View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5547_low_7 (Length: 251)
Name: NF5547_low_7
Description: NF5547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5547_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39424698 - 39424942
Alignment:
| Q |
1 |
tgtgtgatggattttcaaagccgtttttcggatgaatttgcagcctttcccaatttgatcaaggcaaggattactgaattctatattccacttagtatgg |
100 |
Q |
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| T |
39424698 |
tgtgtgatggatttccaaagccgtttttcggatgaatttgcagcctttcccaatttgatcaaggcaaggattactgaattctatattccacttagtatgg |
39424797 |
T |
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| Q |
101 |
tttgtaaggcaaagacgctacatattgaagtggtatgaatatcgtcgtcctaactcctaaataaacgtttaatgaaattttgattttcttactatacata |
200 |
Q |
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| T |
39424798 |
tttgtaaggcaaagacgctacatattgaagtggtatgaatatcgtcgtcctaactcctaaataaacgtttaatttaattttgattttcttactatacata |
39424897 |
T |
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| Q |
201 |
catatc----taatgttgtgtcttgtgtgactcatgaagcctatg |
241 |
Q |
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| T |
39424898 |
catatctaattaatgttgtgtcttgtgtgactcatgaagcctatg |
39424942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 39457506 - 39457307
Alignment:
| Q |
42 |
agcctttcccaatttgatcaaggcaaggattactgaattctatattccacttagtatggtttgtaaggcaaagacgctacatattgaa---gtggtatga |
138 |
Q |
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| T |
39457506 |
agccttacccagtttgatcaaggctaggatttgtgaattacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatga |
39457407 |
T |
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| Q |
139 |
atatcgtc--gtcctaactcctaaataaac----gtttaatgaaattttgattttcttactatacatacatatctaatgttgtgtcttgtgtgactcatg |
232 |
Q |
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| T |
39457406 |
atatcatatggtcctaactcctaaataaataaaagtttgatgaaactatgattttcgtactatatatgcatatttaatgttgtgtcttgtgtaactcatg |
39457307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 186
Target Start/End: Original strand, 39437781 - 39437912
Alignment:
| Q |
58 |
atcaaggcaaggattactgaattctatattccacttagtatggtttgtaaggcaaagacgctacatattg---aagtggtatgaatatcgtcgtcctaac |
154 |
Q |
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| T |
39437781 |
atcaaggcaaggattagtgaattctttgttccacttagtatggtttgtaaagcagagaacttacgtatagaaaaagtggtatgtatatcgtggtgctaac |
39437880 |
T |
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| Q |
155 |
tcctaaataaacgtttaatgaaattttgattt |
186 |
Q |
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| T |
39437881 |
tcctaaataaacctttaataaaattgtgattt |
39437912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 39463018 - 39462936
Alignment:
| Q |
52 |
aatttgatcaaggcaaggattactgaattctatattccacttagtatggtttgtaaggcaaagacgctacatattgaagtggta |
135 |
Q |
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| T |
39463018 |
aatttgatcaaggcaagggttaatgaattgtatat-ccacttagtatggtttgtaaggcagagaccctatgttttgaagtggta |
39462936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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