View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5545_high_1 (Length: 785)
Name: NF5545_high_1
Description: NF5545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5545_high_1 |
 | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
| [»] scaffold0555 (1 HSPs) |
| | |
|
| [»] scaffold0189 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 714; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 7 - 782
Target Start/End: Complemental strand, 14747989 - 14747215
Alignment:
| Q |
7 |
gagcacttaatgaatttggtagagtggaagtttcatgaataactgcattttcagaattataatggaaaaccatatacnnnnnnnnagaagaaaagcataa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14747989 |
gagcacttaatgaatttggtagagtggaagtttcatgaataactgcattttcagaattataatggaaaaccatatacttttttttagaagaaaagcataa |
14747890 |
T |
|
| Q |
107 |
acttcttcagttgagtggttatataacatgttaaacaacttaaaagttgacataagatagtaggaagatactttcttacattcaactaatcagctatatc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14747889 |
acttcttcagttgagtggttatataacatgttaaacaacttaaaagttgacataagatagtaggaagatactttcttacattcaactaatcagctatatc |
14747790 |
T |
|
| Q |
207 |
ttcttattgattactaccctacttcatnnnnnnntaaatcacgagttatcacagttcattgtgctcacctattaagtatcatttattattgaataaaatc |
306 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14747789 |
ttcttattgattactaccctacttcataaaaaa-taaatcacaagttatcacagttcattgtgctcacctattaagtatcatttattattgaataaaatc |
14747691 |
T |
|
| Q |
307 |
ttctttgctattaaataaagaatctaaataaaaacatcaaattgatcaagatattaggctcaatggttgatgaccattaatgtcaaaatcgttcaggata |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14747690 |
ttctttgctattaaataaagaatctaaataaaaacatcaaattgatcaagatattaggctcaatggttgatgaccattaatgtcaaaatcgttcaggata |
14747591 |
T |
|
| Q |
407 |
ccttgttttggtatgataggtggataggaggtactccgttgtttaggcggtttggacgtttatttagcttagcacttaataagctgagtacggtgtcaga |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14747590 |
ccttgttttggtatgataggtggataggaggtactccgttgtttaggcggtttggacgtttatttagcttagcacttaataagctgagtacggtgtcaga |
14747491 |
T |
|
| Q |
507 |
tgtgttcatgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgtta |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14747490 |
tgtgttcatgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgtta |
14747391 |
T |
|
| Q |
607 |
cttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaacttaa |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14747390 |
cttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaacttaa |
14747291 |
T |
|
| Q |
707 |
cgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttgatgatgtccat |
782 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
14747290 |
cgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttgaaggtgtccat |
14747215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 487 - 782
Target Start/End: Original strand, 38076166 - 38076461
Alignment:
| Q |
487 |
aagctgagtacggtgtcagatgtgttcatgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgt |
586 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38076166 |
aagctgagtacggtgtcagatatgttcatgcgtggctgggaggtaggaggtgatgcgtggagctggaggagaccgttgtgggtgtgggaggaggagatgt |
38076265 |
T |
|
| Q |
587 |
taggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaag |
686 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
38076266 |
taggcgagtgttgcctgttacttaatacttttattatgcatactgatgtttcttacagttggcagtggctcccggacattgtgggatgctataccgtaag |
38076365 |
T |
|
| Q |
687 |
caatgcgtacaagaacttaacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttgatgatgtccat |
782 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||| |
|
|
| T |
38076366 |
caatgcgtataagaacttaacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgtccctctgaaggtgtccat |
38076461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 404 - 782
Target Start/End: Original strand, 29721611 - 29721989
Alignment:
| Q |
404 |
ataccttgttttggtatgataggtggataggaggtactccgttgtttaggcggtttggacgtttatttagcttagcacttaataagctgagtacggtgtc |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29721611 |
ataccttgttttggtatgataggtggataggaggtattccgttgtttaggcggtttgaacgtttatttagcttagcacttaataagctgagtacggtgtc |
29721710 |
T |
|
| Q |
504 |
agatgtgttcatgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttg |
603 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29721711 |
