View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5545-Insertion-1 (Length: 1112)

Name: NF5545-Insertion-1
Description: NF5545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5545-Insertion-1
NF5545-Insertion-1
[»] chr7 (1 HSPs)
chr7 (8-510)||(45032897-45033401)
[»] chr6 (9 HSPs)
chr6 (509-767)||(1827638-1827896)
chr6 (265-437)||(34706315-34706482)
chr6 (515-588)||(1842829-1842902)
chr6 (515-571)||(1848179-1848235)
chr6 (687-799)||(1834859-1834974)
chr6 (840-931)||(1827911-1828009)
chr6 (528-569)||(1824568-1824609)
chr6 (515-571)||(1846357-1846413)
chr6 (376-452)||(34706510-34706588)
[»] chr8 (1 HSPs)
chr8 (40-259)||(43267717-43267935)
[»] chr5 (3 HSPs)
chr5 (265-453)||(4358444-4358630)
chr5 (378-453)||(4358641-4358718)
chr5 (515-546)||(17849073-17849104)


Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 8 - 510
Target Start/End: Original strand, 45032897 - 45033401
Alignment:
Q  8 actttttcttagtgttttagttaggcatacacttttgcataaattaattgaagtgcaaccttaaacagagacactagagcggacaaagatcgatataaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45032897 actttttcttagtgttttagttaggcatacacttttgcataaattaattgaagtgcaaccttaaacagagacactagagcggacaaagatcgatataaaa 45032996  T
Q  108 cttacaaatagatatgaaaagtcgatacttcaaagctattgttttatcataaaagatggagccaagatactcttaaacaaatacctcagaaacaatttgt 207  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45032997 cttacaaatagatatgaaaagtcggtacttcaaagctattgttttatcataaaagatggagccaagatactcttaagcaaatacctcagaaacaatttgt 45033096  T
Q  208 taaacgttgggaagatttccctaaggatggcagtatagttgggtgacttagcacaaataaattgatatatacatggttcaaatgtaagctaaatatgttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45033097 taaacgttgggaagatttccctaaggatggcagtatagttgggtgacttagcacaaataaattgatatatacatggttcaaatgtaagctaaatatgttt 45033196  T
Q  308 ctgtttgtaatttcattttgattgaaaaagtaaattcgattttggtataagtaaattctcaaacatttgaagcacttccttcgtttcagattgattgtca 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45033197 ctgtttgtaatttcattttgattgaaaaagtaaattcgattttggtataagtaaattctcaagcatttgaagcacttccttcgtttcagattgattgtca 45033296  T
Q  408 tttttaggttctgtacggtttacaatct--aatttcttttgttgttaaaaattaaagtctcaactctaaaagacctgtgcgatagcacgggtcaggagtc 505  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  45033297 tttttaggttctgtacggtttacaatctaaaatttcttttgttgttaaaaattaaagtctcaactctaaaagacctgtgcgatagcttaggtcaggagtc 45033396  T
Q  506 tagta 510  Q
    |||||    
T  45033397 tagta 45033401  T

