View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5547_low_1 (Length: 642)

Name: NF5547_low_1
Description: NF5547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5547_low_1
NF5547_low_1
[»] chr7 (19 HSPs)
chr7 (9-542)||(45661833-45662376)
chr7 (404-542)||(28514612-28514752)
chr7 (404-518)||(48488422-48488538)
chr7 (404-542)||(31191347-31191486)
chr7 (404-542)||(10624920-10625060)
chr7 (404-542)||(28646618-28646758)
chr7 (404-538)||(45618450-45618586)
chr7 (404-520)||(19086301-19086419)
chr7 (404-510)||(37869722-37869830)
chr7 (404-542)||(25119945-25120085)
chr7 (429-542)||(23247756-23247870)
chr7 (435-518)||(1111733-1111818)
chr7 (404-517)||(40198961-40199077)
chr7 (404-464)||(23825370-23825430)
chr7 (462-518)||(48339137-48339193)
chr7 (462-525)||(23466207-23466270)
chr7 (471-518)||(34823568-34823615)
chr7 (471-516)||(8584146-8584191)
chr7 (471-527)||(29994538-29994594)
[»] chr4 (22 HSPs)
chr4 (406-537)||(43142033-43142163)
chr4 (404-542)||(31861555-31861694)
chr4 (404-542)||(41735400-41735540)
chr4 (430-541)||(3121033-3121146)
chr4 (404-518)||(37624825-37624941)
chr4 (416-542)||(9093596-9093724)
chr4 (404-542)||(52270438-52270578)
chr4 (404-518)||(26876082-26876198)
chr4 (404-518)||(35808688-35808804)
chr4 (429-542)||(8680532-8680646)
chr4 (429-518)||(25231534-25231625)
chr4 (414-542)||(2168427-2168557)
chr4 (404-539)||(41621889-41622026)
chr4 (404-542)||(24504649-24504789)
chr4 (404-537)||(10097923-10098058)
chr4 (404-541)||(16958365-16958503)
chr4 (406-542)||(46737406-46737545)
chr4 (429-542)||(42183371-42183486)
chr4 (404-541)||(43594954-43595092)
chr4 (469-537)||(29235599-29235667)
chr4 (439-518)||(56040333-56040412)
chr4 (497-534)||(31309045-31309082)
[»] chr3 (10 HSPs)
chr3 (404-542)||(45249363-45249503)
chr3 (469-542)||(31580364-31580437)
chr3 (404-518)||(8108210-8108325)
chr3 (404-517)||(23919141-23919256)
chr3 (451-514)||(52525490-52525555)
chr3 (404-539)||(53466232-53466368)
chr3 (404-542)||(48993337-48993476)
chr3 (435-542)||(27213970-27214079)
chr3 (404-519)||(39611626-39611742)
chr3 (404-518)||(6488787-6488903)
[»] chr2 (18 HSPs)
chr2 (404-542)||(38402511-38402651)
chr2 (404-542)||(39791506-39791646)
chr2 (406-542)||(19955052-19955190)
chr2 (404-542)||(36903936-36904076)
chr2 (404-542)||(223894-224034)
chr2 (404-542)||(6563053-6563191)
chr2 (404-542)||(9559624-9559764)
chr2 (405-521)||(41283333-41283450)
chr2 (404-500)||(9047603-9047701)
chr2 (406-542)||(13490815-13490953)
chr2 (404-518)||(15335832-15335948)
chr2 (435-517)||(4428778-4428862)
chr2 (471-537)||(16471198-16471264)
chr2 (464-533)||(14812340-14812409)
chr2 (471-542)||(7271118-7271188)
chr2 (464-542)||(13530609-13530687)
chr2 (497-542)||(248089-248134)
chr2 (464-537)||(879450-879523)
[»] chr8 (17 HSPs)
chr8 (404-542)||(38573265-38573405)
chr8 (404-542)||(13018462-13018602)
chr8 (404-511)||(7642604-7642713)
chr8 (448-542)||(24999436-24999532)
chr8 (469-542)||(12763330-12763403)
chr8 (404-518)||(23518197-23518313)
chr8 (404-542)||(36642703-36642843)
chr8 (404-533)||(12978228-12978359)
chr8 (488-542)||(44395635-44395689)
chr8 (478-542)||(11611574-11611638)
chr8 (425-542)||(515144-515261)
chr8 (404-542)||(13177758-13177898)
chr8 (450-533)||(1090008-1090091)
chr8 (404-518)||(1769147-1769260)
chr8 (404-519)||(42446554-42446671)
chr8 (476-518)||(45079361-45079403)
chr8 (464-537)||(10328648-10328721)
[»] chr1 (16 HSPs)
chr1 (404-537)||(3831385-3831519)
chr1 (404-542)||(34038801-34038938)
chr1 (404-542)||(894753-894893)
chr1 (404-518)||(5892669-5892785)
chr1 (404-539)||(36563830-36563965)
chr1 (404-516)||(38067715-38067829)
chr1 (404-518)||(32213511-32213625)
chr1 (404-539)||(42410199-42410336)
chr1 (404-498)||(1795826-1795922)
chr1 (404-500)||(10040419-10040515)
chr1 (434-518)||(11818159-11818245)
chr1 (435-519)||(13984278-13984364)
chr1 (464-539)||(35365591-35365666)
chr1 (464-525)||(3527750-3527811)
chr1 (506-542)||(4552130-4552166)
chr1 (404-537)||(51049799-51049934)
[»] chr5 (17 HSPs)
chr5 (429-542)||(32292246-32292361)
chr5 (404-542)||(15476861-15477001)
chr5 (404-542)||(25713326-25713465)
chr5 (404-542)||(34338879-34339019)
chr5 (404-541)||(8713754-8713892)
chr5 (437-518)||(36487211-36487294)
chr5 (406-542)||(26362253-26362391)
chr5 (476-542)||(10285333-10285398)
chr5 (464-542)||(31006305-31006385)
chr5 (404-541)||(29045335-29045474)
chr5 (476-542)||(1056557-1056623)
chr5 (404-518)||(1088214-1088330)
chr5 (404-464)||(10284984-10285044)
chr5 (404-518)||(606685-606801)
chr5 (469-542)||(37447304-37447377)
chr5 (442-531)||(14662965-14663056)
chr5 (469-537)||(16054441-16054509)
[»] chr6 (5 HSPs)
chr6 (404-542)||(32147872-32148012)
chr6 (404-542)||(6100667-6100807)
chr6 (404-542)||(33134191-33134332)
chr6 (464-532)||(31631890-31631958)
chr6 (465-537)||(24810685-24810757)
[»] scaffold0002 (1 HSPs)
scaffold0002 (404-542)||(433879-434017)


Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 9 - 542
Target Start/End: Original strand, 45661833 - 45662376
Alignment:
Q  9 gattatactgaatagaataaccatgagattgctactatgtactaagcttttgataatggttgatgtgtgttttatagtacatgtgtgcttgtatgattgg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45661833 gattatactgaatagaataaccatgagattgctactatgtactaagcttttgataatggttgatgtgtgttttatagtacatgtgtgcttgtatgattgg 45661932  T
Q  109 tttgctattgttggctctggcttgatcttgtgttcagattttaaaggccttcttttttgacttgttcttatagttataaggtaattaagttgattcacct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45661933 tttgctattgttggctctggcttgatcttgtgttcagattttaaaggccttcttttttgacttgttcttatagttataaggtaattaagttgattcacct 45662032  T
Q  209 tgatttttaattggctgttaagtaattttcaatagtaagcactacttcatataaatacaattttgctctagcaaaaggatgtaacaagtaacgacacaca 308  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45662033 tgatttgtaattggctgtttagtaattttcaatagtaagcactacttcatataaatacaattttgctctagcaaaaggatgtaacaagtaacgacacaca 45662132  T
Q  309 ctggtgtttaagagcaattacttggctcatactttctcatctcattttatttatcttgttcacacaatatttttagaaaaatgttaacgagtgtc----- 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         
T  45662133 ctggtgtttaagagcaattacttggctcatactttctcatctcattttatttatcttgttcacaaaatatttttagaaaaatgttaacgagtgtcttaag 45662232  T
Q  404 -----tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtatgacttatattttcaaaacataatttcttt 498  Q
         ||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45662233 ggtattgtttaagcatctaaaagtaataatttttatattggaaattgcacggttatgactttaacatgtatgacttatattttc-aaacataatttcttt 45662331  T
Q  499 ttatggg-ttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  45662332 ttatgggattccttaaacaatactcttaagacacttgttaacaag 45662376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 28514752 - 28514612
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||| |||||||||||||||||||| |||| ||||  ||| ||||||||||||||||  |||||||||||||||    
T  28514752 tgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataacttgaacaagtgtttgacttatattttcaaggcataatttcttttta 28514653  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||| | |||| | ||||||||||||||    
T  28514652 tgggttccttaaacaatgcccttagggcacttgttaacaag 28514612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 404 - 518
Target Start/End: Original strand, 48488422 - 48488538
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||| |||||||||||||||||||| |||| ||||  ||| ||||||||||||||||| |||||||||||||||    
T  48488422 tgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataacttcaacaagtgtttgacttatattttcaaagcataatttcttttta 48488521  T
Q  502 tgggttccttaaacaat 518  Q
    |||||||||||||||||    
T  48488522 tgggttccttaaacaat 48488538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 31191486 - 31191347
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||  ||||||||||| |||||||| |||||||||  ||| ||||||||||||||||  |||||||||||||||    
T  31191486 tgtttaagcatctaaaagtagcaacttttacattggaaattgcacggttataactttaacaagtgtttgacttatattttcaaggcataatttcttttta 31191387  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    | ||||||||||||||| | |||| | ||||||||||||||    
T  31191386 t-ggttccttaaacaatgcccttagggcacttgttaacaag 31191347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 10625060 - 10624920
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||| ||||| ||||| ||  || ||||| |||| ||||||||||||||||||| ||| |  ||| |||||| ||||||||| |||||||||||||||     
