View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5548-Insertion-9 (Length: 187)
Name: NF5548-Insertion-9
Description: NF5548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5548-Insertion-9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 53615620 - 53615800
Alignment:
| Q |
7 |
ccaataacctgttttatgatgaaattcattcaaaaattaatactagtgagtgagaaagggattgtgaatcttcaagactcacaagaattccaacaccagc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53615620 |
ccaataacctgttttatgatgaaattcattcaaaaattaatactagtgagtgagaaagggattgtgaatcttcaagactcacaagaattccaacaccagc |
53615719 |
T |
|
| Q |
107 |
aggtataatatacctcatgaattctaactatatttggatgatgtagaagtttcattgttctaatctcactttgtacctgaa |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53615720 |
aggtataatatacctcatgaattctaactatatttggatgatgtagaagtttcattgttctaatctcactttgtacctgaa |
53615800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 187
Target Start/End: Original strand, 17923526 - 17923555
Alignment:
| Q |
158 |
tcattgttctaatctcactttgtacctgaa |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17923526 |
tcattgttctaatctcactttgtacctgaa |
17923555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University