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Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 509 - 767
Target Start/End: Original strand, 1827638 - 1827896
Alignment:
Q  509 tagtatgttgaatagagagatagtaataagtcccacatcgacggcttatatagcattgagagggaatcttagcyataaattagcattggactgcatgctt 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  1827638 tagtatgttgaatagagagatagtaataagtcccacatcgacggcttatatagcattgagagggaatcttagctataaatgagcattggactgcatgctt 1827737  T
Q  609 tcaaaatacaaccggttgcaaatgcagtgcattaaatcaaggcaactggagtgaaatcaaatatttgaagtggttagcttttcataaattaaaagttgtt 708  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1827738 tcaaaatacaaccggttgcaaatgcaatgcattaaatcaatgcaactggagtgaaatcaaatatttgaagttgttagcttttcataaattaaaagttgtt 1827837  T
Q  709 ttagtgggtaataatttcaaatttttgatcttgttccagttgtcttgaggaatttgtct 767  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1827838 ttagtgggtaataatttcaaatttttgatcttgttccagttgtcttgaggaatttgtct 1827896  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 265 - 437
Target Start/End: Original strand, 34706315 - 34706482
Alignment:
Q  265 taaattgatatatacatggttcaaatgtaagctaaatatgtttctgtttgtaatttcattttgattgaaaaagtaaattcgattttggtataagtaaatt 364  Q
    |||| ||||||||| |||||||||||||||||| ||||| ||||  ||||||||||||||||||||||||||||||||| ||    ||||||||||||||    
T  34706315 taaaatgatatataaatggttcaaatgtaagctgaatatatttcaatttgtaatttcattttgattgaaaaagtaaatt-ga---gggtataagtaaatt 34706410  T
Q  365 ctcaaacatttgaagcacttccttcgtttcagattgattgtcatttttaggttctgtacggtttacaatctaa 437  Q
    ||||| |||||||| |||| ||||||| |||||||||||||| |||||||||| || || ||| |||||||||    
T  34706411 ctcaagcatttgaa-cactcccttcgtctcagattgattgtcgtttttaggttatgcacagttcacaatctaa 34706482  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 515 - 588
Target Start/End: Original strand, 1842829 - 1842902
Alignment:
Q  515 gttgaatagagagatagtaataagtcccacatcgacggcttatatagcattgagagggaatcttagcyataaat 588  Q
    |||||||||||||||||||||||||||||||||| | ||||||| ||||||| |||| || |||||| ||||||    
T  1842829 gttgaatagagagatagtaataagtcccacatcggcagcttataaagcattgggaggaaaccttagctataaat 1842902  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 515 - 571
Target Start/End: Original strand, 1848179 - 1848235
Alignment:
Q  515 gttgaatagagagatagtaataagtcccacatcgacggcttatatagcattgagagg 571  Q
    |||||||||||||||||||||||||||||||| | || |||||| ||||||||||||    
T  1848179 gttgaatagagagatagtaataagtcccacattggcgtcttataaagcattgagagg 1848235  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 687 - 799
Target Start/End: Original strand, 1834859 - 1834974
Alignment:
Q  687 ttttcataaattaaaagttgttttagtgggtaataatttcaaatttttgatcttgttccagttgtcttgaggaatttgtctc-aattatgg-gacacaat 784  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||| |||| |    |||||||||||||||| ||||| | || ||||||||  |||||||    
T  1834859 ttttcataaattaaaagttgtttttgtgggaaatcatttcaaatatttgtttccattccagttgtcttgagtaatttttttcaaattatggcaacacaat 1834958  T
Q  785 -aaattattaaatttt 799  Q
     |||||||||||||||    
T  1834959 aaaattattaaatttt 1834974  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 840 - 931
Target Start/End: Original strand, 1827911 - 1828009
Alignment:
Q  840 acattgattttctctcg-tgttgt-gctgatata--tttaatgcatatacattgcaatt-cagtgtgtactttctac-tttcactta-gggtaaatttt 931  Q
    ||||||||| ||||||| |||||| ||| |||||  ||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||    
T  1827911 acattgattctctctcggtgttgttgctaatataattttaacgcatatacattgcaatttcagtgtgtactttctacttttcacttaggggtaaatttt 1828009  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 528 - 569
Target Start/End: Original strand, 1824568 - 1824609
Alignment:
Q  528 atagtaataagtcccacatcgacggcttatatagcattgaga 569  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  1824568 atagtaataagtcccacatcggcagcttatatagcattgaga 1824609  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 515 - 571
Target Start/End: Original strand, 1846357 - 1846413
Alignment:
Q  515 gttgaatagagagatagtaataagtcccacatcgacggcttatatagcattgagagg 571  Q
    ||||| |||||||||||||||||||||||||  | | ||||||| ||||||||||||    
T  1846357 gttgagtagagagatagtaataagtcccacactggcagcttataaagcattgagagg 1846413  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 452
Target Start/End: Original strand, 34706510 - 34706588
Alignment:
Q  376 gaagcacttccttcgtttcagattgattgtcatttttaggttctgtacggtttacaatct--aatttcttttgttgtta 452  Q
    |||||||| |||| || |||||||||||||| || ||||||| || ||| || |||||||  |||||||||||||||||    
T  34706510 gaagcactccctttgtctcagattgattgtcgttcttaggttatgcacgattcacaatctaaaatttcttttgttgtta 34706588  T

