View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5545_low_4 (Length: 238)
Name: NF5545_low_4
Description: NF5545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5545_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 16067837 - 16067910
Alignment:
| Q |
26 |
caaaagaaaaaattgggaaatgagagcaaatgaatcatatctacaattgtgtttgaatcgttctcatcatcatg |
99 |
Q |
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| T |
16067837 |
caaaataaaaaattgggaaatgagagcaaatgattcatatctacaattgtgtttgaatcgttttcatcatcatg |
16067910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 16071114 - 16071187
Alignment:
| Q |
26 |
caaaagaaaaaattgggaaatgagagcaaatgaatcatatctacaattgtgtttgaatcgttctcatcatcatg |
99 |
Q |
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| T |
16071114 |
caaaagaaaaaattgggaaatgagagaaaattattcatatctacaattgtgtttgaattgttctcatcatcatg |
16071187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 16067976 - 16068032
Alignment:
| Q |
165 |
ctctaatagtctaaaatttttcttgacatgaaaccgcagaagatgaaaagaatatac |
221 |
Q |
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| T |
16067976 |
ctctaatagtctaaaatttttcttgacatgaaaccgcagaagatgaaaagaatatac |
16068032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 16071255 - 16071306
Alignment:
| Q |
165 |
ctctaatagtctaaaatttttcttgacatgaaaccgcagaagatgaaaagaa |
216 |
Q |
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| T |
16071255 |
ctctaatagtctaaattttttcttgacataaaataacagaagatgaaaagaa |
16071306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 16078244 - 16078280
Alignment:
| Q |
181 |
tttttcttgacatgaaaccgcagaagatgaaaagaat |
217 |
Q |
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| T |
16078244 |
tttttcttgacatgaaaccacataagatgaaaagaat |
16078280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 3883721 - 3883780
Alignment:
| Q |
36 |
aattgggaaatgagagcaaatgaatcatatctacaattgtgtttgaatcgttctcatcat |
95 |
Q |
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| T |
3883721 |
aattgggaaatgagatcaaatgattcatatatacaattatgtttgaatcgttctcatcat |
3883780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 3897585 - 3897648
Alignment:
| Q |
32 |
aaaaaattgggaaatgagagcaaatgaatcatatctacaattgtgtttgaatcgttctcatcat |
95 |
Q |
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| T |
3897585 |
aaaatattggtaaatgagagcaaatgattcatatatacaattatgtttgaatcgttctcatcat |
3897648 |
T |
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