View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5548_low_6 (Length: 251)
Name: NF5548_low_6
Description: NF5548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5548_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 52288466 - 52288703
Alignment:
| Q |
7 |
tctctcagctcatcaaccgagttggctacttcgcactcctagccatttatttgatttctttcttacaagatactataagtgaatatatagaactcgatgg |
106 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52288466 |
tctctcagctcatcgaccgagttggctgcttcgcactcctagccatttatttgatttctttcttacaagatactataagtgaatatatagaactcgatgg |
52288565 |
T |
|
| Q |
107 |
ttaaccttgtaagaaggtaaatatttttaaaacaaaattcatttaacagtgaactacaattatctatgttagcagaagagattggaaagaagacaggaat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52288566 |
ttaaccttgtaagaaggtaaatatttttaaaacaaaattcatttaacagtgaactacaattatctattttagcagaagagattggaaagaagacaggaat |
52288665 |
T |
|
| Q |
207 |
ctgtgggcagtaaatagagtatttgtcgagaataatat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52288666 |
ctgtgggcagtaaatagagtatttgtcgagcataatat |
52288703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University