View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5544_low_8 (Length: 246)
Name: NF5544_low_8
Description: NF5544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5544_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 26 - 231
Target Start/End: Complemental strand, 225483 - 225278
Alignment:
| Q |
26 |
tctcattttctaatttcaaatatcctaagtgtgttttctttcgcaacataaaccgctcacacgtcacgccacatacgagttcattattctttgtttataa |
125 |
Q |
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| T |
225483 |
tctcattttctaatttcaaatatcctaagtgtgttttctttcgcaacataaaccgctcacacgtcacgccacatacgagttcattattctttgtttataa |
225384 |
T |
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| Q |
126 |
tgtgaattggtgatctgaatgtgtgaagcattgacacttatcacttattgaattgcaggcagaaaaagaagttagggaatccaaacattttaagaaggcc |
225 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
225383 |
tgtgaattggtgatctgaatgtgtgaagtgttgacacttatcacttattgaattgcaggcagagatggaaattagggaatccaaacattttaagaaggcc |
225284 |
T |
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| Q |
226 |
atactt |
231 |
Q |
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|||||| |
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| T |
225283 |
atactt |
225278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 61 - 231
Target Start/End: Complemental strand, 210953 - 210783
Alignment:
| Q |
61 |
ttctttcgcaacataaaccgctcacacgtcacgccacatacgagttcattattctttgtttataatgtgaattggtgatctgaatgtgtgaagcattgac |
160 |
Q |
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||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||||| ||||| || || |
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| T |
210953 |
ttcttccgcaacatgaaccactcacacgtcacgccacatacaagttcattattctttgtttgtaatgcgaattggtgttctgaatgtgagaagcgttaac |
210854 |
T |
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| Q |
161 |
acttatcacttattgaattgcaggcagaaaaagaagttagggaatccaaacattttaagaaggccatactt |
231 |
Q |
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| T |
210853 |
acttatcacttattgaattgcaggcggagaaggaagttagggaatccatacattttaaaaaagctatactt |
210783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 197668 - 197622
Alignment:
| Q |
185 |
cagaaaaagaagttagggaatccaaacattttaagaaggccatactt |
231 |
Q |
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||||||| ||||| ||||||||||||||||| ||||||||||||||| |
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| T |
197668 |
cagaaaaggaagtaagggaatccaaacatttcaagaaggccatactt |
197622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 204300 - 204346
Alignment:
| Q |
185 |
cagaaaaagaagttagggaatccaaacattttaagaaggccatactt |
231 |
Q |
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| T |
204300 |
cagaaaaagaagtaagggaatccgaacattttaagatggacatactt |
204346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 34122143 - 34122236
Alignment:
| Q |
59 |
ttttctttcgcaacataaaccgctcacacgtcacgccacatacgagttcattattctttgtttataatgtgaattggtgatctgaatgtgtgaa |
152 |
Q |
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| T |
34122143 |
ttttctttcacaacatgaacctctcacacgtcatgccacatacaagttcattattctttgtttataacatgaatcagtgatctgaatgtgtgaa |
34122236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 6904190 - 6904144
Alignment:
| Q |
185 |
cagaaaaagaagttagggaatccaaacattttaagaaggccatactt |
231 |
Q |
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||||||||||||| ||||||||| |||||||||||| |||||||||| |
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| T |
6904190 |
cagaaaaagaagtaagggaatccgaacattttaagatggccatactt |
6904144 |
T |
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