View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5548-Insertion-5 (Length: 836)
Name: NF5548-Insertion-5
Description: NF5548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5548-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 747; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 747; E-Value: 0
Query Start/End: Original strand, 7 - 833
Target Start/End: Complemental strand, 21744452 - 21743628
Alignment:
| Q |
7 |
acaaacaactacacaaatcaataaggtactaaaactataattaataaacactaagaaatgttagacaagtaagaataaggatctagcatatttcatcttt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21744452 |
acaaacaactacacaaatcaataaggtactaaaactataattaataaacactaagaaatgtaagacaagtaagaataaggatctagcatatttcatcttt |
21744353 |
T |
|
| Q |
107 |
gccttgaatttgaagcatgaaatatatcatctttacaaccctgcatagcccttttgaactagcagccttaacaagtaaagaactaaaccttttttccatc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21744352 |
gccttgaatttgaagcatgaaatatatcatctttacaaccctgcatagcccttttgaactagcagccttaacaagtaaagaactaaaccttttttccatc |
21744253 |
T |
|
| Q |
207 |
acttcaagtatatagttatatatatacaagtcataagaaccctaatttacacacaacatttgtatcctagttctgtgtttaaggcttttttctttaaaac |
306 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21744252 |
acttcaagtatatacttatatatatacaagtcataagaaccctaatttacacacaacatttgtatcctagttctgtgtttgaggcttttttctttaaaac |
21744153 |
T |
|
| Q |
307 |
ttgttgtccttctgaaattcccttcccttagctttttattgtttgatccaaaactacaaaacttataaatggcaaatgagcaaatgaagccaattgctac |
406 |
Q |
| |
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|| |||||||||||||||||||||||||| ||||||| ||||||| ||||| || ||| |||||| | |||||||||||||||||||||||||||||||| |
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| T |
21744152 |
tttttgtccttctgaaattcccttccctt-gcttttt-ttgtttgttccaataccacacaacttagatatggcaaatgagcaaatgaagccaattgctac |
21744055 |
T |
|
| Q |
407 |
tcttcttttggcactgaatttttgcatgtatgtcattgttataagcattggtggatgggccatgaatagagcaattgatcatggttttgaaataggtgag |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21744054 |
tcttcttttggcactgaatttttgcatgtatgtcattgttataagcattggtggatgggccatgaatagagcaattgatcatggttttgaaataggtcag |
21743955 |
T |
|
| Q |
507 |
actttcttcgatcttttcgttttgtttcacggtagcgagaactaaaagtgatttcagacacataaaattgattttgatatttgagtgatgtcgactagaa |
606 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21743954 |
actttcttcgatcttttcgttttgtttcatggtagcgagaactaaaagtgatttcagacacataaaattgattttgatatttgagtgatgttgactagaa |
21743855 |
T |
|
| Q |
607 |
ttgattttgcctttagacttgattcttagttgaagctagaatttgcaactttctgcatccaaacgtgatttcttcgctcaaatttatttttcaactcatt |
706 |
Q |
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| T |
21743854 |
ttgattttgcctttagacttgattcttagttgaagctagaatttgcaactttctgaatccaaacgtgatttcttcgctcaaatttatttttcaactcatt |
21743755 |
T |
|
| Q |
707 |
tttaacgagaatcaatttttgttgcagaaccatacacacttagaacaaagcaacatcttgtaaatttacttattcagcttggttatgtttgcaggtccag |
806 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21743754 |
tttaacgagaatcaatttttattgcagaaccttacacacttagaacaaagcaacatcttgtaaatttacttattcagcttggttatgtttgcaggtccag |
21743655 |
T |
|
| Q |
807 |
gatttgatcttcctgctcatttttcac |
833 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
21743654 |
gatttgatcttcctgctcatttttcac |
21743628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 647
Target Start/End: Complemental strand, 10619047 - 10619005
Alignment:
| Q |
604 |
gaattgattttgcctttagacttgattcttagttgaagctagaa |
647 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
10619047 |
gaattgattttgcctttagaattgattc-tagttgaagctagaa |
10619005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 494
Target Start/End: Original strand, 24750529 - 24750597
Alignment:
| Q |
426 |
ttttgcatgtatgtcattgttataagcattggtggatgggccatgaatagagcaattgatcatggtttt |
494 |
Q |
| |
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||||||||||||||||| |||||| ||||||||| |||||| |||||||||||||| |||||||||||| |
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| T |
24750529 |
ttttgcatgtatgtcatagttataggcattggtgcatgggctatgaatagagcaatagatcatggtttt |
24750597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 555 - 596
Target Start/End: Original strand, 43561124 - 43561167
Alignment:
| Q |
555 |
tgatttcagacacataaaattgattttg--atatttgagtgatg |
596 |
Q |
| |
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| T |
43561124 |
tgatttcagacacataaaattgattttgacatatttgagtgatg |
43561167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 544 - 582
Target Start/End: Complemental strand, 28305025 - 28304987
Alignment:
| Q |
544 |
agaactaaaagtgatttcagacacataaaattgattttg |
582 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| |
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| T |
28305025 |
agaactaaaagtgattccaaacacataaaattgattttg |
28304987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 651
Target Start/End: Original strand, 7667586 - 7667635
Alignment:
| Q |
602 |
tagaattgattttgcctttagacttgattcttagttgaagctagaatttg |
651 |
Q |
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||||||||| |||||||| ||| |||||||| | |||||||||||||||| |
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| T |
7667586 |
tagaattgactttgccttcagaattgattctaacttgaagctagaatttg |
7667635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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