agatatgttcatgcgtggctgggaggtaggaggtgatgcgtggagctggaggagaccattgtgggtgtgggaggaggagatgttaggcgagtgttgcatg |
29721810 |
T |
|
| Q |
604 |
ttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaact |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29721811 |
ttacttaatacttttattgtgcatactgatgtttctgacaggtggcagtggctcccgaacattgggggaggctatacagtaagcaatgcgtataagaact |
29721910 |
T |
|
| Q |
704 |
taacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttgatgatgtccat |
782 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
29721911 |
taacgtttcaggctgcccctttgattaacgtgacagatgatctcgtttggcacaagtatgttcctttgaaggtgtccat |
29721989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 541 - 667
Target Start/End: Complemental strand, 12340870 - 12340744
Alignment:
| Q |
541 |
gcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctg |
640 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||||| | ||||| |||||| || |||||||||| |||| || |||| ||||||| ||||| |
|
|
| T |
12340870 |
gcgtggagatggaggagaaggttgtgggagtgggaggaggagttattaggggagtgtcgccatttacttaataattttgttttgcagactgatgcttctg |
12340771 |
T |
|
| Q |
641 |
acagctggcagtggctcccggacattg |
667 |
Q |
| |
|
|||| |||||||||||||| ||||||| |
|
|
| T |
12340770 |
acaggtggcagtggctccctgacattg |
12340744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 571 - 656
Target Start/End: Complemental strand, 36024793 - 36024708
Alignment:
| Q |
571 |
tgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggct |
656 |
Q |
| |
|
||||||||| ||||| ||||| ||||| || |||||| ||| |||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
36024793 |
tgggaggagaagatgataggcaagtgtcgccgtttacttcataattttgttgtgcagactgatgtttctgacaggtggcagtggct |
36024708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 563 - 597
Target Start/End: Complemental strand, 35029502 - 35029468
Alignment:
| Q |
563 |
tgtgggtgtgggaggaggagatgttaggcgagtgt |
597 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
35029502 |
tgtgggtgtgggaggaggagatgttaggggagtgt |
35029468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 582
Target Start/End: Complemental strand, 3939509 - 3939468
Alignment:
| Q |
541 |
gcgtggagctggaggagacctctgtgggtgtgggaggaggag |
582 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||||||||||||| |
|
|
| T |
3939509 |
gcgtggaactggaggagacctttgtgagtgtgggaggaggag |
3939468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 404 - 762
Target Start/End: Complemental strand, 3705168 - 3704810
Alignment:
| Q |
404 |
ataccttgttttggtatgataggtggataggaggtactccgttgtttaggcggtttggacgtttatttagcttagcacttaataagctgagtacggtgtc |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3705168 |
ataccttgttttggtatgataggtggataggaggtattccgttgtttaggcggtttgaacgtttatttagcttagcacttaataagctaagtacggtgtc |
3705069 |
T |
|
| Q |
504 |
agatgtgttcatgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttg |
603 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
3705068 |
agatatgttcatgcgtggctgggaggtaggaggtgatgcgtggagctggaggagaccgttgtgggtgtgggaggaggagatgttaggcaagtgttgcctg |
3704969 |
T |
|
| Q |
604 |
ttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaact |
703 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
3704968 |
ttacttaatacttttattatgcatactgatgtttctaacagatggcagtggctcccggacattgggggaagctaaacagtaagcaatgcgtataagaact |
3704869 |
T |
|
| Q |
704 |
taacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtat |
762 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3704868 |
taaagtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtat |
3704810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 441 - 683
Target Start/End: Complemental strand, 39073545 - 39073303
Alignment:
| Q |
441 |
tccgttgtttaggcggtttggacgtttatttagcttagcacttaataagctgagtacggtgtcagatgtgttcatgcggggctgggaggtaggaggtggt |
540 |
Q |
| |
|
|||||||| |||| ||||| ||||||||| ||||||| | |||||||||||||| ||||| ||| |||||| | || |||||||||||||| | | |
|
|
| T |
39073545 |
tccgttgtgtaggaggtttaaccgtttatttggcttagctttgaataagctgagtacagtgtctgatatgttcactcttggttgggaggtaggaggagat |
39073446 |
T |
|
| Q |
541 |
gcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctg |
640 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||| || | |||||||| | |||| |||||||||||||||||| || |
|
|
| T |
39073445 |
gcgtggagttggaggagaccgttgtgggcgtgggaggaggagatgttaagcgagtgtcgccttttacttaacaattttgttgtgcatactgatgtttttg |
