View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5546_low_2 (Length: 442)
Name: NF5546_low_2
Description: NF5546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5546_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 427
Target Start/End: Complemental strand, 39298349 - 39297933
Alignment:
| Q |
15 |
ggcaaatgttggtgataaaatgaagaaaccatttgaaaacatgacaagttcaggtcaagtacaaggaggaagtgataaaccattaggaggaagtgatgta |
114 |
Q |
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| T |
39298349 |
ggcaaatgttggtgataaaatgaagaaaccatttgaaaacatgacaagtacaggtcaagtacaaggaggaagtgataaaccattaggaggaagtgatgta |
39298250 |
T |
|
| Q |
115 |
ttgggagctgtgactgaaactgtgagtgatattggaaataacatggttaaagcaacagataatagtaaagttaatctttctcaagagggacaaggtggtg |
214 |
Q |
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| T |
39298249 |
ttgggagctgtgactgaaactgtgagtgatattggaaataacatggttaaagcaacagataatagtaaagttaatatttctcaagagggacaaggtggtg |
39298150 |
T |
|
| Q |
215 |
gtgttttggatgctattggtgaaaccatagctgaaattgcacatacaactaaagtcattgttgttggtgaggatgatgaagtagtacatgagtcaaggaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
39298149 |
gtgttttggatgctattggtgaaaccatagctgaaattgcacatacaactaaagtcattgttgttggtgaggatgatgaagtattagatgagtcaaggaa |
39298050 |
T |
|
| Q |
315 |
gaatattgggtcagagtctcactcaagtggtcgtgccaaacatgaaggccatccagcatcaaagaatgttttctaaattacatgg----atatgtttagt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
39298049 |
gaatattgggtcagagtctcactcaagtggtcgtgccaaacatgaaggccatccagcatcaaagaatgttttctaaattccatggatatatatgtttagt |
39297950 |
T |
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| Q |
411 |
aatgtgttaagcttatt |
427 |
Q |
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||||||||||||||||| |
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| T |
39297949 |
aatgtgttaagcttatt |
39297933 |
T |
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