View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5545_low_2 (Length: 428)
Name: NF5545_low_2
Description: NF5545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5545_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 371
Target Start/End: Original strand, 8451377 - 8451736
Alignment:
| Q |
12 |
ttttgatggggtaggggatgtaatggaacaaatagacataggaaattggaatgatgaattagaaggcatggaagaacaagctgaagctagagaggaaacc |
111 |
Q |
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| T |
8451377 |
ttttgatggggtaggggatgtaatggaacaaatagatataggaaattggaatgatgaattagaaggcatggaagaacaagctgaagctagagaggaaacc |
8451476 |
T |
|
| Q |
112 |
ataccaaagttaagagccaaaaggaatgctattcataagtaagcattatcaacaatataagtagaatttctcaaccttcaccatagggacaaggtaatct |
211 |
Q |
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| T |
8451477 |
ataccaaagttaagagccaaaaggaatgctattcataagtaagcattatcaacaatataagtagaatttctcaaccttcaccatagggacaaggtaatct |
8451576 |
T |
|
| Q |
212 |
agtgctacctcaggtttaacattatgcatgagcaaatgcatatgaatcaaacaagtgttgcatatcatacagcaagaaatttcaaaacagtatcatagta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8451577 |
agtgctacctcaggtttaacattatgcatgagcaaatgcatatgaatcaaacaagtgttgcatatcatacagcaagaaatttcaaaacagtatcatagta |
8451676 |
T |
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| Q |
312 |
ctctccaacatgtgcataagaaagaagcaatgattacattccatgaaaccttgctccttc |
371 |
Q |
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| T |
8451677 |
ctctccaacatgtgcataagaaagaagcaatgattacattccatgaaaccttgctccttc |
8451736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 149 - 371
Target Start/End: Complemental strand, 8480025 - 8479789
Alignment:
| Q |
149 |
agtaagcattatcaacaatataagtagaatttctcaaccttcaccatagggacaaggtaatctagtgctacctcaggtttaacattatgcatg------- |
241 |
Q |
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| T |
8480025 |
agtaaacattatcaacaacataagtagaatttctcaaccttcaccatagggacaagataatccagtgctgcctcagatttaacattatgcatggcaaaat |
8479926 |
T |
|
| Q |
242 |
-------agcaaatgcatatgaatcaaacaagtgttgcatatcatacagcaagaaatttcaaaacagtatcatagtactctccaacatgtgcataagaaa |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||| | |||||||| |
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| T |
8479925 |
aatggtgagcaaatgcatatgaatcaaacaagtgttgcatatcatacaccgagaaatttcaaaacagtatcatagtactccccaacatggggataagaaa |
8479826 |
T |
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| Q |
335 |
gaagcaatgattacattccatgaaaccttgctccttc |
371 |
Q |
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| T |
8479825 |
gaagcaatgattacattccatgaaaccttgctccttc |
8479789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 261 - 376
Target Start/End: Original strand, 8411976 - 8412088
Alignment:
| Q |
261 |
aacaagtgttgcatatcatacagcaagaaatttcaaaacagtatcatagtactctccaacatgtgcataagaaagaagcaatgattacattccatgaaac |
360 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8411976 |
aacaagtgttgcatatcatacaacaagaaatttcaaaacagtatcata---ctctcaatcatgtgcataagaaagaagcaatgaatacattccatgaaac |
8412072 |
T |
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| Q |
361 |
cttgctccttccttca |
376 |
Q |
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|||| |||||| |||| |
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| T |
8412073 |
cttgatccttctttca |
8412088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 8427753 - 8427670
Alignment:
| Q |
12 |
ttttgatggggtaggggatgtaatggaacaaatagacataggaaattggaatgatgaattag-aaggcatggaagaacaagctg |
94 |
Q |
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| T |
8427753 |
ttttgatggggtaggggatgtaatggaacaaatagatataggaaattggaatgatgaattagaaaggcatggaagaacaagctg |
8427670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 8350721 - 8350762
Alignment:
| Q |
240 |
tgagcaaatgcatatgaatcaaacaagtgttgcatatcatac |
281 |
Q |
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| T |
8350721 |
tgagcaaatgcatatgaatcaaacaagttttgcatatcatac |
8350762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 8411941 - 8411975
Alignment:
| Q |
176 |
aatttctcaaccttcaccatagggacaaggtaatc |
210 |
Q |
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| T |
8411941 |
aatttctcaaccttcaccatagagacaaggtaatc |
8411975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 8415304 - 8415361
Alignment:
| Q |
310 |
tactctccaacatgtgcataagaaagaagcaatgattacattccatgaaaccttgctc |
367 |
Q |
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|||||| |||| || ||||||||||||| |||| |||||||||| || |||||||||| |
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| T |
8415304 |
tactcttcaacctgcgcataagaaagaatcaattattacattccttgcaaccttgctc |
8415361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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