View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5546_low_4 (Length: 260)
Name: NF5546_low_4
Description: NF5546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5546_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 40588287 - 40588057
Alignment:
| Q |
9 |
ggagtagcaaagggagtgatggaaaggtttgagataggtaatgttcctatggagttaaggtatgtacaatttgtgagtcttcctctaatatgttttagga |
108 |
Q |
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| T |
40588287 |
ggagtagctaagggagtgatggaaaggtttgagataggtgatgttcctatggagttaaggtatgtacaatttgtgagtcttcctctaatatgttttagga |
40588188 |
T |
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| Q |
109 |
atattagtaaagaggaagttgaaaagaaatttgtggaagttagaagccttgtgaaaagctatatgggaagaggggttattctttatttaggtgatttaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40588187 |
atattagtaaagaggaagttgaaaagaaatttgtggaagttagaagccttgtgaaaagctatatgggaagaggggttattctttatttaggtgatttaaa |
40588088 |
T |
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| Q |
209 |
atggttgtttgaattttggtcaagttactgt |
239 |
Q |
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|||||||||||| |||||||||||||||||| |
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| T |
40588087 |
atggttgtttgagttttggtcaagttactgt |
40588057 |
T |
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