View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5548_high_5 (Length: 254)
Name: NF5548_high_5
Description: NF5548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5548_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 1248042 - 1247824
Alignment:
| Q |
18 |
tgactaagtataaaatagtcattcgtgaaattttcggtattgttatctctcgccataactagcaatttcctttgatgatacaaatctattagtattgcaa |
117 |
Q |
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| T |
1248042 |
tgactaagtataaaatagtcattcgtgaaattttcggtattgttatctctcgccataactagcaatttcctttgatgatacaaatctattagtattgcaa |
1247943 |
T |
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| Q |
118 |
cattatttatttcatttttcatcatcttatttatttggaaggcatgattgattaatttctattgatagaataaagaaaaggctgaagtgaagggtgaagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1247942 |
cattatttatttcatttttcatcatcttatttatttggaaggcatgattgattaatttctattgatagaataaagaaaaggctgaagtgaagggtgaagc |
1247843 |
T |
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| Q |
218 |
caatgaggaagcagccacc |
236 |
Q |
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||||||||||||||||||| |
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| T |
1247842 |
caatgaggaagcagccacc |
1247824 |
T |
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