T  10625060 tgtttcagcatataaaagtagaaacttttgcattgaaaattgtacggttatgactataataagtgtttgacttgtattttcaagacataatttctttttg 10624961  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||| ||||||||| | ||||  |||||||||||||||    
T  10624960 tgggttctttaaacaatgcccttagaacacttgttaacaag 10624920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 542
Target Start/End: Original strand, 28646618 - 28646758
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||  ||||||||||||||||||||||||||||||  | | ||||||||||||| || |||||||||||||||     
T  28646618 tgtttaagcatataaaagtagcaacttttacattggaaattgtacggttatgactttaacaaatttttgacttatatttttaagacataatttctttttg 28646717  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    | | ||| ||||||||||  ||||||| | |||||||||||    
T  28646718 tagattctttaaacaatatccttaagataattgttaacaag 28646758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 538
Target Start/End: Original strand, 45618450 - 45618586
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| || || ||  || ||||| |||| ||||||||| ||| ||||||||| |  |||  ||||||||||||||| |||||||||| |||||    
T  45618450 tgtttaagcatatagaagtagcaacttttgcattgaaaattgtaccgttgtgactttaataaatatttgacttatattttcaagacataatttcctttta 45618549  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaa 538  Q
    ||||||||||||||||||| |||| | ||||||||||    
T  45618550 tgggttccttaaacaatacccttagggcacttgttaa 45618586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 404 - 520
Target Start/End: Complemental strand, 19086419 - 19086301
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    |||||||| || |||||||| |||||||||  |||||||||||||||| || |||| ||||  ||| ||||||||||||||||  |||||||||||||||    
T  19086419 tgtttaagaatctaaaaatagtaatttttgctttggaaattgtacggtaataacttcaacaagtgtttgacttatattttcaaggcataatttcttttta 19086320  T
Q  502 tgggttccttaaacaatac 520  Q
    ||| ||  |||||||||||    
T  19086319 tggattttttaaacaatac 19086301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 510
Target Start/End: Original strand, 37869722 - 37869830
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    |||||||| || ||||| ||  || ||||| |||| |||||||||||||||||||||||||  ||| ||||||||||||| ||||||||||||||||||     
T  37869722 tgtttaagtatataaaagtagcaacttttgcattgaaaattgtacggttatgactttaacaagtgtttgacttatatttttaaaacataatttctttttg 37869821  T
Q  502 tgggttcct 510  Q
    || ||||||    
T  37869822 tgagttcct 37869830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 404 - 542
Target Start/End: Original strand, 25119945 - 25120085
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||| |||  |||||||| |||||| |||||||||| |||  || || ||||||||| ||| |||||||||||     
T  25119945 tgtttaagcatataaaagtagcaacttttgcattataaattgtatggttataactttaacatatatttgaattgtattttcaagacacaatttctttttg 25120044  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||| ||||||||||||||| |||| | ||||||||| ||||    
T  25120045 tggattccttaaacaatacccttagggcacttgttagcaag 25120085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 429 - 542
Target Start/End: Original strand, 23247756 - 23247870
Alignment:
Q  429 ttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaa 526  Q
    ||||| ||||||||||| |||||||| |||| ||||  ||| ||||||||||||||||  |||||||||||||||||| || || ||||||| | ||| |    
T  23247756 ttttgcattggaaattgaacggttataacttcaacaagtgtttgacttatattttcaaggcataatttctttttatggattactaaaacaatgccctt-a 23247854  T
Q  527 gacacttgttaacaag 542  Q
    |||||||||| |||||    
T  23247855 gacacttgtttacaag 23247870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 435 - 518
Target Start/End: Original strand, 1111733 - 1111818
Alignment:
Q  435 attggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaat 518  Q
    |||| |||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||  ||||| ||||||| |||| ||||    
T  1111733 attgaaaattgtatggttatgactttaacaagtgtttgacttatattttcaaaacataattattttttgtgggttctttaagcaat 1111818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 517
Target Start/End: Original strand, 40198961 - 40199077
Alignment:
Q  404 tgtttaagcatttaaaaataataattttt-gtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttt 500  Q
    ||||||||||| ||||| ||  ||||||| | ||||| ||||||| |||||| ||| |||||  ||| | ||||||||||||||  ||||||||||||||    
T  40198961 tgtttaagcatctaaaagtagcaattttttgcattgggaattgtatggttataactctaacaagtgtctaacttatattttcaaggcataatttcttttt 40199060  T
Q  501 atgggttccttaaacaa 517  Q
    |||| ||| ||||||||    
T  40199061 atggattctttaaacaa 40199077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 464
Target Start/End: Complemental strand, 23825430 - 23825370
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca 464  Q
    ||||||||  ||||||||||||||||||| |||| |||||| ||||||||| |||||||||    
T  23825430 tgtttaagtttttaaaaataataatttttatattagaaattatacggttataactttaaca 23825370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 518
Target Start/End: Original strand, 48339137 - 48339193
Alignment:
Q  462 acatgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaat 518  Q
    |||||| |||||||||||||||| ||  ||||||||||| ||||||| |||||||||    
T  48339137 acatgtgtgacttatattttcaagacgaaatttctttttgtgggttctttaaacaat 48339193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 525
Target Start/End: Complemental strand, 23466270 - 23466207
Alignment:
Q  462 acatgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactctta 525  Q
    |||||| |||||||||||||||| | | ||||||||   |||| ||||||||||||||||||||    
T  23466270 acatgtttgacttatattttcaatatacaatttcttacaatggattccttaaacaatactctta 23466207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 518
Target Start/End: Original strand, 34823568 - 34823615
Alignment:
Q  471 acttatattttcaaaacataatttctttttatgggttccttaaacaat 518  Q
    |||||||||||||| |||||||||  ||||||||||||||||| ||||    
T  34823568 acttatattttcaagacataattttcttttatgggttccttaagcaat 34823615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 516
Target Start/End: Original strand, 8584146 - 8584191
Alignment:
Q  471 acttatattttcaaaacataatttctttttatgggttccttaaaca 516  Q
    |||||||||||||| | ||||||| ||||||||| |||||||||||    
T  8584146 acttatattttcaagatataatttatttttatggattccttaaaca 8584191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 471 - 527
Target Start/End: Complemental strand, 29994594 - 29994538
Alignment:
Q  471 acttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaag 527  Q
    |||||||||||||| ||| |||||  ||||||| ||| ||||||||||| |||||||    
T  29994594 acttatattttcaagacaaaattttattttatgagtttcttaaacaatattcttaag 29994538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 406 - 537
Target Start/End: Complemental strand, 43142163 - 43142033
Alignment:
Q  406 tttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtatgacttatattttcaaaacataatttctttttatggg 505  Q
    ||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||||  | |||||||||||||||| ||||||||||||||| ||||    
T  43142163 tttaagcatataaaagtaataatttttgcattggaaattgtaaggttatgactttaacaatt-tgacttatattttcaagacataatttctttttgtggg 43142065  T
Q  506 ttccttaaacaatactcttaagacacttgtta 537  Q
    |||||||||||||| |||||  ||||||||||    
T  43142064 ttccttaaacaatagtcttagaacacttgtta 43142033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 404 - 542
Target Start/End: Original strand, 31861555 - 31861694
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||| |||||||||||| ||||||| | |||||||  ||| |||||||||||||||| ||||||||||||||||    
T  31861555 tgtttaagcatctaaaa-tagcaacttttgcattggaaattgtccggttataattttaacaagtgtttgacttatattttcaagacataatttcttttta 31861653  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||| |||||||||||||||||||| ||||||||||||||||    
T  31861654 tggattccttaaacaatactcttaggacacttgttaacaag 31861694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 41735540 - 41735400
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  |||||||||||||||||||||||| ||||||||||||||  ||| |||||| ||||||||| |||||||||||||||     
T  41735540 tgtttaagcatctaaaagtagcaatttttgtattggaaattgtacgattatgactttaacaagtgtttgacttgtattttcaagacataatttctttttg 41735441  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    || ||| ||||||||||| ||||| | ||||||||||||||    
T  41735440 tgagtttcttaaacaatattcttagggcacttgttaacaag 41735400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 430 - 541
Target Start/End: Complemental strand, 3121146 - 3121033
Alignment:
Q  430 tttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaag 527  Q
