View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5548-Insertion-2 (Length: 924)

Name: NF5548-Insertion-2
Description: NF5548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5548-Insertion-2
NF5548-Insertion-2
[»] chr8 (27 HSPs)
chr8 (7-917)||(10667353-10668255)
chr8 (627-878)||(24191380-24191639)
chr8 (627-727)||(39174740-39174840)
chr8 (765-866)||(38129-38232)
chr8 (627-717)||(32553930-32554020)
chr8 (627-717)||(35801002-35801092)
chr8 (627-717)||(39173119-39173209)
chr8 (627-727)||(10669458-10669558)
chr8 (627-709)||(7844714-7844796)
chr8 (627-717)||(32552299-32552389)
chr8 (765-854)||(22621016-22621105)
chr8 (627-727)||(24192676-24192776)
chr8 (765-866)||(42793847-42793949)
chr8 (627-727)||(35799455-35799554)
chr8 (762-864)||(31844513-31844616)
chr8 (774-856)||(24068472-24068553)
chr8 (766-866)||(45395885-45395985)
chr8 (740-848)||(43203164-43203273)
chr8 (762-859)||(7844854-7844944)
chr8 (765-811)||(39516422-39516468)
chr8 (659-727)||(43202131-43202199)
chr8 (627-709)||(35070688-35070770)
chr8 (765-802)||(7770142-7770179)
chr8 (765-802)||(7777819-7777856)
chr8 (765-802)||(7795912-7795949)
chr8 (659-727)||(31845807-31845875)
chr8 (765-802)||(7815189-7815226)
[»] chr3 (23 HSPs)
chr3 (627-883)||(10301666-10301931)
chr3 (740-883)||(10339842-10339985)
chr3 (627-708)||(7270326-7270407)
chr3 (765-864)||(47766822-47766922)
chr3 (627-727)||(53194624-53194724)
chr3 (627-733)||(48083230-48083336)
chr3 (765-864)||(48253078-48253178)
chr3 (627-798)||(7271529-7271706)
chr3 (767-866)||(53809365-53809462)
chr3 (765-866)||(14744211-14744311)
chr3 (627-708)||(44601652-44601733)
chr3 (658-717)||(10338772-10338831)
chr3 (762-859)||(44601794-44601890)
chr3 (627-703)||(48084990-48085066)
chr3 (628-727)||(54110296-54110395)
chr3 (765-826)||(21515408-21515469)
chr3 (762-811)||(54750368-54750417)
chr3 (627-727)||(44603055-44603155)
chr3 (762-798)||(48084676-48084712)
chr3 (627-705)||(54108542-54108620)
chr3 (627-727)||(10300942-10301043)
chr3 (627-724)||(10339986-10340082)
chr3 (627-708)||(46368811-46368892)
[»] chr4 (30 HSPs)
chr4 (627-878)||(44499839-44500097)
chr4 (765-864)||(47667323-47667423)
chr4 (627-855)||(49895043-49895279)
chr4 (627-727)||(44498463-44498563)
chr4 (627-734)||(56085350-56085457)
chr4 (765-866)||(46795895-46795997)
chr4 (620-716)||(19750317-19750413)
chr4 (620-716)||(19789393-19789489)
chr4 (765-854)||(41348384-41348473)
chr4 (765-864)||(29665445-29665545)
chr4 (765-864)||(38554074-38554174)
chr4 (765-864)||(3528335-3528438)
chr4 (627-709)||(4872262-4872344)
chr4 (765-864)||(56001139-56001240)
chr4 (762-864)||(26631086-26631190)
chr4 (627-727)||(45535049-45535149)
chr4 (659-811)||(36846482-36846640)
chr4 (638-727)||(1519825-1519914)
chr4 (762-878)||(4872090-4872202)
chr4 (627-727)||(23104020-23104120)
chr4 (762-859)||(56086425-56086522)
chr4 (659-734)||(1521200-1521275)
chr4 (765-863)||(52137574-52137673)
chr4 (636-676)||(1831327-1831367)
chr4 (632-676)||(6348163-6348207)
chr4 (659-727)||(26629826-26629894)
chr4 (636-676)||(37882846-37882886)
chr4 (739-795)||(35348919-35348975)
chr4 (739-795)||(39056547-39056603)
chr4 (765-811)||(26376455-26376501)
[»] chr7 (22 HSPs)
chr7 (627-862)||(3330695-3330934)
chr7 (627-727)||(44376701-44376801)
chr7 (627-727)||(44385568-44385668)
chr7 (627-726)||(3332171-3332270)
chr7 (627-727)||(44372732-44372832)
chr7 (627-727)||(44381588-44381688)
chr7 (765-866)||(17288109-17288213)
chr7 (627-717)||(9081396-9081486)
chr7 (640-734)||(29589276-29589370)
chr7 (765-866)||(41515141-41515243)
chr7 (765-866)||(35296686-35296786)
chr7 (627-727)||(16755874-16755974)
chr7 (627-702)||(48312691-48312766)
chr7 (765-866)||(28326262-28326361)
chr7 (762-863)||(30333419-30333521)
chr7 (762-824)||(43442672-43442734)
chr7 (628-705)||(48312028-48312105)
chr7 (765-848)||(45721653-45721737)
chr7 (762-859)||(666871-666968)
chr7 (740-795)||(10955968-10956023)
chr7 (636-677)||(32256458-32256499)
chr7 (831-864)||(45089669-45089702)
[»] chr1 (22 HSPs)
chr1 (627-863)||(6047922-6048163)
chr1 (765-854)||(26803098-26803187)
chr1 (627-734)||(6049430-6049537)
chr1 (765-854)||(40110534-40110623)
chr1 (627-734)||(3615250-3615357)
chr1 (627-734)||(52076534-52076641)
chr1 (627-727)||(3617510-3617610)
chr1 (627-734)||(9226221-9226328)
chr1 (638-734)||(5611740-5611836)
chr1 (765-866)||(40533469-40533572)
chr1 (659-734)||(26287790-26287865)
chr1 (762-855)||(48528773-48528868)
chr1 (627-701)||(17190556-17190630)
chr1 (765-811)||(24516479-24516525)
chr1 (762-811)||(5611880-5611929)
chr1 (638-727)||(26286426-26286515)
chr1 (627-708)||(52078126-52078207)
chr1 (659-727)||(5613098-5613166)
chr1 (762-859)||(12667148-12667246)
chr1 (627-727)||(27556273-27556373)
chr1 (833-863)||(51446712-51446742)
chr1 (833-862)||(27557562-27557591)
[»] chr5 (8 HSPs)
chr5 (650-859)||(10736811-10737028)
chr5 (627-727)||(9220473-9220573)
chr5 (829-864)||(224458-224493)
chr5 (829-866)||(5975965-5976002)
chr5 (762-853)||(4124902-4124995)
chr5 (765-839)||(8188098-8188171)
chr5 (740-811)||(9219299-9219370)
chr5 (767-851)||(9170774-9170858)
[»] chr2 (6 HSPs)
chr2 (627-727)||(23233709-23233809)
chr2 (627-709)||(23231543-23231625)
chr2 (765-863)||(4919975-4920074)
chr2 (767-866)||(19397680-19397780)
chr2 (833-863)||(45699746-45699776)
chr2 (765-814)||(42368230-42368279)
[»] chr6 (3 HSPs)
chr6 (636-826)||(18242217-18242414)
chr6 (643-726)||(18240418-18240502)
chr6 (765-826)||(29675622-29675683)
[»] scaffold0219 (1 HSPs)
scaffold0219 (767-856)||(7044-7133)
[»] scaffold0687 (1 HSPs)
scaffold0687 (765-802)||(6497-6534)


Alignment Details
Target: chr8 (Bit Score: 650; Significance: 0; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 7 - 917
Target Start/End: Original strand, 10667353 - 10668255
Alignment:
Q  7 acttgatgtaaagaatgtgtttcttcatggtgaccttaaataaacaatatacatagatatcccacctggatattctacagcctctggtgttgaaatagct 106  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||    
T  10667353 acttgatgtaaagaatgtgtttattcatggtgaccttaaataaacaatatacatggatatcccacctggatattctacggcctctggtgttgaaatggct 10667452  T
Q  107 caaaagcaacaacaatctctatatgcattcaaacagtcatctcgaacatggttttgtcatttcagttcaacgatgaaaaagtatgggtttcaaaaaagaa 206  Q
    || |||||||||||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  10667453 cacaagcaacaacaatctctatatgcattcaaagagtcacctagaacatggtttggtaatttcagttcaacgatgaaaaagtatgggtttcaaaaaagaa 10667552  T
Q  207 actctgatcatactctttttctaaatcatcgaaggggaaaggtgacaactctaataatatatgcagatgacatgattattacaagagatgatgcagaaga 306  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10667553 actatgatcatactctttttctaaatcatcgagggggaaaggtgacaactctaataatatatgcagatgacatgattattacaagagatgatgcagaaga 10667652  T
Q  307 aattactaggcttcaaaagcaattgtcagcaaaatttgaaatggaaaactaggggggtaaagtagttccttggaatggaagtctctagatcaaaacaagg 406  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||||||    
T  10667653 aattactaggcttcaaaagcaattgtcaacaaaatttgaaatggaaaactaggggg-taaattagttctttggaattgaagtctctagatcaaaacaagg 10667751  T
Q  407 tatatttctatctcaaaggaagtatgtgttggatctactaacagaagtgggtctcttagactgtaaaccaattgatactccaattgtacaaaagcacaaa 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10667752 tatatttctatctcaaaggaagtatgtgttggatctactaacagaagtgggtctcttagactgtaaaccaattgatactccaattgtacaaaaccacaaa 10667851  T
Q  507 cttggagtatatgtggaccaagtgccaacgaacaaagagaggtgccaaaggttggtcggtaaacttatatatttatttcatactctgccagacatagcct 606  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  10667852 cttggagtatatgtggaccaagtgacaacgaacaaagagaggtgccaaaggttggtcggtaaacttatatatttatctcatactctgccaaacatagcct 10667951  T
Q  607 atgatttaagtgtaaagctgaattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctc 706  Q
    |||||  |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||    
T  10667952 atgatgaaagtgtaaggctaaattaatcaaatggtccctcaactaatttcgagttttcattttggtcccataaattttaaaatcagcattttggtccctc 10668051  T
Q  707 aacatttgctctgttagtcaatttggtctcacc-------tttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatc 799  Q
    |||||||||||||||||||||||||||| || |       ||||||||||||||        ||||  ||||    |||||||||||||||||||  |||    
T  10668052 aacatttgctctgttagtcaatttggtcacatccgttggttttttaatgtctaa--------attt--tttt----atttgattgaatgtccattaaatc 10668137  T
Q  800 taacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttcttcttcctcatatatatcaacatttctagannnnnnnccttccaaa 899  Q
    ||||||||| ||  |||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||       |||||||||    
T  10668138 taacagtgacccgtcagcacataattttttcacttttcttcatcttctctcttcttcttcctcatatatatcaacattttcagatttttttccttccaaa 10668237  T
Q  900 atacaaatcaagtgtttt 917  Q
    ||||||||||||||||||    
T  10668238 atacaaatcaagtgtttt 10668255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 627 - 878
Target Start/End: Original strand, 24191380 - 24191639
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||||||||| |||||||||||||||||||||||| |||| ||||||| | | ||||||||| |||||||||| || ||| |||||||||||| |||    
T  24191380 aattaatcaaatgatccctcaactaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtctcttaacttttgctctgttactca 24191479  T
