View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5546-Insertion-7 (Length: 437)

Name: NF5546-Insertion-7
Description: NF5546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5546-Insertion-7
NF5546-Insertion-7
[»] chr1 (7 HSPs)
chr1 (8-345)||(31077932-31078269)
chr1 (12-340)||(31131963-31132291)
chr1 (9-340)||(31127255-31127586)
chr1 (373-437)||(31077840-31077904)
chr1 (373-421)||(31128854-31128902)
chr1 (373-433)||(31127162-31127222)
chr1 (373-434)||(31131869-31131930)


Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 31078269 - 31077932
Alignment:
Q  8 aaaagttccatctggcaaaacatcatcgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagta 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31078269 aaaagttccatctggcaaaacatcattgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagta 31078170  T
Q  108 taaaccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtaacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31078169 taaaccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtagcc 31078070  T
Q  208 aaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaact 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31078069 aaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaact 31077970  T
Q  308 taaaaaccgcgataaaagatcaactgattccaaagttg 345  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31077969 taaaaaccgcgataaaagatcaactgattccaaagttg 31077932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 31132291 - 31131963
Alignment:
Q  12 gttccatctggcaaaacatcatcgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtataaa 111  Q
    |||||||||||||||||||||||||| |||||||| |||| |||||||| ||||||||| |  | ||||||||||||||||||||| |||||||| ||||    
T  31132291 gttccatctggcaaaacatcatcgtaggctgcttccttagcatccactgaaactggagggtccattctcatactctcgcataacgatgcatgagtgtaaa 31132192  T
Q  112 ccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtaaccaaaa 211  Q
    |||||| |||||||||||||| |||||||||   ||||||||  ||||||||||| ||||| |||||||| ||||||||||||||||||| |||| ||||    
T  31132191 ccatattcttcacctcatcgttactaactatcattgattttctagtaatctctttaagaatctcattctctacatgactatgcttagagattaacaaaaa 31132092  T
Q  212 gaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaa 311  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||    
T  31132091 gaaccacgtgagtgcagctgaagttgtatctctcccagcaagaataaagcttatcacaatatcaactacaaaagattcgtccgaatgaccagaacttaaa 31131992  T
Q  312 aaccgcgataaaagatcaactgattccaa 340  Q
    || ||||| |||| ||| || ||||||||    
T  31131991 aatcgcgacaaaatatccaccgattccaa 31131963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 9 - 340
Target Start/End: Complemental strand, 31127586 - 31127255
Alignment:
Q  9 aaagttccatctggcaaaacatcatcgtacgctgcttctttagtatccactggaactggaggataaagtctcatactctcgcataacgacgcatgagtat 108  Q
    ||||||||||| |||||||| || ||  | || ||||| |||  |||||| ||||| |||||||| |||||||||||||| ||||| | ||||||||| |    
T  31127586 aaagttccatccggcaaaacgtcgtcacaagccgcttccttaccatccacgggaaccggaggatacagtctcatactctcacataaagccgcatgagtgt 31127487  T
Q  109 aaaccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtaacca 208  Q
    ||||||||||||||||||||| |||| ||||  |||| ||||||||  |||  || || ||||| |||||||||||||||||||||||||||||||||||    
T  31127486 aaaccatatccttcacctcattgtaattaaccgtttccgattttcccataacttcctttagaatctcattctccacatgactatgcttagagagtaacca 31127387  T
Q  209 aaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaactt 308  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||    
T  31127386 aaagaaccaagtgagtgcagctgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaactt 31127287  T
Q  309 aaaaaccgcgataaaagatcaactgattccaa 340  Q
    ||||| || |||| || ||| | |||||||||    
T  31127286 aaaaatcgtgatagaatatccaatgattccaa 31127255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 31077904 - 31077840
Alignment:
Q  373 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatc 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31077904 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatc 31077840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 31128902 - 31128854
Alignment:
Q  373 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttcttt 421  Q
    |||||||||||||||| || ||||||||||||||| |||||||||||||    
T  31128902 ccctaacgattcttgtggcgagtcctcttacttcaacgacggcttcttt 31128854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 433
Target Start/End: Complemental strand, 31127222 - 31127162
Alignment:
Q  373 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctc 433  Q
    |||||||||||||||| || |||||||||||||||||  | |||||||| || ||||||||    
T  31127222 ccctaacgattcttgtggcgagtcctcttacttcagcagcagcttcttttaaccgtcgctc 31127162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 434
Target Start/End: Complemental strand, 31131930 - 31131869
Alignment:
Q  373 ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcg 434  Q
    ||||||| ||| |||| || || || |||||||||||||| ||||||||||| |||||||||    
T  31131930 ccctaacaatttttgtggcgagcccccttacttcagcgacagcttctttcaaccgtcgctcg 31131869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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