Q |
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| T |
10727019 |
gctcaaaattgcatataa |
10727036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 10729977 - 10730132
Alignment:
| Q |
22 |
aggcatggaagtgttggtttcatattgtacttatgcttctaacttttgatggtttctcacatatttttactt-----ttcgatgcgtgaggagagaagca |
116 |
Q |
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| T |
10729977 |
aggcagggaagtgttgttttcacactttgcttatgcatctaacttttgatggcttctcacatatatttattaatttattttatgcatgaggagagaagca |
10730076 |
T |
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| Q |
117 |
gatgccagaaataggttaaacatttattgagtctgggtgatgtgagcttccaattt |
172 |
Q |
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| T |
10730077 |
gatgcaagaaataggttaaacatttattgggcctaggtgatgtggacttccaattt |
10730132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 10732480 - 10732595
Alignment:
| Q |
105 |
aggagagaagcagatgccagaaataggttaaacatttattgagtctgggtgatgtgagcttccaatttatattgtttttatttgtttctaaatgtgtgac |
204 |
Q |
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||||||||||| || | |||||||||||||| |||||||| || ||||||||||| ||||||||||| |||||||||| ||||| ||| |||||| | | |
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| T |
10732480 |
aggagagaagcggacgtcagaaataggttaagcatttatttagcgtgggtgatgtgggcttccaatttgtattgtttttgtttgtctctgaatgtgaggc |
10732579 |
T |
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| Q |
205 |
tcaaaattgcatataa |
220 |
Q |
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| T |
10732580 |
tcaaaatagcatataa |
10732595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 365 - 514
Target Start/End: Complemental strand, 21093131 - 21092984
Alignment:
| Q |
365 |
tgccgtcgcaaaagacttgtgaggtatcgtggcaatctgagaagagtccataacattctgagaagaggtagaaatccgtgtctgcgcatatggtgaaatg |
464 |
Q |
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| T |
21093131 |
tgccgccgcaaaagacttgtaaggtactgtaacaatctgagaagagaccgtaa--ttctgaggagagggagaaatctgtgtcttcacatatggagaaata |
21093034 |
T |
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| Q |
465 |
gtaaccagagccgcaagttcagcctaccaatcaaacatggcgaggcagac |
514 |
Q |
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| T |
21093033 |
gtaatcggcgccgcaagttcagtctgccagtcaaacatggcgagccagac |
21092984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 10727448 - 10727621
Alignment:
| Q |
14 |
aggcacggaggcatggaagtgttggtttcatattgtacttatgcttctaacttttgatggtttctcacatatttttacttttcgatgcgtgaggagagaa |
113 |
Q |
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| T |
10727448 |
aggcaaggaggcagggaagcgttgttttcacattgtgcttatgcttctggcttttgatggcttctcacaaaattttattttttgatgtgtaagaagtg-a |
10727546 |
T |
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| Q |
114 |
gcagatgccagaaataggttaaacatttattgagtctgggtgatgtgagcttccaatttatattgtttttatttgt |
189 |
Q |
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| T |
10727547 |
gcagatgctacaaataag-aaagtatttattgggcctaggagatgtgggcttccaatttattttgtttttgtttgt |
10727621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 526
Target Start/End: Original strand, 31437930 - 31437981
Alignment:
| Q |
475 |
ccgcaagttcagcctaccaatcaaacatggcgaggcagactgtgttgtaacc |
526 |
Q |
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| T |
31437930 |
ccgcaagtgcaacctgccaatcaaacatggcgaggcaggctgtgttgtaacc |
31437981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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