Q  727 atttggtc-------tcacctttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcac 819  Q
    | ||| ||       | |  || ||||||||||||       |||||||||||||| |||||||| ||||||||||||||| | ||||||||  ||||||    
T  24191480 aattgatccactccgttagtttgttaatgtctaaattttttgatttgattttaaccgtttgattgcatgtccattgtatct-atagtgaaccgtcagcac 24191578  T
Q  820 ataa-tttcctcacttttcatcatcttctctcttcttcttcctc-atatatatcaacattt 878  Q
     ||| |||  | | |||||||||||||||||||||||||||||| || |||||||||||||    
T  24191579 ctaattttttttatttttcatcatcttctctcttcttcttcctcaatctatatcaacattt 24191639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 627 - 727
Target Start/End: Complemental strand, 39174840 - 39174740
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||||||||||||||||||||||||   |||||||||||| |||| || ||||||||||||| ||||||||||||||||| ||||||| |||| |||    
T  39174840 aattaatcaaatggtccctcaactaattataagttttcattttggtcctataagttttaaaatcatcattttggtccctcaacttttgctccgttattca 39174741  T
Q  727 a 727  Q
    |    
T  39174740 a 39174740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 765 - 866
Target Start/End: Original strand, 38129 - 38232
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcct--cacttttcatcatcttctctcttcttcttcctc 862  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||  |||||| ||||||  |  ||||||||||||||||||||||||| |||||||    
T  38129 tgattttaaccatttaattgcatgtccattgtatttaacagtgaaccgtcagcacctaatttttttccacttttcatcatcttctctcttctccttcctc 38228  T
Q  863 atat 866  Q
    ||||    
T  38229 atat 38232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 627 - 717
Target Start/End: Complemental strand, 32554020 - 32553930
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctc 717  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||| || ||| ||||||||  ||||||||||||||||| |||||||    
T  32554020 aattaatcaaatggtccctcaactaattacgagttttcattttgatcctataagtcttaaaatcgtcattttggtccctcaacttttgctc 32553930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 627 - 717
Target Start/End: Complemental strand, 35801092 - 35801002
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctc 717  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||| || ||| ||||||||  |||||| |||||||||| |||||||    
T  35801092 aattaatcaaatggtccctcaactaattacgagttttcattttggtcctataagtcttaaaatcgtcattttagtccctcaacttttgctc 35801002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 627 - 717
Target Start/End: Original strand, 39173119 - 39173209
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctc 717  Q
    |||||||||||||||||||||| ||||| |||||||||||||| |||| || ||| ||||||||  ||||||||||||||||| |||||||    
T  39173119 aattaatcaaatggtccctcaattaattacgagttttcattttggtcctataagtcttaaaatcgtcattttggtccctcaacttttgctc 39173209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 627 - 727
Target Start/End: Complemental strand, 10669558 - 10669458
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||| ||| |||||||||||||||| ||||||||||||| ||||||| | | ||||||||| ||||||||| ||||||| ||||||| |||| |||    
T  10669558 aattaatccaatagtccctcaactaattttgagttttcattttggtcccataaatcttaaaatcaacattttggtacctcaacgtttgctccgttattca 10669459  T
Q  727 a 727  Q
    |    
T  10669458 a 10669458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 627 - 709
Target Start/End: Original strand, 7844714 - 7844796
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaac 709  Q
    |||||||| |||||||||| |||||||| | |||||||||||| ||||||| ||| ||||||||| |||||||||||||||||    
T  7844714 aattaatccaatggtcccttaactaattaccagttttcattttggtcccataagtcttaaaatcatcattttggtccctcaac 7844796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 627 - 717
Target Start/End: Original strand, 32552299 - 32552389
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctc 717  Q
    |||||||| ||||||||||||||||||| ||||||||||||||  ||| || ||| ||||||||  ||||||||||||||||| |||||||    
T  32552299 aattaatctaatggtccctcaactaattacgagttttcattttgatcctataagtcttaaaatcgtcattttggtccctcaacttttgctc 32552389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 765 - 854
Target Start/End: Complemental strand, 22621105 - 22621016
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttct 854  Q
    ||||||||| |||||||||| ||||||||||||| |||| |||||||  || ||| ||||||  ||||||||||||||||||||||||||    
T  22621105 tgattttaatcatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttcatcatcttctctcttct 22621016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 627 - 727
Target Start/End: Complemental strand, 24192776 - 24192676
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||| |||||||||||||| ||||||||||||||| |||| ||||||| | | ||||||||| |||||||||| |||||| ||| ||| |||| |||    
T  24192776 aattaattaaatggtccctcaattaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtctctcaacttttactccgttaatca 24192677  T
Q  727 a 727  Q
    |    
T  24192676 a 24192676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 765 - 866
Target Start/End: Original strand, 42793847 - 42793949
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcct-cacttttcatcatcttctctcttcttcttcctca 863  Q
    |||||||||||||| ||||| ||||||||||||  ||| ||||||||| |  ||| ||||||  | | ||||||||||||||||||||||||||||||||    
T  42793847 tgattttaaccattggattgcatgtccattgtaattaatagtgaaccatcgacacctaatttttttcgcttttcatcatcttctctcttcttcttcctca 42793946  T
Q  864 tat 866  Q
    |||    
T  42793947 tat 42793949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 627 - 727
Target Start/End: Original strand, 35799455 - 35799554
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||||||||||||| |||||||||| | |||||||||||| |||  || ||| ||||||| | ||||||||||||||||| ||||||| |||| |||    
T  35799455 aattaatcaaatggtcc-tcaactaattacaagttttcattttggtcttataagtcttaaaattatcattttggtccctcaacttttgctccgttattca 35799553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 762 - 864
Target Start/End: Original strand, 31844513 - 31844616
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatcatcttctctcttcttcttcc 860  Q
    ||||||||||||||| ||||||| ||||| ||||||  ||||||||||||| |||||| ||| |||  |||||||| |||||||||| ||||||| |||     
T  31844513 atttgattttaaccacttgattgcatgtctattgtaattaacagtgaaccatcagcacctaatttttttcacttttaatcatcttctatcttcttgttca 31844612  T
Q  861 tcat 864  Q
    ||||    
T  31844613 tcat 31844616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 774 - 856
Target Start/End: Original strand, 24068472 - 24068553
Alignment:
Q  774 ccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttcttc 856  Q
    ||||||||||| ||||||||||||||||| ||||||||  |||||| ||||||  |||||  |||||||||||||||||||||    
T  24068472 ccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaattt-ttcactgatcatcatcttctctcttcttc 24068553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 766 - 866
Target Start/End: Complemental strand, 45395985 - 45395885
Alignment:
Q  766 gattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcct-cacttttcatcatcttctctcttcttcttcctcat 864  Q
    |||||||||| |||||||| ||||||||||||| ||  ||| ||||| | |||| ||||||  | ||||||||||||||||| |||||||||||||||||    
T  45395985 gattttaaccgtttgattgcatgtccattgtatatat-agtaaaccatcggcacctaatttttttcacttttcatcatcttccctcttcttcttcctcat 45395887  T
Q  865 at 866  Q
    ||    
T  45395886 at 45395885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 740 - 848
Target Start/End: Complemental strand, 43203273 - 43203164
Alignment:
Q  740 tttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttca 838  Q
    |||||||||||||||       |||| ||||||| |||||||||| ||||||||||||| ||| ||||||| | |||||| ||| |||  ||||||||||    
T  43203273 tttttaatgtctaaattttttgatttaattttaaacatttgattgcatgtccattgtatttaaaagtgaactatcagcacctaatttttttcacttttca 43203174  T
Q  839 tcatcttctc 848  Q
    ||||||||||    
T  43203173 tcatcttctc 43203164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 762 - 859
Target Start/End: Original strand, 7844854 - 7844944
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttcttcttc 859  Q
    ||||||||||||||||| |||||||| |||||||||||| | ||||||||  |||||| ||||||      |||||| ||||||||||||||||||||    
T  7844854 atttgattttaaccattcgattgaatatccattgtatct-atagtgaaccgtcagcacctaattt------ttttcaccatcttctctcttcttcttc 7844944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 765 - 811
Target Start/End: Complemental strand, 39516468 - 39516422
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 811  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||    
T  39516468 tgattttaaccatttgattgcatgtccattgtatctaatagtgaacc 39516422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 659 - 727
Target Start/End: Original strand, 43202131 - 43202199
Alignment:
Q  659 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 727  Q
    ||||||||||||||||||| | |  |||||||| ||||||||||||||||| ||||| | |||||||||    
T  43202131 gttttcattttagtcccataactcgtaaaatcaacattttggtccctcaacgtttgcaccgttagtcaa 43202199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 709
Target Start/End: Complemental strand, 35070770 - 35070688
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaac 709  Q
    ||||||||||||||||| |||  ||||| | |||||||||||| |||  || ||| ||||||||| ||||||||| |||||||    