    |||| |||| ||||||||||||||| |||| ||||  ||  |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |    
T  3121146 tttgcattgaaaattgtacggttataacttcaacaaatgattgacttatattttcaagacataatttctttttatgggttccttaaacaatgctcttagg 3121047  T
Q  528 acacttgttaacaa 541  Q
    ||||||||||||||    
T  3121046 acacttgttaacaa 3121033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 404 - 518
Target Start/End: Complemental strand, 37624941 - 37624825
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| || ||| ||||| |||| ||||||||||||||| |||||||||  ||| ||||||||||||||||| ||| |||||||||||    
T  37624941 tgtttaagcatctaaaagtagtaacttttgcattgaaaattgtacggttataactttaacaagtgtttgacttatattttcaaagcattatttcttttta 37624842  T
Q  502 tgggttccttaaacaat 518  Q
    |||||||||||||||||    
T  37624841 tgggttccttaaacaat 37624825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 416 - 542
Target Start/End: Original strand, 9093596 - 9093724
Alignment:
Q  416 taaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttctttttatgggttccttaa 513  Q
    ||||| || ||||||||| |||| ||||||||||||||| |||| ||||  ||| ||||||||||||||||  || ||||||||||||||||||||||||    
T  9093596 taaaagtagtaatttttgcattgaaaattgtacggttataacttaaacaagtgtttgacttatattttcaaggcaaaatttctttttatgggttccttaa 9093695  T
Q  514 acaatactcttaagacacttgttaacaag 542  Q
    |||||   |||| ||||||||||||||||    
T  9093696 acaatgtccttaggacacttgttaacaag 9093724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 52270578 - 52270438
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||||||  || ||||| |||||||||||||||  ||||||| |||||  ||| |||||||||||||||| ||||| |||| ||||     
T  52270578 tgtttaagcatataaaaatagcaacttttgcattggaaattgtacgagtatgactgtaacaagtgtttgacttatattttcaagacatattttccttttg 52270479  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||| | |||| | ||||||||||||||    
T  52270478 tgggttccttaaacaatgcccttagggcacttgttaacaag 52270438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 518
Target Start/End: Original strand, 26876082 - 26876198
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  |  ||||||||||||||||||| |||||||||||||| |  ||| |||||| |||||||||  ||||||||||||||     
T  26876082 tgtttaagcatataaaagtagcagcttttgtattggaaattgtagggttatgactttaagaagtgtttgacttgtattttcaagccataatttctttttt 26876181  T
Q  502 tgggttccttaaacaat 518  Q
    |||||||||||||||||    
T  26876182 tgggttccttaaacaat 26876198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 518
Target Start/End: Complemental strand, 35808804 - 35808688
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||| |||| ||||||||||||||| |||| |||   ||| |||||||||||||||| | ||||||||||||||    
T  35808804 tgtttaagcatctaaaagtagcaacttttgcattgaaaattgtacggttataacttcaactagtgtttgacttatattttcaagatataatttcttttta 35808705  T
Q  502 tgggttccttaaacaat 518  Q
    |||||||||||||||||    
T  35808704 tgggttccttaaacaat 35808688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 429 - 542
Target Start/End: Original strand, 8680532 - 8680646
Alignment:
Q  429 ttttgtattggaaattgtacggttatgactttaac--atgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaa 526  Q
    ||||| ||||||||||||||| |||||||||||||  |||| | |||||||||||||||||||| ||||  ||||||||||||||||||||  | |||||    
T  8680532 ttttgcattggaaattgtacgattatgactttaacaaatgttttacttatattttcaaaacatattttc-ctttatgggttccttaaacaacgcccttaa 8680630  T
Q  527 gacacttgttaacaag 542  Q
     |||||| ||||||||    
T  8680631 aacacttattaacaag 8680646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 429 - 518
Target Start/End: Original strand, 25231534 - 25231625
Alignment:
Q  429 ttttgtattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttctttttatgggttccttaaacaat 518  Q
    ||||| |||||||||||||||||||| |||| ||||  |||  ||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  25231534 ttttgcattggaaattgtacggttataacttcaacaaatatttgacttatattttcaagacataatttctttttatggattccttaaacaat 25231625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 414 - 542
Target Start/End: Complemental strand, 2168557 - 2168427
Alignment:
Q  414 tttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttctttttatgggttcctt 511  Q
    ||||||| ||| || ||||| |||| |||||||||||||| ||||||||||  ||| |||||| ||||||||  ||||||||| ||||||||||||| ||    
T  2168557 tttaaaagtaacaacttttgcattgaaaattgtacggttacgactttaacaagtgtttgacttgtattttcaggacataatttatttttatgggttcttt 2168458  T
Q  512 aaacaatactcttaagacacttgttaacaag 542  Q
    |||||||   |||| | ||||||||||||||    
T  2168457 aaacaatgtccttagggcacttgttaacaag 2168427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 404 - 539
Target Start/End: Complemental strand, 41622026 - 41621889
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgta--tgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||  |||| |||||||||| |||||||||||||| ||   ||| || ||||||||| |||||||||||||||     
T  41622026 tgtttaagcatataaaagtagcaacttttacattgaaaattgtacgattatgactttaacaagtgattgatttgtattttcaagacataatttctttttg 41621927  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaac 539  Q
    ||||||||||||||||| | |||| | |||||||||||    
T  41621926 tgggttccttaaacaatgcccttagggcacttgttaac 41621889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 24504789 - 24504649
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgta--tgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||||||  || |||||||||  ||||||||||||||| ||||||| | |||  |||| |||||||| || | ||||||  |||||     
T  24504789 tgtttaagcatctaaaaatatcaacttttgtattaaaaattgtacggttataactttaataagtatttgacatatattttaaagatataattattttttt 24504690  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||| ||||||||||||||  |||||| ||||||||||||||    
T  24504689 tggattccttaaacaataaccttaaggcacttgttaacaag 24504649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 404 - 537
Target Start/End: Original strand, 10097923 - 10098058
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttcttttta 501  Q
    ||||||| | || ||||| | |||||||| ||||| ||||||||  ||||||||||| ||||||||  | ||||||||||||| ||| ||||||| |||     
T  10097923 tgtttaacctttcaaaaacagtaatttttatattgaaaattgtatagttatgacttttacatgtatttgccttatattttcaagacaaaatttctctttg 10098022  T
Q  502 tgggttccttaaacaatactcttaagacacttgtta 537  Q
    ||| |||||||||||||| | ||| |||||||||||    
T  10098023 tggattccttaaacaatatttttaggacacttgtta 10098058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 404 - 541
Target Start/End: Original strand, 16958365 - 16958503
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||  ||||||||||| ||| |||| |||| ||||  ||| |||||||||||||||| ||||||||||||||||    
T  16958365 tgtttaagcatctaaaagtagcaacttttacattggaaattgcacgtttataacttcaacaagtgtttgacttatattttcaagacataatttcttttta 16958464  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaa 541  Q
    ||| ||||||||| ||| | | | ||||||||||||||||    
T  16958465 tggattccttaaataatgc-cctcagacacttgttaacaa 16958503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 406 - 542
Target Start/End: Complemental strand, 46737545 - 46737406
Alignment:
Q  406 tttaagcatttaaaaataataatttttgtattggaaattgtacggttatgacttt-aaca--tgtatgacttatattttcaaaacataatttctttttat 502  Q
    ||||||||| ||||||||  || ||||| |||| |||||||||| || ||||||| ||||  ||| | |||||||||||||| |||| |||||||||| |    
T  46737545 tttaagcatataaaaatatcaacttttgcattgaaaattgtacgattgtgacttttaacaaatgtttaacttatattttcaagacatgatttctttttgt 46737446  T
Q  503 gggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    | ||||||||||||||   |||||||||||||||| ||||    
T  46737445 gtgttccttaaacaatgtccttaagacacttgttagcaag 46737406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 429 - 542
Target Start/End: Complemental strand, 42183486 - 42183371
Alignment:
Q  429 ttttgtattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaa 526  Q
    ||||| ||| |||||| ||||||||||||||||||| ||||  ||||| |||||||||||||||||||| |||| ||  |||| |||| ||| | ||||     
T  42183486 ttttgcattagaaattatacggttatgactttaacaagtatttgacttttattttcaaaacataatttccttttgtgaattccataaataatgcccttag 42183387  T
Q  527 gacacttgttaacaag 542  Q
    | ||||||||||||||    
T  42183386 ggcacttgttaacaag 42183371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 404 - 541
Target Start/End: Complemental strand, 43595092 - 43594954
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatg--tatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || |||||||||| ||||||||||||||| |||| || | |  | | ||||| |||||||| ||||||||||||||||    