39073346 |
T |
|
| Q |
641 |
acagctggcagtggctcccggacattgggggaggctatacagt |
683 |
Q |
| |
|
|||| ||||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
39073345 |
acaggtggcaatggctcccggatattgtgggaggctatacagt |
39073303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 563 - 659
Target Start/End: Complemental strand, 13352884 - 13352788
Alignment:
| Q |
563 |
tgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctccc |
659 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| || |||||||| | |||| ||||||| ||||||||||||| ||| |||||||| ||||| |
|
|
| T |
13352884 |
tgtgggcgtgggaggaggagttgttaggcgagtgtcgccatttacttaacaattttgttgtgcaaactgatgtttctggcaggtggcagtgactccc |
13352788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 404 - 782
Target Start/End: Original strand, 38355394 - 38355769
Alignment:
| Q |
404 |
ataccttgttttggtatgataggtggataggaggtactccgttgtttaggcggtttggacgtttatttagcttagcacttaataagctgagtacggtgtc |
503 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38355394 |
ataccttattttggtatgataggtggataggaggtattccgttgtttaggcggtttgaacgtttatttcgcttagcacttaataagctgagtacggtgtc |
38355493 |
T |
|
| Q |
504 |
agatgtgttcatgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttg |
603 |
Q |
| |
|
|| | ||||||| || || |||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38355494 |
agttatgttcatacgtggttgggaggtcggaggtgatgcgtggagctggaggagaccgttgtgggtgtgggag---gagatgttaggcgagtgttgcttg |
38355590 |
T |
|
| Q |
604 |
ttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaact |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| || |
|
|
| T |
38355591 |
ttacttaatacttttattgtgcatactgatgtttctgacaggtggcagtggctcccggacattgggggaggctatacagtaagcaatgcatataagatct |
38355690 |
T |
|
| Q |
704 |
taacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttgatgatgtccat |
782 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||| |
|
|
| T |
38355691 |
taacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgtccctctgaaggtgtccat |
38355769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 404 - 772
Target Start/End: Complemental strand, 55367049 - 55366681
Alignment:
| Q |
404 |
ataccttgttttggtatgataggtggataggaggtactccgttgtttaggcggtttggacgtttatttagcttagcacttaataagctgagtacggtgtc |
503 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| | ||||||| ||||| |||||| ||||||||||||||||| | |||||| ||| ||||||||| |
|
|
| T |
55367049 |
ataccttgttttggtatgatagatggattggagatgttccgttgcttaggaggtttgaccgtttatttagcttagctcaaaataagttgattacggtgtc |
55366950 |
T |
|
| Q |
504 |
agatgtgttcatgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttg |
603 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| || || |
|
|
| T |
55366949 |
agatatgttcgcgcggggttgggaggtaggaggcgaggcgtggagttggaggagaccgttgtgggtgtgggaggaggagttgttaggcgagtgtcgcctg |
55366850 |
T |
|
| Q |
604 |
ttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatacagtaagcaatgcgtacaagaact |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||| ||||||||||||||||| | | || |
|
|
| T |
55366849 |
ctacttaatacttttattgtgcatactgatgtttctgacaggtggcagtggcttccggacattagggaaggctacacagtaagcaatgcgtatgacatct |
55366750 |
T |
|
| Q |
704 |
taacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttga |
772 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
55366749 |
taacgtttcaggctgcacctttaatctccgtgacagatgagctcgtttggcacaagcatgttcctttga |
55366681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 582 - 772
Target Start/End: Original strand, 52194486 - 52194676
Alignment:
| Q |
582 |
gatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctataca |
681 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52194486 |
gatgttaggcgagtgttgcctgttacttaatacttttattgtgcatactgatgtttctgacaggtggcagtggctcccggacattgggggaggctacaca |
52194585 |
T |
|
| Q |
682 |
gtaagcaatgcgtacaagaacttaacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttga |
772 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
52194586 |
ataagcaatgcgtatcagaacttaacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagcatgtccctttga |
52194676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 509 - 659
Target Start/End: Complemental strand, 18381392 - 18381242
Alignment:
| Q |
509 |
tgttcatgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttact |
608 |
Q |
| |
|
