View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5547_low_6 (Length: 254)
Name: NF5547_low_6
Description: NF5547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5547_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 39424637 - 39424394
Alignment:
| Q |
1 |
ctcatgacattcaaaatcaaccctattcaaatggagagttttaagactaggtaaatgtaaatccacttgagaattatctcctacaattaagtttctcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39424637 |
ctcatgacattcaaaatcaaccctattcaaatggagagttttaagactaggtaaatgtaaatccacttgagaattatctcctacaattaagtttctcaac |
39424538 |
T |
|
| Q |
101 |
ttaagaacctttagcgttccagaactaagaatagtagtaggtaattcaattatatagcgagaaatcttagacaggtcgaggcataagtttagtattccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39424537 |
ttaagaacctttagcgttccagaactaagaatagtagtaggtaattcaattatatagcgacaaatcttagacaggtcgaggcataagtttagtattccac |
39424438 |
T |
|
| Q |
201 |
gttgccctacaaggtaaacaaattgattgacatcctttttgatg |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39424437 |
gttgccctacaaggtaaacaaattgattgacatccttttggatg |
39424394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 39437659 - 39437417
Alignment:
| Q |
2 |
tcatgacattcaaaatcaaccctattcaaatggagagttttaagactaggtaaatgtaaatccacttgagaattatctcctacaattaagtttctcaact |
101 |
Q |
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|||||| || ||||||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||||| || |||||||||||||| |
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| T |
39437659 |
tcatgagatccaaaatcaaccttatgcaaatggagagtttgaagactaggtaaatataaatccacttgagaaatatctcccaccgttaagtttctcaacc |
39437560 |
T |
|
| Q |
102 |
taagaacctttagcgttccagaactaagaatagtagtaggtaattcaattatatagcgagaaatcttagacaggtcgaggcataagtttagtattccacg |
201 |
Q |
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| T |
39437559 |
taagaacctttagtgttctacaactaaaaatagtagcaggtaatttaattaaatagcgacaactcttagatagattgaggtacaagttttgtattccacg |
39437460 |
T |
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| Q |
202 |
ttgccctacaaggtaaacaaattgattgacatcctttttgatg |
244 |
Q |
| |
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|||| |||| |||| |||||||||||||||||||||| |||| |
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| T |
39437459 |
ttgcagtacatggtacacaaattgattgacatccttttggatg |
39437417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 39457611 - 39457849
Alignment:
| Q |
1 |
ctcatgacattcaaaatcaaccctattcaaatggagagttttaagactaggtaaatgtaaatccacttgagaattatctcctacaattaagtttctcaac |
100 |
Q |
| |
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||||| ||||| |||||||| | ||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||| ||| |||||||||||||| |
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| T |
39457611 |
ctcataacatttaaaatcaatcttatgcaaatggagagttttaagactaggtaaatatatatccacttgagaaatatctcccacagttaagtttctcaac |
39457710 |
T |
|
| Q |
101 |
ttaagaacctttagcgttccagaactaagaatagtagtaggtaattcaattatatagcgagaaatcttagacaggtcgaggcataagtttagtattccac |
200 |
Q |
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|||||||||||||| |||| | |||||||||| |||| |||||||||||| || ||||| || |||| ||||||||||||| |||||| ||||||| | |
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| T |
39457711 |
ttaagaacctttagggttctacaactaagaatggtagcgggtaattcaattgtaaagcgacaatacttatacaggtcgaggcacaagttttgtattcctc |
39457810 |
T |
|
| Q |
201 |
gttgccctacaaggtaaacaaattgattgacatcctttt |
239 |
Q |
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|||| ||||||||||||||||||||||| ||| |||| |
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| T |
39457811 |
gttgtagtacaaggtaaacaaattgattgatatcgtttt |
39457849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 39463130 - 39463378
Alignment:
| Q |
1 |
ctcatgacattcaaaatcaaccctattcaaatggagagttttaagactaggtaaatgtaaatccacttgagaattatctcctacaattaagtttctcaac |
100 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||| || ||||||| ||||| |
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| T |
39463130 |
ctcatgacatccaaactcaaccctattcaaatggagaattttaggactaggtaaatataaatccacttgagagatatctcccaccgataagtttttcaac |
39463229 |
T |
|
| Q |
101 |
ttaagaacctttagcgttccagaactaagaatagtagtaggtaattcaattatatagcgagaaatcttagacaggtcgaggcataagtttagtattccac |
200 |
Q |
| |
|
||||||||||||| |||| | |||||||| |||||| ||||||||||||||| | |||| | |||||||||||| |||| |||||| ||||||||| |
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| T |
39463230 |
ttaagaacctttattgttctacaactaagagtagtagcaggtaattcaattatctcgcgattactcttagacaggttgaggtgcaagttttgtattccac |
39463329 |
T |
|
| Q |
201 |
gttgccctacaaggtaaacaaattgattgacatcctttttgatgatgtcc |
250 |
Q |
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||| | |||| |||||| |||||||||||||||||||| || ||||||| |
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| T |
39463330 |
gtt-cagtacatggtaaaaaaattgattgacatccttttggacgatgtcc |
39463378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 14350300 - 14350364
Alignment:
| Q |
2 |
tcatgacattcaaaatcaaccctattcaaatggagagttttaagactaggtaaatgtaaatccac |
66 |
Q |
| |
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||||||||| |||||| ||||||| |||||||||||||||||| || |||||||| || |||||| |
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| T |
14350300 |
tcatgacatccaaaataaaccctactcaaatggagagttttaacacaaggtaaatctatatccac |
14350364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 13465172 - 13465226
Alignment:
| Q |
2 |
tcatgacattcaaaatcaaccctattcaaatggagagttttaagactaggtaaat |
56 |
Q |
| |
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||||||||| |||||| |||||| ||||||||||||||||||||| |||||||| |
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| T |
13465172 |
tcatgacatccaaaatgaaccctgctcaaatggagagttttaagacaaggtaaat |
13465226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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