T  35070770 aattaatcaaatggtccttcagttaattaccagttttcattttggtcatataagtcttaaaatcatcattttggttcctcaac 35070688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 802
Target Start/End: Original strand, 7770142 - 7770179
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaa 802  Q
    |||||||||||||||||||| |||||||||||||||||    
T  7770142 tgattttaaccatttgattgtatgtccattgtatctaa 7770179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 802
Target Start/End: Original strand, 7777819 - 7777856
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaa 802  Q
    |||||||||||||||||||| |||||||||||||||||    
T  7777819 tgattttaaccatttgattgtatgtccattgtatctaa 7777856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 802
Target Start/End: Original strand, 7795912 - 7795949
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaa 802  Q
    |||||||||||||||||||| |||||||||||||||||    
T  7795912 tgattttaaccatttgattgtatgtccattgtatctaa 7795949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 659 - 727
Target Start/End: Complemental strand, 31845875 - 31845807
Alignment:
Q  659 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 727  Q
    ||||||||||| ||||||| | |  |||||||| ||||||||||||||||| ||||||| |||| ||||    
T  31845875 gttttcattttggtcccataactcataaaatcaacattttggtccctcaacgtttgctccgttaatcaa 31845807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 765 - 802
Target Start/End: Original strand, 7815189 - 7815226
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaa 802  Q
    |||||||||||||||||||  |||||||||||||||||    
T  7815189 tgattttaaccatttgattctatgtccattgtatctaa 7815226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 1e-56; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 627 - 883
Target Start/End: Complemental strand, 10301931 - 10301666
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||  ||||||||||||||||||||| | |||||||||| ||||||| ||| ||||||||| || | |||||| ||||| ||||||| ||||||||    
T  10301931 aattaattcaatggtccctcaactaatttccatttttcattttggtcccataagtcttaaaatcatcaatatggtccttcaacttttgctccgttagtca 10301832  T
Q  727 atttggtctcacct-------ttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcac 819  Q
    ||||||| ||  ||       ||||||||||||||       ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  10301831 atttggtgtcctctgttagttttttaatgtctaaattttttgatttgattttaaccatttgattgaatgtccattgtatttaacagtgaaccatcagcac 10301732  T
Q  820 ataa-tttcctcacttttcatcatcttctctcttcttcttcctcata--tatatcaacatttctaga 883  Q
    |||| |||  |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  10301731 ataatttttttcac-tttcatcatcttctctcttcttcttcctcatatctatatcaacatttctaga 10301666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 740 - 883
Target Start/End: Complemental strand, 10339985 - 10339842
Alignment:
Q  740 tttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttca 838  Q
    |||||||||||||||       ||||||||| ||||||||||||||||||||||||||| ||||||||||||  |||||||||| |||  ||||||||||    
T  10339985 tttttaatgtctaaattttttgatttgatttgaaccatttgattgaatgtccattgtatttaacagtgaaccgtcagcacataatttttttcacttttca 10339886  T
Q  839 tcatcttctctcttcttcttcctcatatatatcaacatttctaga 883  Q
    |||||||||||||||||| || | || ||||||||||||||||||    
T  10339885 tcatcttctctcttcttcctcat-atctatatcaacatttctaga 10339842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 627 - 708
Target Start/End: Original strand, 7270326 - 7270407
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaa 708  Q
    ||||||||||||| |||||||||||||||| |||||||||||| ||||||| ||| ||||||||| ||||||||||||||||    
T  7270326 aattaatcaaatgatccctcaactaatttccagttttcatttttgtcccataagtcttaaaatcaacattttggtccctcaa 7270407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 765 - 864
Target Start/End: Complemental strand, 47766922 - 47766822
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatcatcttctctcttcttcttcctca 863  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||  |||||| ||| |||  |||||||| ||||||||||||||||||||| ||||    
T  47766922 tgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaatttttttcacttttgatcatcttctctcttcttctttctca 47766823  T
Q  864 t 864  Q
    |    
T  47766822 t 47766822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 627 - 727
Target Start/End: Complemental strand, 53194724 - 53194624
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||| ||||||||||||||||||| | |||||||||||| || |||| ||||||||||||| ||||||||||| ||||| |||||| ||||| |||    
T  53194724 aattaatccaatggtccctcaactaattaccagttttcattttggttccataagttttaaaatcatcattttggtccttcaacttttgctttgttattca 53194625  T
Q  727 a 727  Q
    |    
T  53194624 a 53194624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 627 - 733
Target Start/End: Original strand, 48083230 - 48083336
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||| ||||||||||||| ||||||||   ||||||||||||  |||| | ||||||||||||| ||||||||||||| ||| ||||||| |||| |||    
T  48083230 aattattcaaatggtcccttaactaattctcagttttcattttgatcccttaagttttaaaatcatcattttggtcccttaacctttgctccgttattca 48083329  T
Q  727 atttggt 733  Q
    |||||||    
T  48083330 atttggt 48083336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 765 - 864
Target Start/End: Original strand, 48253078 - 48253178
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatcatcttctctcttcttcttcctca 863  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||   || ||| ||| |||  ||| ||||| |||||||||||||||||||||||||    
T  48253078 tgattttaaccatttgattgcatgtccattgtatctaatagtgaactgtcaacacctaatttttttcatttttcttcatcttctctcttcttcttcctca 48253177  T
Q  864 t 864  Q
    |    
T  48253178 t 48253178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 627 - 798
Target Start/End: Complemental strand, 7271706 - 7271529
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||| ||||||||||||||||||||| | |||| |||||| || ||| ||||||||||||||||| ||||| ||| ||| ||||||| |||| |||    
T  7271706 aattaatccaatggtccctcaactaatttccaatttttattttaatctcataagttttaaaatcagcatgttggt-ccttaacttttgctccgttattca 7271608  T
Q  727 atttggtc-------tcacctttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtat 798  Q
    |||  |||       | |  |||||||||||||||       |||| |||||||||||||||||| |||||||||||||    
T  7271607 attccgtcccctccgttagttttttaatgtctaaactttttgatttaattttaaccatttgattgcatgtccattgtat 7271529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 767 - 866
Target Start/End: Complemental strand, 53809462 - 53809365
Alignment:
Q  767 attttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatcatcttctctcttcttcttcctcata 865  Q
    |||||||||||||||||| ||||| ||||||| |||||||||| |  |||||| ||| |||  |||||||   |||||||||||||||||||||||||||    
T  53809462 attttaaccatttgattgcatgtctattgtatttaacagtgaatcgtcagcacctaatttttttcacttt---tcatcttctctcttcttcttcctcata 53809366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 765 - 866
Target Start/End: Original strand, 14744211 - 14744311
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttcttcttcctcat 864  Q
    |||||||||||  ||||||| ||||||||| ||  ||  ||||||||| |||||| ||||||  |||||||||||||||||| || ||||||||||||||    
T  14744211 tgattttaaccgattgattgcatgtccattatacatat-agtgaaccatcagcacctaattttttcacttttcatcatcttccctgttcttcttcctcat 14744309  T
Q  865 at 866  Q
    ||    
T  14744310 at 14744311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 627 - 708
Target Start/End: Original strand, 44601652 - 44601733
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaa 708  Q
    ||||||||||||||||||||||||||||   |||||||||||||||| ||| ||| ||||||||| || |  ||||||||||    
T  44601652 aattaatcaaatggtccctcaactaattctcagttttcattttagtctcataagtcttaaaatcatcaatcgggtccctcaa 44601733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 658 - 717
Target Start/End: Original strand, 10338772 - 10338831
Alignment:
Q  658 agttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctc 717  Q
    |||||||||||| ||||||| | ||||||||||| ||||||||||||||||| |||||||    
T  10338772 agttttcattttggtcccataaattttaaaatcatcattttggtccctcaacgtttgctc 10338831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 762 - 859
Target Start/End: Original strand, 44601794 - 44601890
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttcttcttc 859  Q
    |||||||||||||| || |||||||| |||||||||||| | ||||||||  |||||  ||||||  | | ||||||||||| |||||||||||||||    
T  44601794 atttgattttaaccgttcgattgaatatccattgtatct-atagtgaaccgtcagcatctaatttttttatttttcatcatcctctctcttcttcttc 44601890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 703
Target Start/End: Complemental strand, 48085066 - 48084990
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtcc 703  Q
    ||||||||||||||||||||||||||||   |||||| ||||| ||| | | ||| ||||||||| |||||||||||    
T  48085066 aattaatcaaatggtccctcaactaattctcagtttttattttggtctcttaagtcttaaaatcatcattttggtcc 48084990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 628 - 727
Target Start/End: Complemental strand, 54110395 - 54110296
Alignment:
Q  628 attaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 727  Q
    ||||||||||||||||||||| |||||   | |||||  ||| ||| ||| ||| ||||||||| |||||| |||||||| | |||||||||||| ||||    