|||||||||| || ||||||||||| || | ||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||| || | ||||| |
|
|
| T |
18381392 |
tgttcatgcgcggttgggaggtagggggagatgcgtggagatggaggagacggttgtggtcgtgggaggaggagttgttaggcgagtgtcgccttttact |
18381293 |
T |
|
| Q |
609 |
taatacttttattgtgcatactgatgtttctgacagctggcagtggctccc |
659 |
Q |
| |
|
||| | |||| ||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
18381292 |
taacaattttgttgtgcaaactgatgtttctgacaagtggcagtggctccc |
18381242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 542 - 667
Target Start/End: Complemental strand, 46189794 - 46189670
Alignment:
| Q |
542 |
cgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctga |
641 |
Q |
| |
|
||||||| |||||||||| |||||| ||| ||||||||| ||||||| |||||| || |||||||| | |||| ||||||| |||||||||||||| |
|
|
| T |
46189794 |
cgtggagttggaggagacaa-tgtgggagtgagaggaggagttgttaggtgagtgtcgccaattacttaacaattttgttgtgcagactgatgtttctga |
46189696 |
T |
|
| Q |
642 |
cagctggcagtggctcccggacattg |
667 |
Q |
| |
|
||| ||| |||||||||| ||||||| |
|
|
| T |
46189695 |
caggtggtagtggctccctgacattg |
46189670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 2427100 - 2427232
Alignment:
| Q |
523 |
tgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattg |
622 |
Q |
| |
|
||||||| ||| |||| ||||||| | || |||||| | |||||| ||||||||||||||| ||||||| | | || |||||| ||| |||| ||| |
|
|
| T |
2427100 |
tgggaggaagggggtgctgcgtggggttgtcggagacgtttgtgggattgggaggaggagatgataggcgaatttcgccgtttacttgataattttgttg |
2427199 |
T |
|
| Q |
623 |
tgcatactgatgtttctgacagctggcagtggc |
655 |
Q |
| |
|
| || ||||||||||||||||| |||||||||| |
|
|
| T |
2427200 |
tacagactgatgtttctgacaggtggcagtggc |
2427232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 532 - 582
Target Start/End: Original strand, 31921179 - 31921229
Alignment:
| Q |
532 |
ggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggag |
582 |
Q |
| |
|
||||| || ||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
31921179 |
ggaggaggggcgtggaactggaggagacctttgtgggtgtgggaggaggag |
31921229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 582
Target Start/End: Complemental strand, 31675232 - 31675191
Alignment:
| Q |
541 |
gcgtggagctggaggagacctctgtgggtgtgggaggaggag |
582 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
31675232 |
gcgtggaactggaggagacctttgtgggtgtgggaggaggag |
31675191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 481 - 782
Target Start/End: Complemental strand, 32363430 - 32363129
Alignment:
| Q |
481 |
cttaataagctgagtacggtgtcagatgtgttcatgcggggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggagg |
580 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32363430 |
cttaataagctgagtacggtgtcagatatgttcatgcgtgactgggaggtaggaggtgatgcatggagctggaggagaccgttgtgggtgtgggaggagg |
32363331 |
T |
|
| Q |
581 |
agatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatac |
680 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
32363330 |
agatgttaggcgagtgttgcctgttacttaatacttttattatgcatactgatgtttctgacaggtggcagtggctcccggacattgagggaggctatac |
32363231 |
T |
|
| Q |
681 |
agtaagcaatgcgtacaagaacttaacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgttcctttgatgatgtcc |
780 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||| |
|
|
| T |
32363230 |
cgtaagcaatgcgtataagaacttaacgtttcaggctgcccctttgattaccgtgacagatgatctcgtttggcacaagtatgtccctctgaaggtgtcc |
32363131 |
T |
|
| Q |
781 |
at |
782 |
Q |
| |
|
|| |
|
|
| T |
32363130 |
at |
32363129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 659
Target Start/End: Original strand, 13563754 - 13563890
Alignment:
| Q |
523 |
tgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattg |
622 |
Q |
| |
|
||||||||||| || | ||| ||||| |||||||||| ||||||||| |||||||||| |||||||||||||| | | |||||||| | |||| | | |
|
|
| T |
13563754 |
tgggaggtagggggagatgcctggagatggaggagacgattgtgggtgtaggaggaggagttgttaggcgagtgtcgtattttacttaacaattttgtag |
13563853 |
T |
|
| Q |
623 |
tgcatactgatgtttctgacagctggcagtggctccc |
659 |
Q |
| |
|
| || || |||||||||||||| |||||||||||||| |
|
|
| T |
13563854 |
ttcaaacagatgtttctgacaggtggcagtggctccc |
13563890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 520 - 658
Target Start/End: Original strand, 8384451 - 8384589
Alignment:
| Q |
520 |
ggctgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatactttta |
