View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5548_low_3 (Length: 290)
Name: NF5548_low_3
Description: NF5548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5548_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 33700877 - 33701162
Alignment:
| Q |
11 |
cataggcaaaaagtctcaagcaaaagacaacaagagcgtggcttaaacacgacaccgacacatgtatttacattcatgtttgtgtgtctaatgtctatgt |
110 |
Q |
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| T |
33700877 |
cataggcaaaaactctcaagcaaaagacaacaagaacgtggcttaaacacgacactgacacatgtgtttacattcatgtttgtgtgt---gtctccatgt |
33700973 |
T |
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| Q |
111 |
tcgtatctcatagacaatatctccttagaaggaatgagaccttgttaaatttatttttcaacccnnnnnnnnnnnnnng---------ttttgcttaaat |
201 |
Q |
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| T |
33700974 |
tcgtatctcatagacaatatctccttagaaggaatgagaccttgttaaatttatttttcaacccaaaaaaaaaaaacagaaaaaatagttttgcttaaat |
33701073 |
T |
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| Q |
202 |
agtcatgcatgactatataagcaacttattaaacattcaacgtttcattttctctatatttcttccttcatgtcacattataccaacct |
290 |
Q |
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| T |
33701074 |
agtcatgcatgactatataagcaacctattaaacattcaacgtttcattttatctatatttcttccttcatgtcacattataccaacct |
33701162 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 23851529 - 23851496
Alignment:
| Q |
53 |
ttaaacacgacaccgacacatgtatttacattca |
86 |
Q |
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| T |
23851529 |
ttaaacacgacaccgacacatgtgtttacattca |
23851496 |
T |
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