View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5548_high_7 (Length: 243)
Name: NF5548_high_7
Description: NF5548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5548_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 11390021 - 11390225
Alignment:
| Q |
19 |
atatcattcgaatgtggttaaatatttagataacaacaaaataaaataaaagacaaattttgttacaaaaatacattattataggtaacaaacttgggtt |
118 |
Q |
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| T |
11390021 |
atatcattcgactgtggttaaatatttagataacaacaaaataaaataaaagacaaattttgttacaaaaatacattattataggtaacaaacttgggtt |
11390120 |
T |
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| Q |
119 |
ggagataaatacaaattcttggagtatttcttaggggtttctctattctgattataaatacacattcttattctccctttgattaccaaaaaacgatgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11390121 |
ggagataaatacaaattcttggagtatttcttaggggtttctctattctgattataaacacacatttttattctccctttgattaccaaaaaacgatgtt |
11390220 |
T |
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| Q |
219 |
tacac |
223 |
Q |
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||||| |
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| T |
11390221 |
tacac |
11390225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 11420603 - 11420399
Alignment:
| Q |
19 |
atatcattcgaatgtggttaaatatttagataacaacaaaataaaataaaagacaaattttgttacaaaaatacattattataggtaacaaacttgggtt |
118 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11420603 |
atatcattcgattgttgttaaatatttagataacaacaaaataaaataaaagacaaattttgttacaaaaatacattattataggtaacaaacttgtgtt |
11420504 |
T |
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| Q |
119 |
ggagataaatacaaattcttggagtatttcttaggggtttctctattctgattataaatacacattcttattctccctttgattaccaaaaaacgatgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11420503 |
ggagataaatacaaattcttggagtatttcttaggggtttttctattctgattataaatacacatttttattctccctttgattaccaaaaaacgatgtt |
11420404 |
T |
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| Q |
219 |
tacac |
223 |
Q |
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||||| |
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| T |
11420403 |
tacac |
11420399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 11389594 - 11389667
Alignment:
| Q |
17 |
aaatatcattcgaatgtggttaaatatttagataacaacaaaataaaataa--aagacaaattttgttacaaaa |
88 |
Q |
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||||||||||| | |||| ||||||||||| |||||||||||||||| ||| || ||||||| |||||||||| |
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| T |
11389594 |
aaatatcattcaattgtgtttaaatatttacataacaacaaaataaagtaaacaaaacaaattgtgttacaaaa |
11389667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 11421178 - 11421101
Alignment:
| Q |
37 |
taaatatttagataacaacaaaataaaataaa-----agacaaattttgttacaaaaatacattattataggtaacaaa |
110 |
Q |
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||||||||||||||||| |||||||||||||| | ||||||||||||| ||||| ||||||||||| |||||||| |
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| T |
11421178 |
taaatatttagataacatcaaaataaaataaaaaaacaaacaaattttgtta-aaaaaaacattattataagtaacaaa |
11421101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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