619 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||||||| |||||| ||||||||||||| || |||| |||||| || | |||||||| | |||| |
|
|
| T |
8384451 |
ggctgggaggtagggggtgaagcgtggagatggaggagaaggttgtgggagtgggaggaggagttgctaggggagtgtcgcctattacttaacaattttg |
8384550 |
T |
|
| Q |
620 |
ttgtgcatactgatgtttctgacagctggcagtggctcc |
658 |
Q |
| |
|
|| |||| |||| |||| ||||||| ||||||||||||| |
|
|
| T |
8384551 |
ttttgcagactgttgttactgacaggtggcagtggctcc |
8384589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 658
Target Start/End: Original strand, 17251909 - 17251992
Alignment:
| Q |
575 |
aggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcc |
658 |
Q |
| |
|
|||||||| ||||||| |||||| || | | |||||| | |||| ||||||| |||||||||||| |||| ||||| ||||||| |
|
|
| T |
17251909 |
aggaggagttgttaggtgagtgtcgcctttcacttaacaattttgttgtgcaaactgatgtttctcacaggtggcaatggctcc |
17251992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 30298051 - 30298155
Alignment:
| Q |
107 |
acttcttcagttgagtggttatataacatgttaaacaacttaaaagttgacataagatagtaggaagatactttcttacattcaactaatcagctatatc |
206 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30298051 |
acttcttcagctgagtggttatgtaacatattaaacaacttaaaagctgaaataagataataggaagatactttcttacattcaactgatcagctatatt |
30298150 |
T |
|
| Q |
207 |
ttctt |
211 |
Q |
| |
|
||||| |
|
|
| T |
30298151 |
ttctt |
30298155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 30326918 - 30327022
Alignment:
| Q |
107 |
acttcttcagttgagtggttatataacatgttaaacaacttaaaagttgacataagatagtaggaagatactttcttacattcaactaatcagctatatc |
206 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30326918 |
acttcttcagctgagtggttatgtaacatattaaacaacttaaaagctgaaataagataataggaagatactttcttacattcaactgatcagctatatt |
30327017 |
T |
|
| Q |
207 |
ttctt |
211 |
Q |
| |
|
||||| |
|
|
| T |
30327018 |
ttctt |
30327022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 562 - 656
Target Start/End: Complemental strand, 18734834 - 18734740
Alignment:
| Q |
562 |
ctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggct |
656 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||||| || |||||| ||| |||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18734834 |
ctgtgggattgggaggaggagatgatagacgagtgtcgccgtttacttgataattttgttgtgcatactgatgtttctgacaggtggcagtggct |
18734740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 542 - 667
Target Start/End: Original strand, 56337337 - 56337462
Alignment:
| Q |
542 |
cgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctga |
641 |
Q |
| |
|
||||||| |||||||||| |||||| || |||||||||| |||||||||||||| | |||||||| | |||| ||||||| ||||||||||| || |
|
|
| T |
56337337 |
cgtggagttggaggagacggttgtgggagtaggaggaggagttgttaggcgagtgtctccgattacttaacaattttgttgtgcagactgatgtttcaga |
56337436 |
T |
|
| Q |
642 |
cagctggcagtggctcccggacattg |
667 |
Q |
| |
|
||| |||| ||||||||| ||||||| |
|
|
| T |
56337437 |
caggtggcggtggctccctgacattg |
56337462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 523 - 666
Target Start/End: Complemental strand, 36182857 - 36182714
Alignment:
| Q |
523 |
tgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattg |
622 |
Q |
| |
|
||||||||||| || | |||||||| ||||||||| | |||| ||||||||||||| || |||| | |||| |||| |||||||| | |||| || |
|
|
| T |
36182857 |
tgggaggtagggggagaagcgtggagatggaggagaaggttatgggagtgggaggaggagttgctaggggtgtgtcgctttttacttaacaattttgttt |
36182758 |
T |
|
| Q |
623 |
tgcatactgatgtttctgacagctggcagtggctcccggacatt |
666 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||| |||||| |||||| |
|
|
| T |
36182757 |
tgcagactgatgttactgacaggtggcagtagctccctgacatt |
36182714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 571 - 656
Target Start/End: Complemental strand, 41382245 - 41382160
Alignment:
| Q |
571 |
tgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggct |
656 |
Q |
| |
|
||||||||| ||||| ||||||||||| || |||||| || |||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
41382245 |
tgggaggagcagatgataggcgagtgtcgccgtttacttgatgattttgttgtgcagactgatgtttctgacaggtggcagtggct |
41382160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 563 - 653
Target Start/End: Complemental strand, 9690703 - 9690613
Alignment:
| Q |
563 |
tgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtg |
653 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| | | |||||| ||||| || |||||| ||| ||||||||||||| |||||||| |
|
|
| T |
