View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5544_low_3 (Length: 481)
Name: NF5544_low_3
Description: NF5544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5544_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 69 - 326
Target Start/End: Original strand, 20356353 - 20356613
Alignment:
| Q |
69 |
tttagtcttgaatggttaaacgttacatgtaatcttttccttgattacaattgactaatctttgcaattatcttcatatttgatgcacttcatttccttt |
168 |
Q |
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| T |
20356353 |
tttagtcttgaatggttaaacgttacatgtaatctttttcttgattacaattgactaatctttgcaattaccttcatatttgatgcacttcattttcttt |
20356452 |
T |
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| Q |
169 |
gcaattacgctttggcatacatgattggttgatcctagatgaccacataaagttaacttggattcgccatagtcgatgctttgaatt---gtatttagaa |
265 |
Q |
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| T |
20356453 |
gcaattacgctttggcatacatgattggttgatcctagatgaccacataaagttaacttggattcgccatagtcgatgctttgaattgtagtatttagaa |
20356552 |
T |
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| Q |
266 |
tatcgacttatgttgaccacagatgatgaagcattgtgtttaccaaagtgttttcttcccc |
326 |
Q |
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| T |
20356553 |
tatcgacttatgttgaccacagatgatgaagcattgtgtttaccaaagtgttttcttcccc |
20356613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 325 - 462
Target Start/End: Original strand, 20356635 - 20356773
Alignment:
| Q |
325 |
cctagagtgttaaccacatagtattttcgtgtacacttaaacacacaacaaggtatcaattattatcataaaaatatagactcgca-tcagttgaaatgt |
423 |
Q |
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| T |
20356635 |
cctagagtgttaaccacatagtattttcgtgtacacttaaacacacaacaaggtatcaattattatcataaaaatatatactcacattcagttgaaatgt |
20356734 |
T |
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| Q |
424 |
acttttcacatcatgtggcaaccgatatgaggtgacatt |
462 |
Q |
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| T |
20356735 |
acttttcacatcatgtggcaaccgatgtgaggtgacatt |
20356773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 27966344 - 27966295
Alignment:
| Q |
409 |
catcagttgaaatgtacttttcacatcatgtggcaaccgatatgaggtga |
458 |
Q |
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| T |
27966344 |
catcagttgaaaactacttttcacatcaggtggcaaccgatgtaaggtga |
27966295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 17157095 - 17157144
Alignment:
| Q |
111 |
gattacaattgactaatctttgcaattatcttcatatttgatgcacttca |
160 |
Q |
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| T |
17157095 |
gattacagttgacgaatcattgcatttaacttcatatttgatgcacttca |
17157144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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