View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5547_high_4 (Length: 307)
Name: NF5547_high_4
Description: NF5547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5547_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 148 - 300
Target Start/End: Complemental strand, 5432385 - 5432233
Alignment:
| Q |
148 |
gtaacagcgcagctgaagcaatttcgaggccaacagaaatcgaacgaattctcttcgccgccgtcaatggggactcaaacggctcctcctccacctccgc |
247 |
Q |
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| T |
5432385 |
gtaacagcgcagctgaagcaatttcgaggccaacagaaatcgaacgaattctcttcgccgccgtcaatggggactcaaacggctcctcctccacctccgc |
5432286 |
T |
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| Q |
248 |
cgccgcctaaggaacccttcattaagcgctacaagtttgtttggcctatgcta |
300 |
Q |
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| T |
5432285 |
cgctgcctaaggaacccttcattaagcgctacaagttcgtttggcctatgcta |
5432233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 5432515 - 5432460
Alignment:
| Q |
25 |
tgctgatcatgcttcttctccaaaactatataatcacaaacccaaaaaatgtacta |
80 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5432515 |
tgctgatcatgcttcttctccaaaactatataatcacaaacccaaaaaatgtacta |
5432460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 284
Target Start/End: Complemental strand, 5438869 - 5438739
Alignment:
| Q |
148 |
gtaacagcgcagctgaagcaatttcgaggccaacagaaatcgaacgaattctcttcgccgccgtcaatggggactcaaacggctcctcctccacctccgc |
247 |
Q |
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| T |
5438869 |
gtaacagcgcaactgaagcaatttcaagggca---gaaatcgaacgagttctcttcgcagtcgtcgatgggggcacaaacggctcctcct---ccgccgc |
5438776 |
T |
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| Q |
248 |
cgccgcctaaggaacccttcattaagcgctacaagtt |
284 |
Q |
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| T |
5438775 |
cgctacctaaggaaccctttattaagcactacaagtt |
5438739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 5438992 - 5438940
Alignment:
| Q |
25 |
tgctgatcatgcttcttctccaaaactatataatcacaaacccaaaaaatgta |
77 |
Q |
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||||||||| | |||||||||||| || ||||||||||||||||||| ||||| |
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| T |
5438992 |
tgctgatcacggttcttctccaaagctttataatcacaaacccaaaatatgta |
5438940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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