View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5548-Insertion-6 (Length: 611)
Name: NF5548-Insertion-6
Description: NF5548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5548-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 8 - 607
Target Start/End: Original strand, 32632024 - 32632628
Alignment:
| Q |
8 |
ggggacctgtgttattgttggcaagcaaagcttacgaaatgactcacattcttctgatacctcaagttcatcaacaggaagaataaaacaagttttgact |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
32632024 |
ggggacctgtgttattgttggcaagcaaagcttacgaaatgactctcattcttctgatacctcaaattcatcaacaggaagaataaaacaagctttgact |
32632123 |
T |
|
| Q |
108 |
ggtttgctcttgattctatctatctgtttaaatcccttaatagttaaaa-aatcacatgtttatatttatgcactaatcatatcttactatgtaaatatg |
206 |
Q |
| |
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|||||||| |||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32632124 |
ggtttgcttttgattctatctctttgtttaaatcccttaatagttaaaaaaatcacatgtttatatttatgcactaatcatatcttactatgtaaatatg |
32632223 |
T |
|
| Q |
207 |
tcataatattattttctagagtttaatttttatatactcaaacgtaaaattttacactatcaacaaatcacatatttgactatagaagtagttatgatta |
306 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
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| T |
32632224 |
tcataatattattttctagagtttaacttttatatactcaaacataaaattttacactatcaacaaatcacatatttgactttagaagttgttacgatta |
32632323 |
T |
|
| Q |
307 |
aagtcaaacgttttaatatatgacaactatgatttattgaaagtgtgaaaaatctttatcttgttgatgatgt-----acctaaatcatatttcgaacat |
401 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
32632324 |
aaatcaaacgttttaatatatgacaactatgatttattgaaagtgtgaaaaatctttatcttgttgatgatgtatatgaactaaatcatatttcgaacac |
32632423 |
T |
|
| Q |
402 |
gatgtatatgtaaaacaatattacatgcattctcgaaacaaacatatgcatttcatacttgaagtttcaaattcttcaattaggattacctagactcctt |
501 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32632424 |
gacgtatgtgtaaaacaatattacatgcattctcgaaacaaacatatgcatttcatacttgaagtttcaaattcttcaattaggaacacctagactcctt |
32632523 |
T |
|
| Q |
502 |
tttacttgtttgatttgaatcattaatgtgtacnnnnnnnattggatttatcataggttatggtattactatggatgtagacactagaaagatggcaaga |
601 |
Q |
| |
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|| | ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32632524 |
ttaagttgtttgatgtgaatcattaatgtgtac-ttttttattgaatttatcataggttatggtattactatggatgtagacactagaaagatggcaaga |
32632622 |
T |
|
| Q |
602 |
attatg |
607 |
Q |
| |
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|||||| |
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| T |
32632623 |
attatg |
32632628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 32613347 - 32613467
Alignment:
| Q |
8 |
ggggacctgtgttattgttggcaagcaaagcttacgaaatgactcacattcttctgatacctcaagttcatcaacaggaagaataaaacaagttttgact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| || |||||| |||||||||||||||| ||||||| |
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| T |
32613347 |
ggggacctgtgttattgttggcaagcaaagttttaaaaatgactctcattcttctgatacctcatatttatcaaccggaagaataaaacaagctttgact |
32613446 |
T |
|
| Q |
108 |
ggtttgctcttgattctatct |
128 |
Q |
| |
|
||||||||||| ||||||||| |
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|
| T |
32613447 |
ggtttgctcttaattctatct |
32613467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 447 - 611
Target Start/End: Original strand, 32613783 - 32613945
Alignment:
| Q |
447 |
atgcatttcatacttgaagtttcaaattcttcaattaggattacctagactcctttttacttgtttgatttgaatcattaatgtgtacnnnnnnnattgg |
546 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||| |||||| |||||||| || || ||| |||||||| |||||||||| || |
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| T |
32613783 |
atgcatttcatacatgaagttttaaattcttcaattagaattaccataactcctttatagtttttt-atttgaattcttaatgtgtaatattttt-ttat |
32613880 |
T |
|
| Q |
547 |
atttatcataggttatggtattactatggatgtagacactagaaagatggcaagaattatggttt |
611 |
Q |
| |
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|||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||| |
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|
| T |
32613881 |
atttatgataggttatggcattactatggatatagacactagaaagatggcgagaatcatggttt |
32613945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 32613520 - 32613612
Alignment:
| Q |
189 |
tcttactatgtaaatatgtcataatat--tattttctagagtttaatttttatatac-tcaaacgtaaaattttacactatcaacaaatcaca |
278 |
Q |
| |
|
|||||||||||||||||||||||| || | |||| ||||||| |||||||||| || ||||| ||| ||||||| ||||| ||||||||||| |
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|
| T |
32613520 |
tcttactatgtaaatatgtcataacattcttttttttagagttcaatttttatacacatcaaatgtagaattttatactataaacaaatcaca |
32613612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 16962242 - 16962160
Alignment:
| Q |
284 |
gactatagaagtagttatgattaaagtcaaacgttttaat-atatgacaactatgatttattgaaagtgtgaaaaatctttat |
365 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| || | |||||||||||| || || ||||| ||||| |||||| |
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| T |
16962242 |
gactttagaaatagttatgattaaagtcaaacgttttaatgatctaacaactatgattgatcgacagtgtaaaaaaactttat |
16962160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 16230766 - 16230821
Alignment:
| Q |
267 |
caacaaatcacatatttgactatagaagtagttatgattaaagtcaaacgttttaa |
322 |
Q |
| |
|
|||| ||||| || ||||| | ||||||||||||||||||||||||||| |||||| |
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|
| T |
16230766 |
caaccaatcatatgtttgattttagaagtagttatgattaaagtcaaacattttaa |
16230821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 32408129 - 32408099
Alignment:
| Q |
289 |
tagaagtagttatgattaaagtcaaacgttt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
32408129 |
tagaagtagttatgattaaagtcaaacgttt |
32408099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 26762916 - 26762879
Alignment:
| Q |
283 |
tgactatagaagtagttatgattaaagtcaaacgtttt |
320 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
26762916 |
tgactttagaagtaattatgattaaagtcaaacgtttt |
26762879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 30011769 - 30011846
Alignment:
| Q |
289 |
tagaagtagttatgattaaagtcaaac-gttttaat-atatgacaactatgatttattgaaagtgtgaaaaatcttta |
364 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| |||||||| ||||||| ||||| ||||| |||||| |||| |
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| T |
30011769 |
tagaagtagttatgattgaagtcaaacatttttaatgttatgacaagtatgattgattgacagtgtaaaaaatgttta |
30011846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 39560344 - 39560381
Alignment:
| Q |
283 |
tgactatagaagtagttatgattaaagtcaaacgtttt |
320 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
39560344 |
tgactttagaagtagttatgattaaagtcaaacatttt |
39560381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 31650352 - 31650315
Alignment:
| Q |
283 |
tgactatagaagtagttatgattaaagtcaaacgtttt |
320 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
31650352 |
tgactttagaagtagttatgattaaagtcaaacatttt |
31650315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 5376356 - 5376320
Alignment:
| Q |
284 |
gactatagaagtagttatgattaaagtcaaacgtttt |
320 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
5376356 |
gactttagaagtagttatgattacagtcaaacgtttt |
5376320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 35170022 - 35169990
Alignment:
| Q |
283 |
tgactatagaagtagttatgattaaagtcaaac |
315 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
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|
| T |
35170022 |
tgactttagaagtagttatgattaaagtcaaac |
35169990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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