View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5547_high_8 (Length: 234)
Name: NF5547_high_8
Description: NF5547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5547_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 4360189 - 4360263
Alignment:
| Q |
73 |
ggagaggattgcaatattaagtttgattaaaaaagctttcagtttaaatttcaaacctgactataatcccaaata |
147 |
Q |
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| T |
4360189 |
ggagaggattgcaatattgagtttgattaaaaaagctttcagtttaaatttcaaacctgactataatcccaaata |
4360263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 4360109 - 4360164
Alignment:
| Q |
18 |
ataatagtatagacagaacccacatagtagtccataaataaaaatagtaaataatg |
73 |
Q |
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| T |
4360109 |
ataatagtataaacaaaatccacatagtagtacataaatcaaaataataaataatg |
4360164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 4360279 - 4360320
Alignment:
| Q |
143 |
aaatacgtatacatggaaaattttgaaagaaaaagtaatact |
184 |
Q |
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| T |
4360279 |
aaatacgtatgcatgtaatattttgaaagaaaaagtaatact |
4360320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 4360722 - 4360762
Alignment:
| Q |
181 |
tactaaactaacgcatattggtactaaaaacatgtctctgc |
221 |
Q |
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| T |
4360722 |
tactaaactatcgtatattggtattaaaaacatgtctctgc |
4360762 |
T |
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