9690703 |
tgtgggtgtgggaggaggagatggtagaagagtgtaggcttttacttgatactgtttgtgtgcagactaatgtttctgacaggtggcagtg |
9690613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 554 - 656
Target Start/End: Complemental strand, 38070122 - 38070020
Alignment:
| Q |
554 |
ggagacctctgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtg |
653 |
Q |
| |
|
|||||| | |||||| ||||||||||||||| ||||||||||| || |||||| ||| |||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
38070122 |
ggagacgtttgtgggattgggaggaggagatgataggcgagtgtcgccgtttacttgataattttgttgtgcagactgatgtttctgacaggtggcagtg |
38070023 |
T |
|
| Q |
654 |
gct |
656 |
Q |
| |
|
||| |
|
|
| T |
38070022 |
gct |
38070020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 587 - 680
Target Start/End: Complemental strand, 22566316 - 22566223
Alignment:
| Q |
587 |
taggcgagtgttgcttgttacttaatacttttattgtgcatactgatgtttctgacagctggcagtggctcccggacattgggggaggctatac |
680 |
Q |
| |
|
||||||||||| | ||||||| ||| |||| || |||| ||||||||||||||||| ||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
22566316 |
taggcgagtgtcgacagttacttgataattttgttttgcagactgatgtttctgacaggtggcagtggctccttgacattgaggggggctatac |
22566223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 532 - 582
Target Start/End: Original strand, 3544930 - 3544980
Alignment:
| Q |
532 |
ggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggag |
582 |
Q |
| |
|
||||| || ||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
3544930 |
ggaggaggggcgtggaactggaggagacctttgtgggtgtgggaggaggag |
3544980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 582
Target Start/End: Original strand, 40563378 - 40563437
Alignment:
| Q |
523 |
tgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggag |
582 |
Q |
| |
|
||||||| ||| |||| ||||||||| |||||||||| | |||||| ||||||||||||| |
|
|
| T |
40563378 |
tgggaggaaggtggtgatgcgtggagttggaggagacgtttgtgggcgtgggaggaggag |
40563437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 589
Target Start/End: Original strand, 1248414 - 1248471
Alignment:
| Q |
532 |
ggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggagatgttag |
589 |
Q |
| |
|
||||| || ||||||| |||||||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
1248414 |
ggaggaggggcgtggaattggaggagacctttgtgggtatgggaggaggagctgttag |
1248471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 523 - 582
Target Start/End: Original strand, 34429 - 34488
Alignment:
| Q |
523 |
tgggaggtaggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggag |
582 |
Q |
| |
|
||||||| ||||| || ||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
34429 |
tgggagggtggaggaggggcgtggaactggaggagacctttgtgggtgtgggaggaggag |
34488 |
T |
|
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Target: scaffold0555 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 532 - 582
Target Start/End: Complemental strand, 7979 - 7929
Alignment:
| Q |
532 |
ggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggag |
582 |
Q |
| |
|
||||| || ||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
7979 |
ggaggaggggcgtggaactggaggagacctttgtgggtgtgggaggaggag |
7929 |
T |
|
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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 582
Target Start/End: Complemental strand, 476524 - 476474
Alignment:
| Q |
532 |
ggaggtggtgcgtggagctggaggagacctctgtgggtgtgggaggaggag |
582 |
Q |
| |
|
||||| || ||||||| || |||||||||| |||||||||||||||||||| |
|
|
| T |
476524 |
ggaggaggggcgtggaactagaggagacctttgtgggtgtgggaggaggag |
476474 |
T |
|
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 563 - 609
Target Start/End: Complemental strand, 23923129 - 23923083
Alignment:
| Q |
563 |
tgtgggtgtgggaggaggagatgttaggcgagtgttgcttgttactt |
609 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | ||||||||| |
|
|
| T |
23923129 |
tgtgggtgtgggaggaggagatgttagcggagtgtaggttgttactt |
23923083 |
T |
|
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Target: scaffold0189 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 541 - 582
Target Start/End: Complemental strand, 6390 - 6349
Alignment:
| Q |
541 |
gcgtggagctggaggagacctctgtgggtgtgggaggaggag |
582 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
6390 |
gcgtggagttggaggagacgtttgtgggtgtgggaggaggag |
6349 |
T |
|
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