T  54110395 attaatcaaatggtccctcaattaattctcaattttcgctttggtctcataagtcttaaaatcatcattttagtccctcatcttttgctctgttattcaa 54110296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 826
Target Start/End: Original strand, 21515408 - 21515469
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataattt 826  Q
    |||||||||||| ||||||| | ||||||||||||||| |||| |||| || ||||||||||    
T  21515408 tgattttaaccacttgattgcaggtccattgtatctaatagtgcaccatcaccacataattt 21515469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 762 - 811
Target Start/End: Complemental strand, 54750417 - 54750368
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 811  Q
    ||||||||||||||||||||||| ||||||| ||||| | ||||||||||    
T  54750417 atttgattttaaccatttgattgtatgtccaatgtattttacagtgaacc 54750368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 727
Target Start/End: Complemental strand, 44603155 - 44603055
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||| |||||||||||||||||||||  |||||| ||||| ||||||| | | ||||||| | || |   |||||||||| ||||||| |||| |||    
T  44603155 aattaattaaatggtccctcaactaattttcagtttttattttggtcccataaatcttaaaataatcaatcgagtccctcaacttttgctccgttattca 44603056  T
Q  727 a 727  Q
    |    
T  44603055 a 44603055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 762 - 798
Target Start/End: Complemental strand, 48084712 - 48084676
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtat 798  Q
    ||||||||||||||||| |||||||||||||||||||    
T  48084712 atttgattttaaccattcgattgaatgtccattgtat 48084676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 627 - 705
Target Start/End: Original strand, 54108542 - 54108620
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccct 705  Q
    |||||| | |||||||||||||||||||   ||||||| |||| ||||||| ||| ||||||| | ||||||| |||||    
T  54108542 aattaacccaatggtccctcaactaattctcagttttcgttttggtcccataagtcttaaaattatcattttgatccct 54108620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 727
Target Start/End: Original strand, 10300942 - 10301043
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcg-agttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtc 725  Q
    |||||||  |||||||||| |||||||||   |||||||||||| || |||| | | ||||||||| || | |||||||||||| ||||||| |||| ||    
T  10300942 aattaattcaatggtcccttaactaatttttcagttttcattttggttccataaatcttaaaatcatcaatctggtccctcaacgtttgctccgttattc 10301041  T
Q  726 aa 727  Q
    ||    
T  10301042 aa 10301043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 724
Target Start/End: Complemental strand, 10340082 - 10339986
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagt 724  Q
    |||||||  ||||||||||||||||||||| | |||||||||| ||| |||   | ||||||||| ||  ||||||| ||||| ||||||| ||||||    
T  10340082 aattaattcaatggtccctcaactaatttccatttttcattttggtctcatatttcttaaaatcatca-attggtccttcaacttttgctccgttagt 10339986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 708
Target Start/End: Original strand, 46368811 - 46368892
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaa 708  Q
    ||||||||||||||||||||| ||||||   ||| |||||||| ||| ||| ||  ||||||||| ||||||| ||| ||||    
T  46368811 aattaatcaaatggtccctcagctaattataagtattcattttggtctcataaggcttaaaatcatcattttgatccttcaa 46368892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 3e-35; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 627 - 878
Target Start/End: Complemental strand, 44500097 - 44499839
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||| |||| ||||||||| ||||||||||||||| |||| ||||||| | | ||||||||| ||||||||||||| ||| ||||||| ||||||||    
T  44500097 aattaatgaaattgtccctcaattaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtcccttaacttttgctccgttagtca 44499998  T
Q  727 atttggtc-------tcacctttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcac 819  Q
    | ||| ||       | |  || |||||||||| |       |||||||||||||| |||||||| ||||||||||||||||  ||||||||  ||||||    
T  44499997 aattgatccactccgttagtttgttaatgtctatattttttgatttgattttaaccgtttgattgcatgtccattgtatctat-agtgaaccgtcagcac 44499899  T
Q  820 ataatttcctcacttttcatcatcttctctcttcttcttcctc-atatatatcaacattt 878  Q
     ||||||  | | |||||||||||||||||||||||||||||| || |||||||||||||    
T  44499898 ctaatttttttatttttcatcatcttctctcttcttcttcctcaatctatatcaacattt 44499839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 765 - 864
Target Start/End: Original strand, 47667323 - 47667423
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatcatcttctctcttcttcttcctca 863  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||  |||||| ||| |||  |||||||||||||||||||||||||||||||||||    
T  47667323 tgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcagcacctaatttttttcacttttcatcatcttctctcttcttcttcctca 47667422  T
Q  864 t 864  Q
    |    
T  47667423 t 47667423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 627 - 855
Target Start/End: Original strand, 49895043 - 49895279
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggt-ccctcaacatttgctctgttagtc 725  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||||||| |||| || ||| | ||||||||| |||||||| ||||||| || | ||    
T  49895043 aattaatcaaatggtccctcaactaattaccagttttcattttggtcccataagttctataattatcattttggtcccctcaacttttgctccgtcattc 49895142  T
Q  726 aatttggtctc-acc------tttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagca 818  Q
    ||||||||||| |||      || |||||| ||||        |||||||| |||||||||||||| | |||| |||||||||| ||||||||| || ||    
T  49895143 aatttggtctctaccgttagtttcttaatgcctaatttttttgatttgattctaaccatttgattgcaggtccgttgtatctaatagtgaaccatcaaca 49895242  T
Q  819 cataatttcctcacttttcatcatcttctctcttctt 855  Q
    | ||||||  |  |||||| |||||||||||||||||    
T  49895243 cctaatttttttccttttcttcatcttctctcttctt 49895279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 627 - 727
Target Start/End: Original strand, 44498463 - 44498563
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||| |||||||||||||| ||||||||||||||| |||| ||||||| | | ||||||||| ||||||||||||||||| |||||||||||| |||    
T  44498463 aattaatgaaatggtccctcaattaatttcgagttttcgttttggtcccataactcttaaaatcatcattttggtccctcaacttttgctctgttattca 44498562  T
Q  727 a 727  Q
    |    
T  44498563 a 44498563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 627 - 734
Target Start/End: Original strand, 56085350 - 56085457
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||||||||||||| |||||||||| | |||||||||||| ||| ||| ||| ||||||||| ||||||||||||||||  ||||||  |||| |||    
T  56085350 aattaatcaaatggtccatcaactaattaccagttttcattttggtctcataagtcttaaaatcatcattttggtccctcaatgtttgcttcgttattca 56085449  T
Q  727 atttggtc 734  Q
    ||||||||    
T  56085450 atttggtc 56085457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 765 - 866
Target Start/End: Complemental strand, 46795997 - 46795895
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatcatcttctctcttcttcttcctca 863  Q
    |||||||||||||||||||| ||||||||||||| ||| ||||||||  | |||| ||| |||  |||||||||||||||||||||||||| ||||||||    
T  46795997 tgattttaaccatttgattgcatgtccattgtatttaatagtgaaccgtcggcacctaatttttttcacttttcatcatcttctctcttctccttcctca 46795898  T
Q  864 tat 866  Q
    |||    
T  46795897 tat 46795895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 620 - 716
Target Start/End: Complemental strand, 19750413 - 19750317
Alignment:
Q  620 aaagctgaattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgct 716  Q
    |||||| |||||||| ||||||||||||||||||| | ||||||||||||  |||||| ||||||||||||| |||||| |||| ||||| ||||||    
T  19750413 aaagctaaattaatccaatggtccctcaactaattactagttttcattttgatcccataagttttaaaatcatcattttagtccttcaacttttgct 19750317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 620 - 716
Target Start/End: Original strand, 19789393 - 19789489
Alignment:
Q  620 aaagctgaattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgct 716  Q
    |||||| |||||||| ||||||||||||||||||| | ||||||||||||  |||||| ||||||||||||| |||||| |||| ||||| ||||||    
T  19789393 aaagctaaattaatccaatggtccctcaactaattactagttttcattttgatcccataagttttaaaatcatcattttagtccttcaacttttgct 19789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 765 - 854
Target Start/End: Original strand, 41348384 - 41348473
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttct 854  Q
    ||||||||| |||||||||| ||||||||||||| |||| |||||||  || ||| ||||||  ||||||||||||||||||||||||||    
T  41348384 tgattttaatcatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttcatcatcttctctcttct 41348473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 765 - 864
Target Start/End: Complemental strand, 29665545 - 29665445
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatcatcttctctcttcttcttcctca 863  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||  ||  || ||| |||  ||||||||| |||||||||||||||||||||||||    
T  29665545 tgattttaaccatttgattgcatgtccattgtatctaattgtgaaccgtcaatacctaatttttttcacttttcttcatcttctctcttcttcttcctca 29665446  T
Q  864 t 864  Q
    |    
T  29665445 t 29665445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 765 - 864
Target Start/End: Original strand, 38554074 - 38554174