T  43595092 tgtttaagcatctaaaagtagcaacttttgtattgaaaattgtacggttataacttcaagaagggtttaacttacattttcaagacataatttcttttta 43594993  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaa 541  Q
    ||||||  ||||||||| |||||| | || ||||||||||    
T  43594992 tgggtt-tttaaacaatgctcttagggcatttgttaacaa 43594954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 29235599 - 29235667
Alignment:
Q  469 tgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgtta 537  Q
    |||||| ||||||||| ||| ||||||||||| ||||||||||| | ||| |||||| |||||||||||    
T  29235599 tgacttctattttcaagacaaaatttctttttgtgggttccttagataatgctcttaggacacttgtta 29235667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 518
Target Start/End: Complemental strand, 56040412 - 56040333
Alignment:
Q  439 gaaattgtacggttatgactttaac--atgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaat 518  Q
    |||||||||| ||||||||||||||  |||| ||||||||||||| || | ||||||  || ||||||||||||||||||||    
T  56040412 gaaattgtaccgttatgactttaacaaatgtttgacttatatttttaagatataatt--ttcttatgggttccttaaacaat 56040333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 534
Target Start/End: Complemental strand, 31309082 - 31309045
Alignment:
Q  497 ttttatgggttccttaaacaatactcttaagacacttg 534  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  31309082 ttttatgagttccttaaacaatactcttaagacacttg 31309045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 404 - 542
Target Start/End: Original strand, 45249363 - 45249503
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||| ||||||||||||||||||||||||||||||  ||| |||||| ||||||||| |||||||||||||||     
T  45249363 tgtttaagcatataaaagtagcaacttttgcattggaaattgtacggttatgactttaacaaatgtttgacttgtattttcaagacataatttctttttg 45249462  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||| | |||| | ||||||||||||||    
T  45249463 tgggttccttaaacaatgcccttagggcacttgttaacaag 45249503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 469 - 542
Target Start/End: Original strand, 31580364 - 31580437
Alignment:
Q  469 tgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  31580364 tgacttatattttcaaaacataatttttttttgtgggttctttaaacaatacccttaagacacttgttaacaag 31580437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 404 - 518
Target Start/End: Complemental strand, 8108325 - 8108210
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtat-gacttatattttcaaaacataatttctttttat 502  Q
    ||||||||||| ||||| ||| || ||||| |||||||||||||||||||| |||| |||| || | |||||||||||||||  |||||||||||||| |    
T  8108325 tgtttaagcatctaaaagtaacaacttttgcattggaaattgtacggttataacttcaacaagtgttgacttatattttcaaggcataatttcttttttt 8108226  T
Q  503 gggttccttaaacaat 518  Q
    | ||||||||||||||    
T  8108225 gtgttccttaaacaat 8108210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 404 - 517
Target Start/End: Complemental strand, 23919256 - 23919141
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||  |||| |||| ||||  ||| |||| ||||||||| | ||||||||||||||||    
T  23919256 tgtttaagcctctaaaagtaacaacttttgtattggaaattgtacaattataacttcaacaagtgtttgacatatattttcgagacataatttcttttta 23919157  T
Q  502 tgggttccttaaacaa 517  Q
    ||||||||||||||||    
T  23919156 tgggttccttaaacaa 23919141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 514
Target Start/End: Original strand, 52525490 - 52525555
Alignment:
Q  451 ttatgactttaacatgtat--gacttatattttcaaaacataatttctttttatgggttccttaaa 514  Q
    |||||||||| ||||||||  |||||||||||| |||||| |||||||||||||||||||||||||    
T  52525490 ttatgacttttacatgtatttgacttatatttttaaaacaaaatttctttttatgggttccttaaa 52525555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 53466232 - 53466368
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    |||||||| || |||||  || || ||||| |||| |||||||||| |||| |||| || |  ||| ||||||||||||| ||| |||||||||||||||    
T  53466232 tgtttaagtatctaaaagaaacaacttttgcattgaaaattgtacgattataacttcaataagtgtttgacttatatttttaaagcataatttcttttta 53466331  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaac 539  Q
    | ||||||||||||||| |  ||||| |||||||||||    
T  53466332 taggttccttaaacaatgccattaag-cacttgttaac 53466368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 48993476 - 48993337
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatg--tatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||  ||||||||||||||| || ||||||||||| |  | |||||| ||||||||| |||||||||| | ||     
T  48993476 tgtttaagcatctaaaagtagcaactttttcattggaaattgtacg-ttgtgactttaacaagggtttgacttttattttcaagacataatttcctcttg 48993378  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||| | |||| | ||||||||| ||||    
T  48993377 tgggttccttaaacaatgcccttagggcacttgttagcaag 48993337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 542
Target Start/End: Original strand, 27213970 - 27214079
Alignment:
Q  435 attggaaattgtacggttatgactttaacat--gtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacact 532  Q
    |||||||||||||  ||||||||||| ||||  || |||||| |||||| || ||| | ||||||||| || ||||||||||||||   ||||  |||||    
T  27213970 attggaaattgtatagttatgacttttacatatgtttgacttgtatttttaagacaaagtttctttttgtgtgttccttaaacaatgtccttagaacact 27214069  T
Q  533 tgttaacaag 542  Q
    ||||||||||    
T  27214070 tgttaacaag 27214079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 519
Target Start/End: Complemental strand, 39611742 - 39611626
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaac--atgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||||| ||| ||  |||||||| | || ||||||||| ||||||||||||||  |||| ||| || |||||||||  | |||||| ||||||    
T  39611742 tgtttaagcattttaaagtagcaatttttgcactgaaaattgtacagttatgactttaacatatgtttgatttgtattttcaatgcgtaattt-ttttta 39611644  T
Q  502 tgggttccttaaacaata 519  Q
    || ||| |||||||||||    
T  39611643 tgagtttcttaaacaata 39611626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 518
Target Start/End: Complemental strand, 6488903 - 6488787
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||||||||| ||  || ||||| |||| |||||||||  ||||||||||||||  |||   |||| |||||| || | ||||| |||||||     
T  6488903 tgtttaagcatttaaaagtagcaacttttgcattgaaaattgtactattatgactttaacaagtgttgtacttgtatttttaagatataatctctttttg 6488804  T
Q  502 tgggttccttaaacaat 518  Q
    | |||||||||||||||    
T  6488803 taggttccttaaacaat 6488787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 38402651 - 38402511
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    |||||| |||| ||||| ||  || |||||||||||||||||||||||||||||||||| |  ||| | |||| ||||||||||||||||||||||||||    
T  38402651 tgtttaggcatctaaaagtagcaacttttgtattggaaattgtacggttatgactttaagaagtgtttaacttgtattttcaaaacataatttcttttta 38402552  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||| ||||||||||||| | |||| ||||||||||| ||||    
T  38402551 tggattccttaaacaatgcccttatgacacttgttagcaag 38402511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 39791646 - 39791506
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  ||||||| |||| ||||||||||| | ||||||||||||  ||| |||||| |||||||||||||||||||||||||     
T  39791646 tgtttaagcatataaaagtagcaatttttatattagaaattgtacgataatgactttaacaaatgtttgacttgtattttcaaaacataatttctttttg 39791547  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||| ||| ||||||||||| |||| ||||||||||||||||    
T  39791546 tggattctttaaacaatacccttaggacacttgttaacaag 39791506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 406 - 542
Target Start/End: Complemental strand, 19955190 - 19955052
Alignment:
Q  406 tttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttctttttatg 503  Q
    ||||||||| ||||| ||  || |||| ||||||||||| || | ||||||||||||||  ||| ||| || ||||||||||||||||||||||||| ||    
T  19955190 tttaagcatataaaagtagcaacttttttattggaaattatatgattatgactttaacaagtgtttgatttgtattttcaaaacataatttctttttgtg 19955091  T
Q  504 ggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  19955090 ggttccttaaacaatgctcttaaggcacttgttaacaag 19955052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 36904076 - 36903936
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||| |||||||||||||||||||||||||||| |  ||| |||||| ||||||||| |||||||||||||||     
T  36904076 tgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttatgactttaataagtgtttgacttgtattttcaagacataatttctttttg 36903977  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||| | |||| | ||||||||| ||||    
