View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5548-Insertion-7 (Length: 610)
Name: NF5548-Insertion-7
Description: NF5548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5548-Insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 7 - 474
Target Start/End: Complemental strand, 32680105 - 32679640
Alignment:
| Q |
7 |
atttataccaaaatattaagactttttattgtagccctctgtgcttttttggcttgttgatatcatgtttcgacctgctgttacttggttgtattagttt |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32680105 |
atttataccaaaatattaagactttttattgtagccctctgtgcttttttggcttgttgatatcatgtttcgacctactgttacttggttgtattagttt |
32680006 |
T |
|
| Q |
107 |
tttagtgtgaactgccagaatgggaatgttgaagattaaacatgcgtgttttgtatgtgtgtgtttaacagcgagagtttgtatgaagatgaggagtttg |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
32680005 |
tttagtgtgaactgccagaatgggaatgttgaagattaaacatgcgtgttttgtatgtgtgt--ttaacagcgagagtttgtatgaagacgaggagtttg |
32679908 |
T |
|
| Q |
207 |
atcattaccaaaggcaactcgctgcactacttgtatagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679907 |
atcattaccaaaggcaactcgctgcactacttgtatataaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatg |
32679808 |
T |
|
| Q |
307 |
ctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttca |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32679807 |
ctatttttgcatatatggagtctctttcttcatgtagctaagctgttaggatgtgttttacatgatatttaagataacaaacaagtattgttggttttca |
32679708 |
T |
|
| Q |
407 |
tcctttgtgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct |
474 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679707 |
tcctttatgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct |
32679640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 401 - 448
Target Start/End: Complemental strand, 32679676 - 32679630
Alignment:
| Q |
401 |
ttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctt |
448 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
32679676 |
ttttcatcctttatgg-ttgtacctgacttctaaaccttttcatcctt |
32679630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 142 - 412
Target Start/End: Complemental strand, 28136291 - 28136025
Alignment:
| Q |
142 |
ttaaacatgcgtgttttgtatgtgtgtgtttaacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgta |
241 |
Q |
| |
|
||||||||| ||| ||||||||| |||||| || || ||||||||||| ||||| |||| |||||||| ||||||||||||| || |||||||| ||| |
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| T |
28136291 |
ttaaacatgtgtggtttgtatgtatgtgttaaatagtgagagtttgtacgaagaggaggcctttgatcagcaccaaaggcaacttgccgcactactcgta |
28136192 |
T |
|
| Q |
242 |
tagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgct-atttttgcatatatggagtctctttcttcatg |
340 |
Q |
| |
|
| |||||| ||| ||| |||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28136191 |
tccaaggtagtattgttctgctcattatttgaactgtcacatgttctattggtgactatgcgatgctgttttttgcatatatggagtctctttcttcatg |
28136092 |
T |
|
| Q |
341 |
tagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatccttt |
412 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
28136091 |
t-----agctgttatgatgtgttttacatgatatttgagataacaaataagtattgttggctttcatccttt |
28136025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 610
Target Start/End: Complemental strand, 28135930 - 28135840
Alignment:
| Q |
521 |
tggtttgtgttttggc-atctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgc |
610 |
Q |
| |
|
||||||||||||| | |||| ||||| ||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||| |||||||||| |
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| T |
28135930 |
tggtttgtgtttttactatctaattttttttcgctcctttatcttaggtattttattacttgggtgagctgaatgactcactatcctatgc |
28135840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 519
Target Start/End: Complemental strand, 28136035 - 28135955
Alignment:
| Q |
439 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
519 |
Q |
| |
|
||||||||||| | ||||||| | |||||||||| |||||| ||| ||||| |||||||||||||| |||||||||||| |
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| T |
28136035 |
tttcatccttttttattgtacccggcttctaaaccaatcaccagagtccttatgttttttcatatccctatattattattc |
28135955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 173 - 384
Target Start/End: Original strand, 44806585 - 44806795
Alignment:
| Q |
173 |
aacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatagaaggtattataattccgctcattatttg |
272 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| | ||||||||||| || ||| ||||||||| |||||| | || ||| |||||||||||| |
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|
| T |
44806585 |
aacagtgagagtttgtacgaagatgaggagtttgatcagcatcaaaggcaacttgccgcattacttgtatcaaaggtagtgta-ttctgctcattatttg |
44806683 |
T |
|
| Q |
273 |
aactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgat |
372 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
44806684 |
aattgtcacatgttctattgataactgtgcgatgctgtttttgcacatacggagtctctttcgtcaagtagctaagctgttatgatgtgttttacatgat |
44806783 |
T |
|
| Q |
373 |
atttgagataac |
384 |
Q |
| |
|
|||||||||||| |
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|
| T |
44806784 |
atttgagataac |
44806795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 521 - 610
Target Start/End: Original strand, 44806913 - 44807002
Alignment:
| Q |
521 |
tggtttgtgttttggcatctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgc |
610 |
Q |
| |
|
|||||||| |||| | |||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||| |
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| T |
44806913 |
tggtttgtattttagtatctgatttttcttcgctcctttatcttaggtcttttattacttgggcgagttgaatgactcactatcctatgc |
44807002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 44806806 - 44806873
Alignment:
| Q |
439 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatcca |
506 |
Q |
| |
|
|||||| |||| || ||||||| | |||||||||| |||||| |||| |||||||||||||||||||| |
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|
| T |
44806806 |
tttcattctttttgattgtacccggcttctaaaccaatcaccagaggacttaagttttttcatatcca |
44806873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 9e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 271 - 437
Target Start/End: Original strand, 2230444 - 2230609
Alignment:
| Q |
271 |
tgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatg |
370 |
Q |
| |
|
|||||||||| ||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
2230444 |
tgaactgtcacatgttctattgataaccgagcgatgctgtttttgcatatatggagtctctttcttcatgtggctaagctgttatgatgtgttttacatg |
2230543 |
T |
|
| Q |
371 |
atatttgagataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaacc |
437 |
Q |
| |
|
|||||||||||| |||| || |||| | || |||||||||| | | ||||||||| |||||||||| |
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|
| T |
2230544 |
atatttgagatagcaaataaatattttcggccttcatccttt-ttgattgtacctggcttctaaacc |
2230609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 440 - 519
Target Start/End: Original strand, 2230576 - 2230655
Alignment:
| Q |
440 |
ttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
519 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
2230576 |
ttcatcctttttgattgtacctggcttctaaaccaatcaccagaggccttaagtttttttatatccatatattattattc |
2230655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 543 - 610
Target Start/End: Original strand, 2230704 - 2230771
Alignment:
| Q |
543 |
ttttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgc |
610 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||| |
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|
| T |
2230704 |
ttttttttcgctcctttatcttaggtctttaattacttgggcgagctgaatgactcactatcctatgc |
2230771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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