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcct-cacttttcatcatcttctctcttcttcttcctca 863  Q
    |||||||||||||||||| | | ||||||||||| ||| ||||||||  || ||| ||||||  | ||||||||||||||||||||||||||||||||||    
T  38554074 tgattttaaccatttgatcgcacgtccattgtatttaatagtgaaccgtcatcacttaatttttttcacttttcatcatcttctctcttcttcttcctca 38554173  T
Q  864 t 864  Q
    |    
T  38554174 t 38554174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 765 - 864
Target Start/End: Original strand, 3528335 - 3528438
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataat----ttcctcacttttcatcatcttctctcttcttcttcc 860  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||  || ||| ||||    ||  ||||||||||||||||||||||||| || |||    
T  3528335 tgattttaaccatttgattgcatgtccattgtatctaatagtgaaccgtcaacacctaattttatttttcacttttcatcatcttctctcttcctcctcc 3528434  T
Q  861 tcat 864  Q
    ||||    
T  3528435 tcat 3528438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 627 - 709
Target Start/End: Complemental strand, 4872344 - 4872262
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaac 709  Q
    |||||||| |||||||||||||||||||   |||||||||||| ||||||| ||| ||||||||| || ||||||||||||||    
T  4872344 aattaatccaatggtccctcaactaattctcagttttcattttggtcccataagtcttaaaatcatcaatttggtccctcaac 4872262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 765 - 864
Target Start/End: Complemental strand, 56001240 - 56001139
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcct--cacttttcatcatcttctctcttcttcttcctc 862  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |  | |||| ||||||  |  ||||||||||| ||||||||||||||| |||||    
T  56001240 tgattttaaccatttgattgcatgtccattgtatctaatagtgaatcgtcggcacctaatttttttccacttttcatcttcttctctcttcttcctcctc 56001141  T
Q  863 at 864  Q
    ||    
T  56001140 at 56001139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 762 - 864
Target Start/End: Complemental strand, 26631190 - 26631086
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa--tttcctcacttttcatcatcttctctcttcttcttc 859  Q
    ||||||||||||||| ||||||| ||||| ||||||| |||||||||| || |||||| |||  |||  |||||||| |||||||||||||||||| |||    
T  26631190 atttgattttaaccacttgattgcatgtctattgtatttaacagtgaatcatcagcacctaattttttttcacttttaatcatcttctctcttcttgttc 26631091  T
Q  860 ctcat 864  Q
     ||||    
T  26631090 atcat 26631086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 627 - 727
Target Start/End: Original strand, 45535049 - 45535149
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||||||| |||||||||||||||   |||||||||||| ||||||| ||| ||||||||| || |   |||||||||| |||||||||||| |||    
T  45535049 aattaatcaaatagtccctcaactaattctcagttttcattttggtcccataagtcttaaaatcatcaatcgagtccctcaacttttgctctgttattca 45535148  T
Q  727 a 727  Q
    |    
T  45535149 a 45535149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 659 - 811
Target Start/End: Complemental strand, 36846640 - 36846482
Alignment:
Q  659 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtctcacc------tttttaatgtcta 752  Q
    ||||||||||| ||||||| | |  |||||||| ||||||||||||||    ||||||| ||| |||||||||||| |  |      |||||||||||||    
T  36846640 gttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttcgtcaatttggtcccttccgttagtttttaatgtcta 36846541  T
Q  753 aannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 811  Q
    ||       ||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  36846540 aattttttgatttgattttaaccatttgattgcatgtccattatatttaacagtgaacc 36846482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 727
Target Start/End: Original strand, 1519825 - 1519914
Alignment:
Q  638 tggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 727  Q
    |||||||  |||||||||   ||||||||||| ||||||| | |  |||||||| ||| |||||||||||||||||||||||||||||||    
T  1519825 tggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacatttgctctgttagtcaa 1519914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 762 - 878
Target Start/End: Complemental strand, 4872202 - 4872090
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttcttcttcct 861  Q
    |||| |||||||||||| ||| ||||||||||||||||||| ||||||||  |||||| ||||||      ||||  |||||||||||||||||||||||    
T  4872202 atttcattttaaccattcgatcgaatgtccattgtatctaa-agtgaaccgtcagcacctaattt----ttttttattcatcttctctcttcttcttcct 4872108  T
Q  862 c-atatatatcaacattt 878  Q
    | || |||||||||||||    
T  4872107 caatctatatcaacattt 4872090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 627 - 727
Target Start/End: Complemental strand, 23104120 - 23104020
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||||||||||||||||||||||||   |||||||||||| ||| ||| ||| ||||||||| || |   |||||||||| ||||||| |||| |||    
T  23104120 aattaatcaaatggtccctcaactaattctcagttttcattttggtctcataagtcttaaaatcatcaatcgagtccctcaacttttgctccgttattca 23104021  T
Q  727 a 727  Q
    |    
T  23104020 a 23104020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 762 - 859
Target Start/End: Complemental strand, 56086522 - 56086425
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatcatcttctctcttcttcttc 859  Q
    ||||||||||||||||| ||||||||||||||||||||| | |||||| |  || ||| ||| |||  ||||||||||||||||  |||||||||||||    
T  56086522 atttgattttaaccattcgattgaatgtccattgtatct-atagtgaatcgtcatcacctaatttttttcacttttcatcatctcttctcttcttcttc 56086425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 659 - 734
Target Start/End: Complemental strand, 1521275 - 1521200
Alignment:
Q  659 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtc 734  Q
    |||||||||||  |||||| | |  |||||||| ||||||||||||||||| ||| ||| ||||||||||||||||    
T  1521275 gttttcattttgatcccataattcgtaaaatcaacattttggtccctcaacttttactccgttagtcaatttggtc 1521200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 863
Target Start/End: Original strand, 52137574 - 52137673
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcct--cacttttcatcatcttctctcttcttcttcctc 862  Q
    ||||||||||| |||||||| ||||||||| || || | ||||||||  |||||  ||||||  |  || ||||||||||||||||||||||||||||||    
T  52137574 tgattttaaccgtttgattgcatgtccattata-cttatagtgaaccgtcagcagctaattttttttcatttttcatcatcttctctcttcttcttcctc 52137672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 636 - 676
Target Start/End: Complemental strand, 1831367 - 1831327
Alignment:
Q  636 aatggtccctcaactaatttcgagttttcattttagtccca 676  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  1831367 aatggtccctcaattaatttcaagttttcattttagtccca 1831327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 632 - 676
Target Start/End: Original strand, 6348163 - 6348207
Alignment:
Q  632 atcaaatggtccctcaactaatttcgagttttcattttagtccca 676  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||||    
T  6348163 atcaaatggtccctcaaataatttcaagttttcattttggtccca 6348207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 659 - 727
Target Start/End: Original strand, 26629826 - 26629894
Alignment:
Q  659 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 727  Q
    ||||||||||| ||||||| | |  |||||||| ||||||||||||||||| ||||||| |||| ||||    
T  26629826 gttttcattttggtcccataactcataaaatcaacattttggtccctcaacgtttgctccgttaatcaa 26629894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 636 - 676
Target Start/End: Original strand, 37882846 - 37882886
Alignment:
Q  636 aatggtccctcaactaatttcgagttttcattttagtccca 676  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  37882846 aatggtccctcaaataatttcaagttttcattttagtccca 37882886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 739 - 795
Target Start/End: Original strand, 35348919 - 35348975
Alignment:
Q  739 ctttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattg 795  Q
    ||||||||||||||||       |||||||||||||||||||||||| |||||||||    
T  35348919 ctttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattg 35348975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 739 - 795
Target Start/End: Original strand, 39056547 - 39056603
Alignment:
Q  739 ctttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattg 795  Q
    ||||||||||||||||       |||||||||||||||||||||||| |||||||||    
T  39056547 ctttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattg 39056603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 765 - 811
Target Start/End: Original strand, 26376455 - 26376501
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 811  Q
    |||||||||||||||||||| |||| |||||||||||| ||| ||||    
T  26376455 tgattttaaccatttgattgcatgtacattgtatctaatagttaacc 26376501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 7e-33; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 627 - 862
Target Start/End: Original strand, 3330695 - 3330934
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||||||||||||||||||||||||||   |||||||||| ||| | | ||| ||||||||| ||||| ||||||||||||||||||| | || |||    
T  3330695 aattaatcaaatggtccctcaactaatttcccattttcattttggtctcttaagtcttaaaatcaccatttcggtccctcaacatttgctccgctattca 3330794  T
Q  727 atttggtc-------tcacctttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcac 819  Q