T  36903976 tgggttccttaaacaatgcccttagggcacttgttagcaag 36903936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 542
Target Start/End: Original strand, 223894 - 224034
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  |||||||| |||| ||||||||||||||| |||| || |  ||| ||||||||||||||||   ||||||||||||||    
T  223894 tgtttaagcatctaaaagtagcaatttttgcattgaaaattgtacggttataacttcaataagtgtttgacttatattttcaaggtataatttcttttta 223993  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    || |||||||||||||| |  ||| | ||||||||||||||    
T  223994 tgagttccttaaacaatgcatttagggcacttgttaacaag 224034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 6563191 - 6563053
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| |||   ||||||||||| ||||||| ||||||| | || || |  ||| ||| ||||||||| |||| ||||||| ||||||    
T  6563191 tgtttaagcatataaaagtaac--tttttgtattgtaaattgtgcggttataatttcaataagtgtttgatttatatttttaaaatataattttttttta 6563094  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||||  ||||||||| |||||||||||    
T  6563093 tgggttccttaaacaatatccttaagacatttgttaacaag 6563053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 9559764 - 9559624
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    |||||||||||| ||||||| ||| ||||  ||||||||||||   ||||| | ||| |||  ||| |||||| ||||||||||||| ||||| |||||     
T  9559764 tgtttaagcattcaaaaatattaacttttacattggaaattgtgtagttataatttttacacgtgtttgacttgtattttcaaaacaaaatttatttttg 9559665  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    || || ||||||||||||| |||||||||||||||| ||||    
T  9559664 tgagtaccttaaacaatacccttaagacacttgttatcaag 9559624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 405 - 521
Target Start/End: Complemental strand, 41283450 - 41283333
Alignment:
Q  405 gtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgacttta-acatgtatgacttatattttcaaaacataatttctttttatg 503  Q
    |||||| ||| ||||| || ||| |||||||||| ||||||||||||||| |||| | | || | ||||||||||||||||   ||||||||||||||||    
T  41283450 gtttaaacatctaaaagtattaacttttgtattgaaaattgtacggttataacttaacaaatatttgacttatattttcaaggtataatttctttttatg 41283351  T
Q  504 ggttccttaaacaatact 521  Q
     |||||||||||||||||    
T  41283350 agttccttaaacaatact 41283333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 404 - 500
Target Start/End: Original strand, 9047603 - 9047701
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttt 500  Q
    ||||||| ||| ||||| ||| || ||||  |||| |||||||||||||||||||||||||  ||| |||||| |||||||||||||||||||||||||    
T  9047603 tgtttaatcatataaaagtaacaacttttacattgaaaattgtacggttatgactttaacaagtgtttgacttgtattttcaaaacataatttcttttt 9047701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 406 - 542
Target Start/End: Complemental strand, 13490953 - 13490815
Alignment:
Q  406 tttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttctttttatg 503  Q
    |||||||||| ||||||| |||||||| ||||| ||||||||  ||||||| ||| |||||| |  | ||||||||||||| ||| ||||| ||||| ||    
T  13490953 tttaagcattcaaaaatagtaatttttatattgaaaattgtatagttatgatttttacatgtgtttgccttatattttcaagacaaaatttatttttgtg 13490854  T
Q  504 ggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||| ||||||||| || ||| | ||||||||| ||||    
T  13490853 ggttctttaaacaatgcttttagggcacttgttagcaag 13490815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 404 - 518
Target Start/End: Complemental strand, 15335948 - 15335832
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaac--atgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  |||||||| ||| ||||||||||  |||||||||||||  |||| |||||| ||||||||| ||| || |||| |||     
T  15335948 tgtttaagcatctaaaagtagcaatttttgcatttgaaattgtacaattatgactttaacatatgtttgacttgtattttcaagacaaaaattctctttg 15335849  T
Q  502 tgggttccttaaacaat 518  Q
    |||||||||||||||||    
T  15335848 tgggttccttaaacaat 15335832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 517
Target Start/End: Complemental strand, 4428862 - 4428778
Alignment:
Q  435 attggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttctttttatgggttccttaaacaa 517  Q
    |||| ||||| ||||||||||||||||| |  |||  ||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  4428862 attgaaaattatacggttatgactttaataaatatttgacttatatcttcaagacataatttctttttatggattccttaaacaa 4428778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 537
Target Start/End: Original strand, 16471198 - 16471264
Alignment:
Q  471 acttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgtta 537  Q
    |||| ||||||||| | | ||||||||||| |||||||||||||||||  ||||| |||||||||||    
T  16471198 acttgtattttcaacataaaatttctttttgtgggttccttaaacaatgttcttatgacacttgtta 16471264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 464 - 533
Target Start/End: Original strand, 14812340 - 14812409
Alignment:
Q  464 atgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacactt 533  Q
    |||| |||||| ||||||||| | | ||||||||||| | | |||||||||||||||||||| |||||||    
T  14812340 atgtttgacttgtattttcaagataaaatttctttttgttgtttccttaaacaatactcttatgacactt 14812409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 542
Target Start/End: Original strand, 7271118 - 7271188
Alignment:
Q  471 acttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    |||| ||||||||||| | ||||||||||| | | |||| ||||||||| |||||| |||||||||||||||    
T  7271118 acttgtattttcaaaataaaatttctttttttag-ttccctaaacaatattcttaaaacacttgttaacaag 7271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 464 - 542
Target Start/End: Original strand, 13530609 - 13530687
Alignment:
Q  464 atgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    |||| |||||| ||||||||| ||| | ||| ||||| ||| |||||| ||||||   |||||||||||||||||||||    
T  13530609 atgtttgacttgtattttcaagacaaactttttttttgtggattcctttaacaatgtccttaagacacttgttaacaag 13530687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 542
Target Start/End: Complemental strand, 248134 - 248089
Alignment:
Q  497 ttttatgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||| |||||||||| | |||||||||||||||| ||||    
T  248134 ttttatgggttgcttaaacaatgcccttaagacacttgttagcaag 248089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 537
Target Start/End: Complemental strand, 879523 - 879450
Alignment:
Q  464 atgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgtta 537  Q
    |||| |||||||| ||||||||| |  |||||| ||||||| || |||||||||| | |||| |||||||||||    
T  879523 atgtttgacttatgttttcaaaagaatatttctatttatggtttgcttaaacaatgcccttaggacacttgtta 879450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 8e-29; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 38573405 - 38573265
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    |||||||| || ||||| || ||| ||||| |||||||||||||||||||| |||| ||||  ||| ||||||||||||||||  |||||||||||||||    
T  38573405 tgtttaagtatctaaaagtagtaacttttgcattggaaattgtacggttataacttcaacaaatgtttgacttatattttcaaggcataatttcttttta 38573306  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    |||||||||||||||||  |||||   ||||||||||||||    
T  38573305 tgggttccttaaacaatgttcttagagcacttgttaacaag 38573265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 13018602 - 13018462
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||| |||||||||||||||  |||||||||||||  ||| |||||||||||||||| | ||| |||  |||||    
T  13018602 tgtttaagcatataaaagtagcaacttttgcattggaaattgtacgaatatgactttaacaaatgtttgacttatattttcaagatatatttttctttta 13018503  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||| | |||| ||||||||||||||||    
T  13018502 tgggttccttaaacaatgcccttaggacacttgttaacaag 13018462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 404 - 511
Target Start/End: Complemental strand, 7642713 - 7642604
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||| ||| ||||| ||  || ||||| |||| ||||||||||||||| |||| ||||  ||| |||||||||||||||||||||||||||||||||    
T  7642713 tgtttaaacatctaaaattagcaacttttgcattgtaaattgtacggttataacttcaacaagtgtttgacttatattttcaaaacataatttcttttta 7642614  T
Q  502 tgggttcctt 511  Q
    | ||||||||    
T  7642613 taggttcctt 7642604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 448 - 542
Target Start/End: Original strand, 24999436 - 24999532
Alignment:
Q  448 cggttatgactttaaca--tgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    |||||||||||||||||  ||| |||||| ||||||||| ||||||||||||||| |||||||||| |||||| | |||| | ||||||||||||||    