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Target: chr8 (Bit Score: 122; Significance: 5e-62; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 40 - 259
Target Start/End: Complemental strand, 43267935 - 43267717
Alignment:
Q  40 ttttgcataaattaattgaagtgcaaccttaaacagagacactagagcggacaaagatcgatataaaacttacaaatagatatgaaaagtcgatacttca 139  Q
    ||||||| ||||||||||||||||||||| |||||||||   || ||||  |||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  43267935 ttttgcagaaattaattgaagtgcaacctaaaacagagat--taaagcgtgcaaagatctatataaaacttacaaatagatatgaaaagtcaatacttca 43267838  T
Q  140 aagctattgttttatcataaaagatggagccaagatactcttaaacaaatacctcagaaacaatttgttaaacgttggg-aagatttccctaaggatggc 238  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||  |||||| |||||| | ||||||| || |||||| |||| |||||| | ||||||    
T  43267837 aagctattgttttatcagaaaagatggagccaagatacttttaagaaaatacatcagaatcgatttgttgaatgttgggaaagacttcccttaagatggc 43267738  T
Q  239 agtatagttgggtgacttagc 259  Q
    |||||||||||||||||||||    
T  43267737 agtatagttgggtgacttagc 43267717  T

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Target: chr5 (Bit Score: 78; Significance: 9e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 265 - 453
Target Start/End: Original strand, 4358444 - 4358630
Alignment:
Q  265 taaattgatatatacatggttcaaatgtaagctaaatatgtttctgtttgtaatttcattttgattgaaaaagtaaattcgattttggtataagtaaatt 364  Q
    |||| ||||||||  |||||||||||||||||| |||||  |||| |||| |||||||||||||||||||||||||||| ||    ||||||||||||||    
T  4358444 taaaatgatatattaatggttcaaatgtaagctgaatatacttctatttgaaatttcattttgattgaaaaagtaaatt-gag---ggtataagtaaatt 4358539  T
Q  365 ctcaaacatttgaagcacttccttcgtttcagattgattgtcatttttaggttctgtacggtttacaatct--aatttcttttgttgttaa 453  Q
    ||||| ||||||||||||| ||||||| |||||| ||||||| || ||||||| || |||||| | |||||  || |||||||||||||||    
T  4358540 ctcaagcatttgaagcactcccttcgtctcagatggattgtcgttcttaggttatgcacggttcataatctaaaacttcttttgttgttaa 4358630  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 4358641 - 4358718
Alignment:
Q  378 agcacttccttcgtttcagattgattgtcatttttaggttctgtacggtttacaatct--aatttcttttgttgttaa 453  Q
    |||||| ||||||| |||||||||||||| || ||||||| || ||| || |||||||  ||||||||||||||||||    
T  4358641 agcactcccttcgtctcagattgattgtcgttcttaggttatgcacgattcacaatctaaaatttcttttgttgttaa 4358718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 546
Target Start/End: Original strand, 17849073 - 17849104
Alignment:
Q  515 gttgaatagagagatagtaataagtcccacat 546  Q
    ||||||||||||||||||||||||||||||||    
T  17849073 gttgaatagagagatagtaataagtcccacat 17849104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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