    ||||||||       | |  || ||||||||||||       |||||||||||||| |||||||| |||| |||||||||| | ||||||||  ||||||    
T  3330795 atttggtctactcaattagtttgttaatgtctaaattttttgatttgattttaaccgtttgattgcatgttcattgtatct-atagtgaaccgtcagcac 3330893  T
Q  820 ataatttcctcacttttcatcatcttctctcttcttcttcctc 862  Q
     ||||||  | | ||||||||||||||||||||||||||||||    
T  3330894 ttaattt--ttatttttcatcatcttctctcttcttcttcctc 3330934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 627 - 727
Target Start/End: Complemental strand, 44376801 - 44376701
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||||||||||||||||||||||||||| ||||  |||| ||||||| | ||||||||||| ||||||||||||| ||| |||||||  |||||||    
T  44376801 aattaatcaaatggtccctcaactaatttcgaatttttgttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctccattagtca 44376702  T
Q  727 a 727  Q
    |    
T  44376701 a 44376701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 627 - 727
Target Start/End: Complemental strand, 44385668 - 44385568
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||||||||||||||||||||||||||| ||||  |||| ||||||| | ||||||||||| ||||||||||||| ||| |||||||  |||||||    
T  44385668 aattaatcaaatggtccctcaactaatttcgaatttttgttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctccattagtca 44385569  T
Q  727 a 727  Q
    |    
T  44385568 a 44385568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 627 - 726
Target Start/End: Complemental strand, 3332270 - 3332171
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||||||||||||||||||||||||   |||||||||||| ||||||| | || |||||||| || |||||||||||||| ||||||| ||||||||    
T  3332270 aattaatcaaatggtccctcaactaattaacagttttcattttggtcccataaattctaaaatcatcaatttggtccctcaacgtttgctccgttagtca 3332171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 627 - 727
Target Start/End: Original strand, 44372732 - 44372832
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| ||| | | ||||||| | |||||||||||||| || ||||||| |||| |||    
T  44372732 aattagtcaaatggtccctcaactaatttcgagttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattca 44372831  T
Q  727 a 727  Q
    |    
T  44372832 a 44372832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 627 - 727
Target Start/End: Original strand, 44381588 - 44381688
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| ||| | | ||||||| | |||||||||||||| || ||||||| |||| |||    
T  44381588 aattagtcaaatggtccctcaactaatttcgagttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattca 44381687  T
Q  727 a 727  Q
    |    
T  44381688 a 44381688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 765 - 866
Target Start/End: Complemental strand, 17288213 - 17288109
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcct---cacttttcatcatcttctctcttcttcttcct 861  Q
    |||||||||| ||||||||| ||||||||||||| ||| ||||||||  |||||| ||||||  |   ||||||||||||||||||||||||| ||||||    
T  17288213 tgattttaactatttgattgcatgtccattgtatttaatagtgaaccgtcagcacctaattttttttccacttttcatcatcttctctcttctccttcct 17288114  T
Q  862 catat 866  Q
    |||||    
T  17288113 catat 17288109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 627 - 717
Target Start/End: Original strand, 9081396 - 9081486
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctc 717  Q
    |||||||| |||||||||||||||||||||  ||||||||||| ||||||| |||  |||||||| || |||| ||||||||| |||||||    
T  9081396 aattaatccaatggtccctcaactaatttccggttttcattttggtcccataagtcataaaatcatcaatttgctccctcaacttttgctc 9081486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 640 - 734
Target Start/End: Complemental strand, 29589370 - 29589276
Alignment:
Q  640 gtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtc 734  Q
    ||||||||||||||| | |||||||||||| |||| || ||| ||||||||| ||||||| ||||||||| ||||||| |||| | |||||||||    
T  29589370 gtccctcaactaattcccagttttcattttggtccaataagtcttaaaatcatcattttgctccctcaacttttgctccgttatttaatttggtc 29589276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 765 - 866
Target Start/End: Original strand, 41515141 - 41515243
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatcatcttctctcttcttcttcctca 863  Q
    |||||||||||||||||||| ||||||||| ||| ||| ||||||||  | |||| ||| |||  ||||||||||| |||||||||||||| ||||||||    
T  41515141 tgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaatttttttcacttttcataatcttctctcttctccttcctca 41515240  T
Q  864 tat 866  Q
    |||    
T  41515241 tat 41515243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 765 - 866
Target Start/End: Complemental strand, 35296786 - 35296686
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttcttcttcctcat 864  Q
    ||||||||||| |||||||| ||||||||| ||  ||  | ||| |||||||||| ||||||  |||||||||||||||||| || ||||||||||||||    
T  35296786 tgattttaaccgtttgattgcatgtccattatacatataa-tgagccaccagcacctaattttttcacttttcatcatcttccctattcttcttcctcat 35296688  T
Q  865 at 866  Q
    ||    
T  35296687 at 35296686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 627 - 727
Target Start/End: Original strand, 16755874 - 16755974
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||  |||||||||||||||||||   ||||||  |||| ||||||| ||||| ||||||| ||||||| ||||||||| ||||||| |||| |||    
T  16755874 aattaatttaatggtccctcaactaattctcagtttttgttttggtcccataagtttaaaaatcatcattttgatccctcaacgtttgctccgttattca 16755973  T
Q  727 a 727  Q
    |    
T  16755974 a 16755974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 627 - 702
Target Start/End: Complemental strand, 48312766 - 48312691
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtc 702  Q
    |||||||||||||||| |||||||||||   |||||||||||| ||||||| | | ||||||||| ||||||||||    
T  48312766 aattaatcaaatggtctctcaactaattcacagttttcattttggtcccataaatcttaaaatcatcattttggtc 48312691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 765 - 866
Target Start/End: Complemental strand, 28326361 - 28326262
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttcttcttcctcat 864  Q
    |||||||||||||||||||| ||||||||| ||| ||| ||||||||  | |||| ||||||  |   ||||  |||||||||||||||| |||||||||    
T  28326361 tgattttaaccatttgattgcatgtccattatatttaatagtgaaccgtcggcacctaatttttttcatttt--tcatcttctctcttctccttcctcat 28326264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 762 - 863
Target Start/End: Original strand, 30333419 - 30333521
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcct-cacttttcatcatcttctctcttcttcttcc 860  Q
    ||||||||||||| ||| |||||  ||||| |||||| |||||||| ||   |||||| ||||||  | ||| ||||||||| |||||||||||||||||    
T  30333419 atttgattttaacaattagattgcttgtcctttgtatttaacagtgtactgtcagcacctaatttttttcacctttcatcattttctctcttcttcttcc 30333518  T
Q  861 tca 863  Q
    |||    
T  30333519 tca 30333521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 762 - 824
Target Start/End: Complemental strand, 43442734 - 43442672
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataat 824  Q
    ||||||||||||| ||||||||| |||||| |||||| ||||||||||||  |||||| ||||    
T  43442734 atttgattttaacaatttgattgcatgtccgttgtatttaacagtgaaccgtcagcacctaat 43442672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 705
Target Start/End: Original strand, 48312028 - 48312105
Alignment:
Q  628 attaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccct 705  Q
    ||||||| ||||||||||||||||||||  |||| |||||||  |||||| | | ||||||||| ||||||| |||||    
T  48312028 attaatctaatggtccctcaactaattttcagttctcattttgatcccataaatcttaaaatcatcattttgatccct 48312105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 765 - 848
Target Start/End: Complemental strand, 45721737 - 45721653
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatcatcttctc 848  Q
    |||||||||||||||||||| |||| |||||||||||| | ||||||  ||| || ||| |||  |||||||| |||||||||||    
T  45721737 tgattttaaccatttgattgcatgttcattgtatctaataatgaaccgtcagtacctaatttttttcactttttatcatcttctc 45721653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 762 - 859
Target Start/End: Original strand, 666871 - 666968
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatcatcttctctcttcttcttc 859  Q
    |||||||||||||||||| |||| ||||| ||| ||| |  |||||||||  |||||| ||| |||  |||||||||||  ||||||||||||||||||    
T  666871 atttgattttaaccatttaattgcatgtctattatatttc-cagtgaaccgtcagcacttaaattttttcacttttcattgtcttctctcttcttcttc 666968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 740 - 795
Target Start/End: Original strand, 10955968 - 10956023
Alignment:
Q  740 tttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattg 795  Q
    |||||||||||||||       |||||||||||||||||||||||| |||||||||    
T  10955968 tttttaatgtctaaaatttttgatttgattttaaccatttgattgagtgtccattg 10956023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 677
Target Start/End: Complemental strand, 32256499 - 32256458
Alignment:
Q  636 aatggtccctcaactaatttcgagttttcattttagtcccat 677  Q
    ||||||||||||| ||||||| |||||||||||| |||||||    
T  32256499 aatggtccctcaaataatttcaagttttcattttggtcccat 32256458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 831 - 864
Target Start/End: Original strand, 45089669 - 45089702
Alignment:
Q  831 acttttcatcatcttctctcttcttcttcctcat 864  Q
    ||||||| ||||||||||||||||||||||||||    