T  24999436 cggttatgactttaacaagtgtttgacttgtattttcaagacataatttctttttgtgggttcctttaacaatgcccttagggcacttgttaacaag 24999532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 469 - 542
Target Start/End: Original strand, 12763330 - 12763403
Alignment:
Q  469 tgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||| |  ||| |||| |||||||||||    
T  12763330 tgacttatattttcaaagcatactttctttttatgggttccttaaacaatgcctttaggacatttgttaacaag 12763403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 404 - 518
Target Start/End: Complemental strand, 23518313 - 23518197
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgacttta--acatgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| |||||||| ||| ||||| |||| |||||||||||||  |||||||  | || | ||| ||||||||| || | |||||||||||||     
T  23518313 tgtttaagcatctaaaaatagtaacttttgcattgaaaattgtacggttcagactttaataaatatttgatttatatttttaagatataatttctttttg 23518214  T
Q  502 tgggttccttaaacaat 518  Q
    |||||||||||||||||    
T  23518213 tgggttccttaaacaat 23518197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 404 - 542
Target Start/End: Original strand, 36642703 - 36642843
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||| || ||||  ||||||| ||||||| ||||||||||| ||  ||| |||||| ||||||||| |||||||||| ||||     
T  36642703 tgtttaagcatctaaaagtaacaacttttacattggaatttgtacgattatgactttatcaaatgtttgacttgtattttcaagacataatttccttttg 36642802  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    | | | ||||||||||| ||||||  |||||| ||||||||    
T  36642803 tagataccttaaacaatgctcttagaacacttattaacaag 36642843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 404 - 533
Target Start/End: Complemental strand, 12978359 - 12978228
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    |||||||| || ||||| ||  ||||||||  ||||||||||||||||  |||||||||||  ||| ||| || ||||||||| ||||||||||||||||    
T  12978359 tgtttaagaatataaaagtagcaatttttgccttggaaattgtacggtcgtgactttaacaagtgtttgatttgtattttcaagacataatttcttttta 12978260  T
Q  502 tgggttccttaaacaatactcttaagacactt 533  Q
    || ||| |||||| ||  |||||| |||||||    
T  12978259 tgagtttcttaaataacgctcttaggacactt 12978228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 488 - 542
Target Start/End: Complemental strand, 44395689 - 44395635
Alignment:
Q  488 ataatttctttttatgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  44395689 ataatttctttttatgggttccttaaacaatgcccttatgacacttgttaacaag 44395635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 542
Target Start/End: Original strand, 11611574 - 11611638
Alignment:
Q  478 ttttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    |||||||| |||||| |||||||||||||||||||||||||   |||| ||||||||||||||||    
T  11611574 ttttcaaagcataatatctttttatgggttccttaaacaatgtccttaggacacttgttaacaag 11611638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 542
Target Start/End: Original strand, 515144 - 515261
Alignment:
Q  425 taatttttgtattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttctttttatgggttccttaaacaatactc 522  Q
    ||||||||  ||||||||||||   ||||||||||| |||| |||  ||||| ||||||||| |||   |||| |||||||||||||||||||||||| |    
T  515144 taatttttaaattggaaattgtgtagttatgacttttacatatatttgacttgtattttcaagacag--tttccttttatgggttccttaaacaataccc 515241  T
Q  523 ttaagacacttgttaacaag 542  Q
    ||| || |||||||| ||||    
T  515242 ttacgatacttgttagcaag 515261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 542
Target Start/End: Original strand, 13177758 - 13177898
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttcttttta 501  Q
    |||||||||||| |||| || ||| |||| ||||||||||| |   ||||||||||| |||||| |  ||||| ||||||||| ||| | |||||||||     
T  13177758 tgtttaagcattcaaaagtagtaacttttatattggaaattatgtagttatgacttttacatgtgtttgacttgtattttcaagacaaactttctttttg 13177857  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
      | ||||||||||||| | |||| ||||||||||| ||||    
T  13177858 aagattccttaaacaatgcccttaggacacttgttagcaag 13177898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 1090091 - 1090008
Alignment:
Q  450 gttatgactttaacatgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacactt 533  Q
    ||||||||||| |  ||| |||||| ||||||||| ||| |||| |||||| ||||||||||||||||| | ||||| ||||||    
T  1090091 gttatgacttttatgtgtttgacttgtattttcaagacaaaattcctttttgtgggttccttaaacaatgcccttaaaacactt 1090008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 518
Target Start/End: Original strand, 1769147 - 1769260
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtatgacttatattttcaaaacataatttctttttatg 503  Q
    ||||||||||| ||||| |||||| ||||  |||| |||||||   ||||||| ||| | |||| |||| | ||||||||| | | ||||||| ||||||    
T  1769147 tgtttaagcatctaaaactaataacttttacattgaaaattgtgaagttatgattttgatatgtttgacctctattttcaagata-aatttctatttatg 1769245  T
Q  504 ggttccttaaacaat 518  Q
    |||| ||||||||||    
T  1769246 ggttacttaaacaat 1769260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 519
Target Start/End: Complemental strand, 42446671 - 42446554
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtatg--acttatattttcaaaacataatttcttttta 501  Q
    ||||||| |||  ||||||  |||||||| ||||| |||||||   ||||| ||||| |||| |||   ||||||||||| |||||| |||||||||||     
T  42446671 tgtttaaacatccaaaaattgtaatttttatattgaaaattgtgtagttataacttttacatatatttaacttatatttttaaaacaaaatttctttttg 42446572  T
Q  502 tgggttccttaaacaata 519  Q
    | ||||| ||||||||||    
T  42446571 taggttctttaaacaata 42446554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 518
Target Start/End: Original strand, 45079361 - 45079403
Alignment:
Q  476 tattttcaaaacataatttctttttatgggttccttaaacaat 518  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||    
T  45079361 tattttcaagacataatgtctttttgtgggttccttaaacaat 45079403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 537
Target Start/End: Complemental strand, 10328721 - 10328648
Alignment:
Q  464 atgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgtta 537  Q
    |||| ||||||||||||  || ||| ||||||||||||| | || ||||||||| || |||| |||||||||||    
T  10328721 atgtttgacttatatttgtaagacaaaatttctttttatagatttcttaaacaacacccttacgacacttgtta 10328648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 404 - 537
Target Start/End: Original strand, 3831385 - 3831519
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  |||||||| |||||||||||||| |||||||||||||||||| |   | || ||||||||| ||||||||| ||||||    
T  3831385 tgtttaagcatctaaaagtagaaatttttgcattggaaattgtacagttatgactttaacatgtgttgaatttgtattttcaagacataattt-ttttta 3831483  T
Q  502 tgggttccttaaacaatactcttaagacacttgtta 537  Q
    ||||||| ||||||||| | ||||||||||||||||    
T  3831484 tgggttctttaaacaatgcccttaagacacttgtta 3831519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 404 - 542
Target Start/End: Original strand, 34038801 - 34038938
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtatgacttatattttcaaaacataatttctttttatg 503  Q
    ||||||||||| ||||| || ||| ||||| | |||||||||||||||||| | ||||| |||| ||||||||||||||||  |||||||||||||||||    
T  34038801 tgtttaagcatctaaaagtagtaacttttgcaatggaaattgtacggttataagtttaa-atgtttgacttatattttcaatgcataatttctttttatg 34038899  T
Q  504 ggttccttaaacaatactcttaagacacttgttaacaag 542  Q
      || |||||||||||| |||| | ||||||||| ||||    
T  34038900 aatttcttaaacaatacccttatgtcacttgttatcaag 34038938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 894893 - 894753
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || |||||| ||| |||||||||| ||||||||||||||  ||| |||||| || |||||| |||||||||| ||||     
T  894893 tgtttaagcatctaaaagtagcaacttttgtgttgaaaattgtacgattatgactttaacaagtgtttgacttgtactttcaagacataatttccttttg 894794  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||| | |||| | ||||||||| ||||    
T  894793 tgggttccttaaacaatgcccttagggcacttgttagcaag 894753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 518
Target Start/End: Original strand, 5892669 - 5892785
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    |||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||| |  ||| |||||| |||||| || | |||||||||||||     
T  5892669 tgtttaagcatttaaaaatagtaacttttggattggaaattatacggttatgactttaataagtgtttgacttgtatttttaagatataatttctttttg 5892768  T
Q  502 tgggttccttaaacaat 518  Q
    |   |||||||||||||    
T  5892769 tatattccttaaacaat 5892785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 404 - 539
Target Start/End: Complemental strand, 36563965 - 36563830
