View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5545_low_3 (Length: 272)
Name: NF5545_low_3
Description: NF5545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5545_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 5428025 - 5428280
Alignment:
| Q |
17 |
ttttgacaatgcatttacctgcagagaccgaaatatgactggctcggcaagtcgatagagtagtttctcaaccccatcaacggtcctctgattaataaac |
116 |
Q |
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| T |
5428025 |
ttttgacaatgcatttacctgcagagaccgaaatatgactggctcggcaagtcgatagagtagtttctcaaccccatcaacggtcctctgattaataaac |
5428124 |
T |
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| Q |
117 |
cctcccaaaacccttctaatatacaaagcaaaagctccagaacttgcatgaatagaaccctcaatcaaatcctgcaagaacccatcctcaattccactcc |
216 |
Q |
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| T |
5428125 |
cctcccaaaacccttctaatatacaaagcaaaaactccagaacttgcatgaatagaaccctcaatcaaatcctgcaagaacccatcctcaattccactcc |
5428224 |
T |
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| Q |
217 |
ttgaatcttctggcgcagctttccatgctcgaaacaatatatccccataagcctcc |
272 |
Q |
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| T |
5428225 |
ttgaatcttctggcgcagctttccatgctcgaaacaatatatccccataagcctcc |
5428280 |
T |
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