T  45089669 acttttcttcatcttctctcttcttcttcctcat 45089702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 627 - 863
Target Start/End: Original strand, 6047922 - 6048163
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||||||||| |||||||||||||| | |||||| ||||| ||||||| |||  || ||| | ||||||||||| ||||| ||||||| || | |||    
T  6047922 aattaatcaaatgatccctcaactaattaccagttttaattttggtcccataagtcctataattatcattttggtcc-tcaacttttgctccgtcattca 6048020  T
Q  727 atttggtctc-acc-----tttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcaca 820  Q
    |||||||||| |||     ||||||||| |||||       |||||||| |||||||||||||| | ||||||||||||||| ||||||||| || |||     
T  6048021 atttggtctctaccgtaggtttttaatgcctaaattttttgatttgattctaaccatttgattggaggtccattgtatctaatagtgaaccatcaacacc 6048120  T
Q  821 taatttcctcacttttcatcatcttctctcttcttcttcctca 863  Q
    ||||||  |  |||||| |||||||||||||||||||| ||||    
T  6048121 taatttttttccttttcttcatcttctctcttcttcttgctca 6048163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 765 - 854
Target Start/End: Complemental strand, 26803187 - 26803098
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttct 854  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||  || ||| ||||||  ||||||||||||||||||||||||||    
T  26803187 tgattttaaccatttgattgcatgtccattgtatttaacagtgaaccttcaccacctaattttttcacttttcatcatcttctctcttct 26803098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 627 - 734
Target Start/End: Complemental strand, 6049537 - 6049430
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||||||||||||||||||||||| | |||||| ||||| ||| ||| |||  |||||||| ||||||||||||||||| ||||||  |||| |||    
T  6049537 aattaatcaaatggtccctcaactaattaccagtttttattttggtctcataagtcctaaaatcatcattttggtccctcaacgtttgctacgttattca 6049438  T
Q  727 atttggtc 734  Q
    ||||||||    
T  6049437 atttggtc 6049430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 765 - 854
Target Start/End: Complemental strand, 40110623 - 40110534
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttct 854  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||||  || ||| ||||||  ||||||||||||||||||||||||||    
T  40110623 tgattttaaccatttgattgcatgtccattgtatttaacggtgaaccttcaccacctaattttttcacttttcatcatcttctctcttct 40110534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 627 - 734
Target Start/End: Original strand, 3615250 - 3615357
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||||||||||||||||||||||||   || |||| |||| ||||||| ||| | ||||||| ||||||||||||||||| |||||||  ||| ||     
T  3615250 aattaatcaaatggtccctcaactaattctcagatttcgttttggtcccataagtataaaaatcatcattttggtccctcaacgtttgctccattattcg 3615349  T
Q  727 atttggtc 734  Q
    ||||||||    
T  3615350 atttggtc 3615357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 627 - 734
Target Start/End: Original strand, 52076534 - 52076641
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||||||||| ||||||||||||||   ||||||| |||| ||||||| |||   ||||||| ||||||||||||||||| ||||||| |||| ||     
T  52076534 aattaatcaaatgatccctcaactaattctcagttttcgttttggtcccattagtccaaaaatcatcattttggtccctcaacgtttgctccgttattcg 52076633  T
Q  727 atttggtc 734  Q
    ||||||||    
T  52076634 atttggtc 52076641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 627 - 727
Target Start/End: Complemental strand, 3617610 - 3617510
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||| || ||| ||||||||||||   ||||||| |||| ||||||| ||||| ||||||| ||||||||||||||||| ||||||| |||| |||    
T  3617610 aattaatccaacggttcctcaactaattctcagttttcgttttggtcccataagtttaaaaatcatcattttggtccctcaacgtttgctccgttattca 3617511  T
Q  727 a 727  Q
    |    
T  3617510 a 3617510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 627 - 734
Target Start/End: Complemental strand, 9226328 - 9226221
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||  |||||||||||||||||||   |||||||||||| ||||||| | ||||||||||| || ||||| |||| ||| ||| ||| |||| |||    
T  9226328 aattaattcaatggtccctcaactaattctcagttttcattttggtcccataaattttaaaatcatcaatttggccccttaacttttactccgttattca 9226229  T
Q  727 atttggtc 734  Q
    ||||||||    
T  9226228 atttggtc 9226221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 638 - 734
Target Start/End: Original strand, 5611740 - 5611836
Alignment:
Q  638 tggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtc 734  Q
    |||||| | |||||||||   ||||||||||| ||||||| | || |||||||| ||||||||| ||||||| ||| |||||||||| |||||||||    
T  5611740 tggtcctttaactaatttgttgttttcattttggtcccataatttgtaaaatcaacattttggtgcctcaacttttactctgttagtaaatttggtc 5611836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 765 - 866
Target Start/End: Complemental strand, 40533572 - 40533469
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcct--cacttttcatcatcttctctcttcttcttcctc 862  Q
    |||||||||||||| ||||| ||||||||||||  ||| ||||||||  | |||| ||||||  |  | ||||||||||||||||||||||||||||||     
T  40533572 tgattttaaccattggattgcatgtccattgtaattaatagtgaaccgtcggcacctaatttattttcgcttttcatcatcttctctcttcttcttcctg 40533473  T
Q  863 atat 866  Q
    ||||    
T  40533472 atat 40533469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 659 - 734
Target Start/End: Complemental strand, 26287865 - 26287790
Alignment:
Q  659 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtc 734  Q
    ||||||||||| ||||||| | |  |||||||| ||||||||||||||||| ||| ||| ||||||||||||||||    
T  26287865 gttttcattttggtcccataattcgtaaaatcaacattttggtccctcaacttttactccgttagtcaatttggtc 26287790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 762 - 855
Target Start/End: Complemental strand, 48528868 - 48528773
Alignment:
Q  762 atttgattttaa-ccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatt-tcctcacttttcatcatcttctctcttctt 855  Q
    |||||||||||| ||||| ||||| ||||||||||||| ||| ||||||||  || ||| ||||| |  |||||||||||||||||||||||||||    
T  48528868 atttgattttaaaccattagattgcatgtccattgtatttaatagtgaaccgtcaacacctaattattttcacttttcatcatcttctctcttctt 48528773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 627 - 701
Target Start/End: Original strand, 17190556 - 17190630
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggt 701  Q
    |||||||||||| |||| |||||||||||  ||||||||||||  ||| || ||||||||||||| |||||||||    
T  17190556 aattaatcaaattgtccttcaactaattttcagttttcattttgatcctataagttttaaaatcatcattttggt 17190630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 765 - 811
Target Start/End: Original strand, 24516479 - 24516525
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 811  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||||    
T  24516479 tgattttaaccatttgattgcatgtccattgtatttaacggtgaacc 24516525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 762 - 811
Target Start/End: Original strand, 5611880 - 5611929
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 811  Q
    ||||||||||||||||||||||| ||||||| ||||| | ||||||||||    
T  5611880 atttgattttaaccatttgattgtatgtccaatgtattttacagtgaacc 5611929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 727
Target Start/End: Original strand, 26286426 - 26286515
Alignment:
Q  638 tggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 727  Q
    |||||||  |||||||||   ||||||||||| ||||||| | |  |||||||| ||| ||||||||||||| ||||||| |||||||||    
T  26286426 tggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgttagtcaa 26286515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 708
Target Start/End: Complemental strand, 52078207 - 52078126
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaa 708  Q
    |||||||| ||| |||||||||||||||   | ||||| |||| ||||||| ||||| ||||||| ||||||| ||||||||    
T  52078207 aattaatctaatagtccctcaactaattctcaattttctttttggtcccataagtttaaaaatcatcattttgatccctcaa 52078126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 659 - 727
Target Start/End: Complemental strand, 5613166 - 5613098
Alignment:
Q  659 gttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaa 727  Q
    ||||||||||| ||||||| | |  |||||||| ||| ||||||||||||| ||||||| |||||||||    
T  5613166 gttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgttagtcaa 5613098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 762 - 859
Target Start/End: Complemental strand, 12667246 - 12667148
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa--tttcctcacttttcatcatcttctctcttcttcttc 859  Q
    |||||||||||| |||||||||| ||||| ||||||| |  |||||||||  |||||| |||  |||  |||||||||||  ||||||||||||||||||    
T  12667246 atttgattttaatcatttgattgcatgtctattgtat-ttccagtgaaccgtcagcacttaattttttttcacttttcattgtcttctctcttcttcttc 12667148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 627 - 727
Target Start/End: Original strand, 27556273 - 27556373
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    ||||||| ||||||||||| ||||||||   |||||| ||||| ||||||| ||| ||||||||| || |   |||||||||| ||||||| |||| |||    
T  27556273 aattaattaaatggtcccttaactaattctcagtttttattttggtcccataagtcttaaaatcatcaatcgagtccctcaacttttgctccgttattca 27556372  T
Q  727 a 727  Q
    |    
T  27556373 a 27556373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 863
Target Start/End: Complemental strand, 51446742 - 51446712