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||||||||| ||  || ||||  |||| ||||||||||| ||| |||||||||  ||| ||||||||||||||||  |||||||||||||      
T  36563965 tgtttaagcatttaaaagtagcaacttttacattgaaaattgtacggatataactttaacaagtgtttgacttatattttcaaggcataatttctttt-- 36563868  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaac 539  Q
    || ||||||||||||||   |||| |||||||||||||    
T  36563867 tgagttccttaaacaatgtccttaggacacttgttaac 36563830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 404 - 516
Target Start/End: Original strand, 38067715 - 38067829
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaac--atgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| || ||| |||||||||| |||||||||| | |||||||||||  |||| |||||| |||||||||  ||||||||||||||     
T  38067715 tgtttaagcatctaaaagtattaacttttgtattgaaaattgtacgatgatgactttaacaaatgtttgacttgtattttcaaggcataatttctttttg 38067814  T
Q  502 tgggttccttaaaca 516  Q
    ||| || ||||||||    
T  38067815 tggatttcttaaaca 38067829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 404 - 518
Target Start/End: Complemental strand, 32213625 - 32213511
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtatgacttatattttcaaaacataatttctttttatg 503  Q
    ||||||||||||||||| || ||||||||| |||| ||||||||   |||||| |||     || ||||||||||||| || ||||||||||||||||||    
T  32213625 tgtttaagcatttaaaagtagtaatttttgcattgaaaattgtataattatgattttcgtgcgtttgacttatatttttaagacataatttctttttatg 32213526  T
Q  504 ggttccttaaacaat 518  Q
    |||| ||||||||||    
T  32213525 ggtttcttaaacaat 32213511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 42410199 - 42410336
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||| ||| ||||| ||  || ||||| |||||||||| || |||  |||| ||||||  ||| |||||| ||||||||| |||||||||||||||     
T  42410199 tgtttaatcatctaaaagtagcaacttttgcattggaaattatatggtattgaccttaacaagtgtttgacttgtattttcaagacataatttctttttg 42410298  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaac 539  Q
    ||||||||||||||||| | |||| | |||||||||||    
T  42410299 tgggttccttaaacaatgcccttagggcacttgttaac 42410336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 498
Target Start/End: Original strand, 1795826 - 1795922
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttt 498  Q
    |||||||| |||||||||||| || ||||   ||| ||||||||||||||||||||||| |  ||| |||||| ||||||||| || ||||||||||    
T  1795826 tgtttaaggatttaaaaataacaacttttaccttgaaaattgtacggttatgactttaagatgtgtttgacttgtattttcaagacttaatttcttt 1795922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 500
Target Start/End: Complemental strand, 10040515 - 10040419
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtatgacttatattttcaaaacataatttcttttt 500  Q
    ||||||||||| ||||| || ||| ||||| |||||||||||| ||||||| |||| ||||  | | |||||||||||||| || |||||| |||||    
T  10040515 tgtttaagcatctaaaagtagtaacttttgcattggaaattgtccggttataacttcaacaaatgttacttatattttcaagacgtaattttttttt 10040419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 434 - 518
Target Start/End: Complemental strand, 11818245 - 11818159
Alignment:
Q  434 tattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttctttttatgggttccttaaacaat 518  Q
    ||||| ||||||||  ||||||||||| |||||| |  ||||| ||||||||| |||  |||||||||||||||||| |||||||||    
T  11818245 tattgaaaattgtatagttatgacttttacatgtttttgacttgtattttcaagacaagatttctttttatgggttctttaaacaat 11818159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 435 - 519
Target Start/End: Original strand, 13984278 - 13984364
Alignment:
Q  435 attggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaata 519  Q
    ||||||||| |||||||||| |||| || |  ||| ||||||||||||| ||| ||||||||||||||| || || |||||||||||    
T  13984278 attggaaatcgtacggttataacttcaataaatgtttgacttatatttttaaagcataatttctttttacggattacttaaacaata 13984364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 464 - 539
Target Start/End: Original strand, 35365591 - 35365666
Alignment:
Q  464 atgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgttaac 539  Q
    |||| |||||||||||||||| | |||||||||| |||||| || ||||||||||  ||||| | |||||||||||    
T  35365591 atgtttgacttatattttcaagatataatttcttattatggatttcttaaacaattttcttagggcacttgttaac 35365666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 525
Target Start/End: Original strand, 3527750 - 3527811
Alignment:
Q  464 atgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactctta 525  Q
    |||| |||||| ||||| || |||| ||||||||||| ||| ||||||||||||| ||||||    
T  3527750 atgtttgacttgtatttccataacaaaatttctttttgtggattccttaaacaatgctctta 3527811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 542
Target Start/End: Complemental strand, 4552166 - 4552130
Alignment:
Q  506 ttccttaaacaatactcttaagacacttgttaacaag 542  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  4552166 ttccttaaacaatactcttaagacacatgttagcaag 4552130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 537
Target Start/End: Complemental strand, 51049934 - 51049799
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||| |  ||| ||| |||| ||||||||||||||  ||| | |||| ||||||||| |||||||||  ||||     
T  51049934 tgtttaagcatataaaagtagcaacttttgcaccggagattatacgattatgactttaacaagtgtttaacttgtattttcaagacataattttcttttc 51049835  T
Q  502 tgggttccttaaacaatactcttaagacacttgtta 537  Q
    |   ||||||||||||||| ||||  ||||||||||    
T  51049834 taaattccttaaacaatacccttagaacacttgtta 51049799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 429 - 542
Target Start/End: Original strand, 32292246 - 32292361
Alignment:
Q  429 ttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaa 526  Q
    ||||||| || |||||||| | |||| |||||||||  ||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||     
T  32292246 ttttgtaatgaaaattgtaggtttataactttaacaaatgtttgacttatattttcaaaacgtaatttatttttataggttccttaaacaatacccttag 32292345  T
Q  527 gacacttgttaacaag 542  Q
    ||||||||||| ||||    
T  32292346 gacacttgttagcaag 32292361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 15477001 - 15476861
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  ||||||| ||||| ||||||||||  |||||||||||||  ||| |||||||||||||||| ||||| || | |||||    
T  15477001 tgtttaagcatataaaagtagcaatttttttattgaaaattgtacgagtatgactttaacaagtgtttgacttatattttcaagacatatttccctttta 15476902  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    || ||||||||||||||   |||| || |||||||||||||    
T  15476901 tgcgttccttaaacaatgtccttaggatacttgttaacaag 15476861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 25713465 - 25713326
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||| || ||||| ||||||| ||||||| |||||||||||||||||||  |  |||||||||||| | |||||||||||||     
T  25713465 tgtttaagcatctaaaa-taacaacttttgcattggaacttgtacgattatgactttaacatgtatttgctttatattttcaagagataatttctttttg 25713367  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    || |||||||||||||| | |||||  ||||||||| ||||    
T  25713366 tgagttccttaaacaatgcacttaaagcacttgttagcaag 25713326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 542
Target Start/End: Complemental strand, 34339019 - 34338879
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||||||  || ||||| |||||||| |||  |||||| |||| ||||  ||| ||||||||||||||||  |||||||||||||||    
T  34339019 tgtttaagcatctaaaaatagcaacttttgcattggaaagtgtgtggttataacttcaacaagtgtttgacttatattttcaaggcataatttcttttta 34338920  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||| |||||||||   |||| | ||||||||||||||    
T  34338919 tgggttctttaaacaatgtccttagggcacttgttaacaag 34338879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 404 - 541
Target Start/End: Complemental strand, 8713892 - 8713754
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactt-taacatgtatgacttatattttcaaaacataatttctttttat 502  Q
    ||||||||||||||||| ||| || ||||||||| |||||||| | ||||||||||  || |||| |||||| ||||||||| ||| ||||| |||| ||    
T  8713892 tgtttaagcatttaaaagtaacaacttttgtattagaaattgtgcagttatgacttaaaatatgtttgacttgtattttcaagacaaaattttttttaat 8713793  T
Q  503 gggttccttaaacaatactcttaagacacttgttaacaa 541  Q
    || || |||||||||||  |||| |||| | ||||||||    
T  8713792 ggatttcttaaacaatatccttaggacagtggttaacaa 8713754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 437 - 518
Target Start/End: Complemental strand, 36487294 - 36487211
Alignment:
Q  437 tggaaattgtacggttatgactttaacat--gtatgacttatattttcaaaacataatttctttttatgggttccttaaacaat 518  Q
