View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5546-Insertion-5 (Length: 462)
Name: NF5546-Insertion-5
Description: NF5546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5546-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 453
Target Start/End: Complemental strand, 2582609 - 2582156
Alignment:
| Q |
7 |
ataatcgttgacaaatgaatgtgttactaactttcacaatccctc--nnnnnnnnnttatactcacaact-ctttctat----ataattaaagccaattg |
99 |
Q |
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| T |
2582609 |
ataatcgttgacaaatgaatgtgttactaactttcgcaatccctccaaaaaaaaaatattactcataagtcctttctatataaataattaaagccaattg |
2582510 |
T |
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| Q |
100 |
aaaacacaaattgtatagcacaaaccttaaaccttgtaaacattgaacatgtctttcttcaaatcctatggaaaagtagatgaacgtgatcaaatgatgt |
199 |
Q |
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| T |
2582509 |
aaaacacaaattgtatagcacaaaccttaaaccttgtaaacattgaacatgtctttcttcaaatcctatggaaaagttgatgaacatgatcaaatgatgt |
2582410 |
T |
|
| Q |
200 |
tagaagcaaaaagaaaaacccgaaagagaatcacaatcataagcttatcctcaataatcttcattggtgttgtaattgcagctgtattaggagttgttaa |
299 |
Q |
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| T |
2582409 |
tagaagcaaaaagaaaaacccgaaagagaatcacaatcataagcttatcttcaataatcttcattggtgttgtaattgcagctgtattaggagttgttaa |
2582310 |
T |
|
| Q |
300 |
ctcaaaaaatgatgatgataacaacaataatgcatctcaaaattcagtgactaattctatgaaagctgtttgtgatgttacattgtacaaagattcatgt |
399 |
Q |
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| T |
2582309 |
ctcaaaaaatgatgatgataacaacaataatgcatctcaaaattcagtgactaattctatgaaagctgtttgtgatgttacattgtacaaagattcatgt |
2582210 |
T |
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| Q |
400 |
tatgacagtcttagttctattgttggcccaggaaaagaggttcatccagaggag |
453 |
Q |
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| T |
2582209 |
tataacagtcttagttctattgttggctcaggaaaagaggttcaacctgaggag |
2582156 |
T |
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