Alignment:
Q  833 ttttcatcatcttctctcttcttcttcctca 863  Q
    |||||||||||||||||||||||||||||||    
T  51446742 ttttcatcatcttctctcttcttcttcctca 51446712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 833 - 862
Target Start/End: Complemental strand, 27557591 - 27557562
Alignment:
Q  833 ttttcatcatcttctctcttcttcttcctc 862  Q
    ||||||||||||||||||||||||||||||    
T  27557591 ttttcatcatcttctctcttcttcttcctc 27557562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 650 - 859
Target Start/End: Complemental strand, 10737028 - 10736811
Alignment:
Q  650 taatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtctc-------accttt 742  Q
    |||||||  ||||||||||| ||||||| | |  |||||||| ||||||||||||||    ||||||| |||| ||||||||||| |       | ||||    
T  10737028 taatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaatcaatttggtcccctccgttaacttt 10736929  T
Q  743 ttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatca 841  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||  || ||| ||| |||  ||||||| |||||    
T  10736928 ttaatgtctaaaatttttgatttgattttaaccatttgattgaatgtccattgtatctaatagtgaaccgtcaacacttaatttttttcactttccatca 10736829  T
Q  842 tcttctctcttcttcttc 859  Q
    ||||||||||||||||||    
T  10736828 tcttctctcttcttcttc 10736811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 627 - 727
Target Start/End: Complemental strand, 9220573 - 9220473
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||  ||||||||||||||||||||| ||||||||||||  |||||| ||| || ||||||| |||||||||||||||| |||||||||||| |||    
T  9220573 aattaattcaatggtccctcaactaatttccagttttcattttgttcccataagtcttgaaatcagaattttggtccctcaacttttgctctgttattca 9220474  T
Q  727 a 727  Q
    |    
T  9220473 a 9220473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 829 - 864
Target Start/End: Complemental strand, 224493 - 224458
Alignment:
Q  829 tcacttttcatcatcttctctcttcttcttcctcat 864  Q
    ||||||||||||||||||||||||||||||||||||    
T  224493 tcacttttcatcatcttctctcttcttcttcctcat 224458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 829 - 866
Target Start/End: Original strand, 5975965 - 5976002
Alignment:
Q  829 tcacttttcatcatcttctctcttcttcttcctcatat 866  Q
    |||||||||||||||||||||||||| |||||||||||    
T  5975965 tcacttttcatcatcttctctcttctccttcctcatat 5976002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 762 - 853
Target Start/End: Original strand, 4124902 - 4124995
Alignment:
Q  762 atttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatt--tcctcacttttcatcatcttctctcttc 853  Q
    |||| |||||||||||||||||| || |||||||||| ||| ||||||||  |||||| | |||  |  ||| |||||||||||||||| ||||    
T  4124902 atttaattttaaccatttgattgtatatccattgtatttaatagtgaaccgtcagcacctgattaattttcatttttcatcatcttctcccttc 4124995  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 765 - 839
Target Start/End: Complemental strand, 8188171 - 8188098
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcat 839  Q
    |||||||||||||||||||| ||||||||| ||| |||  |||||||| || ||| ||||||  |||||||||||    
T  8188171 tgattttaaccatttgattgcatgtccattatatttaatggtgaaccatcaacacctaattt-ttcacttttcat 8188098  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 740 - 811
Target Start/End: Original strand, 9219299 - 9219370
Alignment:
Q  740 tttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaacc 811  Q
    |||||||||||||||       |||||||||||||| |||||||| |||| |||||||| ||| ||||||||    
T  9219299 tttttaatgtctaaaattttttatttgattttaaccgtttgattgcatgttcattgtatttaatagtgaacc 9219370  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 851
Target Start/End: Complemental strand, 9170858 - 9170774
Alignment:
Q  767 attttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataa-tttcctcacttttcatcatcttctctct 851  Q
    |||||||||||||||||| ||||||||| ||||| |  || ||||| |||||| ||| |||  |||||||||||||||||| ||||    
T  9170858 attttaaccatttgattgcatgtccattatatct-atggtaaaccatcagcacttaatttttttcacttttcatcatcttccctct 9170774  T

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Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 627 - 727
Target Start/End: Complemental strand, 23233809 - 23233709
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||||||||||||||||||||||| | | |||||||||| ||||||| ||| ||||||||| ||||||||||||||||| ||||||| |||| |||    
T  23233809 aattaatcaaatggtccctcaactaattacaaattttcattttggtcccataagtcttaaaatcatcattttggtccctcaacttttgctccgttattca 23233710  T
Q  727 a 727  Q
    |    
T  23233709 a 23233709  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 627 - 709
Target Start/End: Original strand, 23231543 - 23231625
Alignment:
Q  627 aattaatcaaatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaac 709  Q
    |||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||| ||||||||| |||||||||||||||||    
T  23231543 aattaatcaaatggtccctcaactaattacgagtttttattttggtcccataagtcttaaaatcatcattttggtccctcaac 23231625  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 765 - 863
Target Start/End: Original strand, 4919975 - 4920074
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcc--tcacttttcatcatcttctctcttcttcttcctc 862  Q
    ||||||||||| |||||||| ||||||||| || |||  ||||||||| |||||  ||||||    ||| ||||||||||||||||||||||||||||||    
T  4919975 tgattttaaccgtttgattgcatgtccattatacctat-agtgaaccatcagcatctaatttttgttcatttttcatcatcttctctcttcttcttcctc 4920073  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 767 - 866
Target Start/End: Original strand, 19397680 - 19397780
Alignment:
Q  767 attttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcct-cacttttcatcatcttctctcttcttcttcctcata 865  Q
    |||||||||||| ||||| ||||||||||||  ||| |||||||   |  ||| ||||||  | | ||||||||||||||||||||||||||||||||||    
T  19397680 attttaaccattggattgcatgtccattgtaattaatagtgaactgtcgacacctaatttttttcgcttttcatcatcttctctcttcttcttcctcata 19397779  T
Q  866 t 866  Q
    |    
T  19397780 t 19397780  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 863
Target Start/End: Original strand, 45699746 - 45699776
Alignment:
Q  833 ttttcatcatcttctctcttcttcttcctca 863  Q
    |||||||||||||||||||||||||||||||    
T  45699746 ttttcatcatcttctctcttcttcttcctca 45699776  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 765 - 814
Target Start/End: Complemental strand, 42368279 - 42368230
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccacc 814  Q
    ||||||||||| |||||||| | ||||| ||||| |||||||||||||||    
T  42368279 tgattttaaccgtttgattgtaagtccactgtatataacagtgaaccacc 42368230  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 636 - 826
Target Start/End: Complemental strand, 18242414 - 18242217
Alignment:
Q  636 aatggtccctcaactaatttcgagttttcattttagtcccatgagttttaaaatcagcattttggtccctcaacatttgctctgttagtcaatttggtc- 734  Q
    ||||||||||||||||||||  | |||| ||| | ||||||| ||| ||||||||| || |||||||||||||| |||||||  ||| ||||||| |||     
T  18242414 aatggtccctcaactaatttttaatttttattctggtcccataagtcttaaaatcatcaatttggtccctcaacttttgctccattattcaatttcgtcc 18242315  T
Q  735 ------tcacctttttaatgtctaaannnnnnnatttgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataattt 826  Q
          | |  |||||||||||| ||       |||| |||||||||||||||||| ||||||||||||| | | ||||||||| || ||| ||||||    
T  18242314 cctccgttagttttttaatgtcttaaatttttaatttaattttaaccatttgattgcatgtccattgtattttatagtgaaccatcatcacctaattt 18242217  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 643 - 726
Target Start/End: Original strand, 18240418 - 18240502
Alignment:
Q  643 cctcaactaatttcgagttttcattttagtcccatgagttttaaaa-tcagcattttggtccctcaacatttgctctgttagtca 726  Q
    |||||||||||||  ||||||||||||  ||||||  || |||||| ||| || |||||||||||||| ||||||||||||||||    
T  18240418 cctcaactaattttcagttttcattttgatcccatatgtcttaaaaatcatcaatttggtccctcaacttttgctctgttagtca 18240502  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 765 - 826
Target Start/End: Original strand, 29675622 - 29675683
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataattt 826  Q
    |||||||||||| | ||||| | ||||||||||||||| |||| |||| || ||||||||||    
T  29675622 tgattttaaccactggattgcaggtccattgtatctaatagtgcaccatcaccacataattt 29675683  T

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Target: scaffold0219 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 767 - 856
Target Start/End: Original strand, 7044 - 7133
Alignment:
Q  767 attttaaccatttgattgaatgtccattgtatctaacagtgaaccaccagcacataatttcctcacttttcatcatcttctctcttcttc 856  Q
    ||||||||| |||||||| ||||||||| ||| ||| ||||||||  || ||| ||||||  || |||||||||||||||| ||||||||    
T  7044 attttaaccgtttgattgcatgtccattatatttaatagtgaaccgtcaacacctaattttttcgcttttcatcatcttctatcttcttc 7133  T

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Target: scaffold0687 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 765 - 802
Target Start/End: Complemental strand, 6534 - 6497
Alignment:
Q  765 tgattttaaccatttgattgaatgtccattgtatctaa 802  Q
    |||||||||||||||||||  |||||||||||||||||    
T  6534 tgattttaaccatttgattctatgtccattgtatctaa 6497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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