    |||||| ||||| ||||||||||||||||  || ||| || ||||||||| ||||||||||||||| |||||||||||||||||    
T  36487294 tggaaagtgtacagttatgactttaacatatgtttgatttgtattttcaatacataatttctttttgtgggttccttaaacaat 36487211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 406 - 542
Target Start/End: Original strand, 26362253 - 26362391
Alignment:
Q  406 tttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttctttttatg 503  Q
    ||||||||| ||||| ||  |||||||||||| |||||||||||  ||||| |||||||  ||| | | |||||||||||| ||||  |||  |||| ||    
T  26362253 tttaagcatataaaagtagcaatttttgtattagaaattgtacgagtatgattttaacaagtgtttaatttatattttcaatacatgtttttcttttgtg 26362352  T
Q  504 ggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||  |||| | ||||||||||||||    
T  26362353 ggttccttaaacaatatccttagggcacttgttaacaag 26362391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 542
Target Start/End: Original strand, 10285333 - 10285398
Alignment:
Q  476 tattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | |||| | ||||||||||||||    
T  10285333 tattttcaaaacataatttctttttat-ggttccttaaacaatgcccttagggcacttgttaacaag 10285398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 464 - 542
Target Start/End: Complemental strand, 31006385 - 31006305
Alignment:
Q  464 atgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactctt--aagacacttgttaacaag 542  Q
    |||| |||||||||||||||| |||| |||||||||||||||||| ||||| ||| || ||  ||||||||||||||||||    
T  31006385 atgtttgacttatattttcaagacatgatttctttttatgggttctttaaataatgcttttaaaagacacttgttaacaag 31006305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 404 - 541
Target Start/End: Original strand, 29045335 - 29045474
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||| ||| ||||| || ||||||||| |||  ||||| ||  |||||||||||||||  ||| ||| ||||||||| || | |||||||||||||     
T  29045335 tgtttaaccatctaaaagtagtaatttttgcattaaaaattatatagttatgactttaacaagtgtttgatttatatttttaatatataatttctttttg 29045434  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaa 541  Q
    ||||||||||||| |||| | |||  ||| ||||||||||    
T  29045435 tgggttccttaaataatatttttataacaattgttaacaa 29045474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 476 - 542
Target Start/End: Original strand, 1056557 - 1056623
Alignment:
Q  476 tattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    |||||||||  || |||||||||||||| ||| |||||||||| |||||||||||||||||| ||||    
T  1056557 tattttcaaggcaaaatttctttttatgagtttcttaaacaatgctcttaagacacttgttagcaag 1056623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 518
Target Start/End: Original strand, 1088214 - 1088330
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacat--gtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || | || |||| ||||||||||| |||||| ||||| ||  || | ||||||||||| || | |||||||||||||     
T  1088214 tgtttaagcatctaaaagtagcaactcttatattagaaattgtacgattatgattttaatatatgtttaacttatatttttaagatataatttctttttg 1088313  T
Q  502 tgggttccttaaacaat 518  Q
    |||||||||||||||||    
T  1088314 tgggttccttaaacaat 1088330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 464
Target Start/End: Original strand, 10284984 - 10285044
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca 464  Q
    ||||||||||| ||||| || ||| |||||||||||||||||||||||||| |||| ||||    
T  10284984 tgtttaagcatctaaaagtagtaacttttgtattggaaattgtacggttataacttcaaca 10285044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 518
Target Start/End: Original strand, 606685 - 606801
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||||||  |||||||  ||||||||||||||  |||| ||||||| |  |||  || |||||||||  | | ||||||||||||||    
T  606685 tgtttaagcatctaaaaatagcaatttttacattggaaattgtacctttattactttaataaatatttgatttatatttttgagatataatttcttttta 606784  T
Q  502 tgggttccttaaacaat 518  Q
    ||  |||||||||||||    
T  606785 tgaattccttaaacaat 606801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 469 - 542
Target Start/End: Original strand, 37447304 - 37447377
Alignment:
Q  469 tgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    |||||||||||||||| ||| | ||||||||| | |||||||||||||||  ||||| | ||||||||| ||||    
T  37447304 tgacttatattttcaagacaaagtttctttttgtaggttccttaaacaatgttcttagggcacttgttagcaag 37447377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 531
Target Start/End: Complemental strand, 14663056 - 14662965
Alignment:
Q  442 attgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacac 531  Q
    ||||| ||||||| |||| ||||  ||| ||||||||||||| ||  |||||||| |||||||| |||||||||||||| | ||||| ||||    
T  14663056 attgtgcggttataacttcaacaagtgtttgacttatatttttaatgcataatttttttttatgagttccttaaacaatgcacttaaaacac 14662965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 16054441 - 16054509
Alignment:
Q  469 tgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgtta 537  Q
    |||||| |||||| |||||| ||||||||||| |||||| ||||||||||   |||| |||||||||||    
T  16054441 tgacttgtattttaaaaacaaaatttctttttgtgggtttcttaaacaatgtccttaggacacttgtta 16054509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 542
Target Start/End: Original strand, 32147872 - 32148012
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaacatgtat--gacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| || ||||||||| |||| ||||||||||||||||||||||| |  |||  || || |||||||||||||||||||||||||     
T  32147872 tgtttaagcatataaaagtagtaatttttgcattgcaaattgtacggttatgactttaataaatatttgatttgtattttcaaaacataatttctttttg 32147971  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||| ||| ||||||||  |  | | ||||||||||||||||    
T  32147972 tggattctttaaacaaagccatcaggacacttgttaacaag 32148012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 542
Target Start/End: Original strand, 6100667 - 6100807
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||||| |||| ||||| || |||||||||||||| |  ||| |||| | ||||||||| |||||||||| ||||     
T  6100667 tgtttaagcatataaaagtagcaacttttgcattgaaaattatagggttatgactttaagaagtgtttgacatgtattttcaagacataatttccttttg 6100766  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    ||||||||||||||||| | |||| | ||||||||||||||    
T  6100767 tgggttccttaaacaatgcccttagggcacttgttaacaag 6100807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 404 - 542
Target Start/End: Original strand, 33134191 - 33134332
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgac-ttatattttcaaaacataatttcttttt 500  Q
    ||||||| ||| ||||| ||  |||||||| ||| |||||||||| ||||| |||| ||||  ||| |||| |||||||||  |  |||||||| |||||    
T  33134191 tgtttaaacatctaaaagtataaatttttgcattagaaattgtacagttataacttcaacaaatgtttgaccttatatttttgaggcataattttttttt 33134290  T
Q  501 atgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    |||||||||||||||||| |  ||||||||||||||||||||    
T  33134291 atgggttccttaaacaatgcctttaagacacttgttaacaag 33134332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 464 - 532
Target Start/End: Original strand, 31631890 - 31631958
Alignment:
Q  464 atgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacact 532  Q
    |||| |||||||||||||||| ||| | ||||||||| |  |||||||||||||| |||||| ||||||    
T  31631890 atgtttgacttatattttcaagacaaactttctttttgtaagttccttaaacaatgctcttaggacact 31631958  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 537
Target Start/End: Original strand, 24810685 - 24810757
Alignment:
Q  465 tgtatgacttatattttcaaaacataatttctttttatgggttccttaaacaatactcttaagacacttgtta 537  Q
    |||| ||||| ||||||| ||||| ||| ||||||  ||  || ||||||||||||||||||| |||||||||    
T  24810685 tgtaggacttgtattttctaaacaaaatctcttttcgtgaattgcttaaacaatactcttaaggcacttgtta 24810757  T

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Target: scaffold0002 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 404 - 542
Target Start/End: Original strand, 433879 - 434017
Alignment:
Q  404 tgtttaagcatttaaaaataataatttttgtattggaaattgtacggttatgactttaaca--tgtatgacttatattttcaaaacataatttcttttta 501  Q
    ||||||||||| ||||| ||  || ||| |||||| ||||||||   ||||||||||||||  ||| |||||||||||||||| ||||||||| |||||     
T  433879 tgtttaagcatataaaagtagcaactttcgtattgtaaattgtaa--ttatgactttaacaagtgtttgacttatattttcaagacataatttttttttg 433976  T
Q  502 tgggttccttaaacaatactcttaagacacttgttaacaag 542  Q
    |||||| |||||||||| | ||||||  |||||||||||||    
T  433977 tgggtttcttaaacaatgcccttaaggtacttgttaacaag 434017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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