View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5546_low_1 (Length: 640)
Name: NF5546_low_1
Description: NF5546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5546_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 496 - 631
Target Start/End: Original strand, 12830410 - 12830545
Alignment:
| Q |
496 |
accttgaggcaagtatcactaatatgaacactacaaatttaatatcactaaaaccgaaaatgattatgttgcaagttaatagaataaaaggacaaaattc |
595 |
Q |
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| T |
12830410 |
accttgaggcaagtatcactaatatgaacactacaaatttaatatcactaaaaccgaaaatgattattttgcaagttaatagaataaaaggacaaaattc |
12830509 |
T |
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| Q |
596 |
ttacaaatattaatgaataaaagtgacaagtataat |
631 |
Q |
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| T |
12830510 |
ttacaaatattaatgaataaaagtgacaagtataat |
12830545 |
T |
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