View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5548-Insertion-4 (Length: 860)

Name: NF5548-Insertion-4
Description: NF5548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5548-Insertion-4
NF5548-Insertion-4
[»] chr2 (1 HSPs)
chr2 (53-783)||(31906044-31906772)


Alignment Details
Target: chr2 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 53 - 783
Target Start/End: Original strand, 31906044 - 31906772
Alignment:
Q  53 aatgaccctgataatttaatttcctttattttgaatggatataatacataaactagacaaatttgatgtaatacatgttcatttgatgtagctagtgtta 152  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  31906044 aatgaccccgataatttaatttcctttattttgaatggatataatacatatactagacaaattgtatgtaatacatgttcatttgatgtagctagtgtta 31906143  T
Q  153 taaattggtttgctattcaaccaaaaataaattagccaaaatggtcatttacaacatcagatgaattgttctgtaaatatttttcagcaattggaaacta 252  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31906144 taaattggtttgctattcaaccaaaaataaattaaccaaaatggtcatttacaacattagatgaattgttctgtaaatatttttcagcaattggaaacta 31906243  T
Q  253 gttttacaatcatgagtgactcgtttgtattttcttttgtatccattcatttcttttattgaaaaatgaaaggtgaaagaagagaatgcaataacggagg 352  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31906244 gttttacaatcatgagtgactcgattgtattttcttttgtatccattcatttcttttattgaaaaatgaaaggtgaaagaagagaatgcaataacggagg 31906343  T
Q  353 agctatcagagtggcaggacagtgcaagcgatatgatgggttcagaagctgatatcaacgacaagatcgaacggctggtaagtattatcaagaaagctga 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31906344 agctatcagagtggcaggacagtgcaagcgatatgatgggttcagaagctgatatcaacgacaagatcgaacggctggtaagtattatcaagaaagctga 31906443  T
Q  453 tgatctacggctgagaacgttgcgcaatgtggtggagttcctgtcgccgcagcaggctattgagttcttgattgcttcagctgagttggttgttgggata 552  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31906444 tgatctacggctgagaacgttgcgcagtgtggtggagttcctgtcgccgcagcaggctgttgagttcttgattgcttcagctgagttggttgttgggata 31906543  T
Q  553 cggggttggggattgaatcatgaccgttcacgtcctaggatacgatgaatcctaggatgtgatgaactcttgtttttatgggttgaaaaatttgcctctt 652  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  31906544 cggggttggggattgaatcacgaccgttcacgtcctaggatacgatgaatcctaggatgtgatgaactcttg-ttttatgggttgaaaaatttgtctctt 31906642  T
Q  653 aattttggaatgttatgagatttattcaaatcatcgtcaaatgagtactgttgctagtttgtcattttattttctatttgcaatgtaaaactaaattaag 752  Q
    |||||| || | |||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31906643 aatttt-gatttttatgagatttatttaaatcattgtcaaatgagtactgttgctactttgtcattttattttctatttgcaatgtaaaactaaattaag 31906741  T
Q  753 tacttcaatgaattattatttttcaactaat 783  Q
    ||||| |||||||| ||||||||||||||||    
T  31906742 tactttaatgaattgttatttttcaactaat 31906772  T

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