View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5549-Insertion-11 (Length: 308)
Name: NF5549-Insertion-11
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5549-Insertion-11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 43119552 - 43119256
Alignment:
| Q |
9 |
atctatcatatttgtcggttaattgacggaaaaatacataaatgaaccaaaatgagttattaaaagaaccgtatgtgtacacatcattcttcttcacnnn |
108 |
Q |
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| T |
43119552 |
atctatcatatttgtcggttaattgacgaaaaaatacataaatgaaccaaaatgagttattaaaagaatcgtatgtgtacacatcattcttcttc---tt |
43119456 |
T |
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| Q |
109 |
nnnnnnnnnnngtgtacacatcattaatttagtttgtcattggctaggttttgactcggctcatccagttttgttatcaaatcattttattcagtttgac |
208 |
Q |
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| T |
43119455 |
caaaaaaagaagtgtacacatcattaatttagtttgtcattggctaagttttgacttggctcatccggttttgttatcaaatcattttattcagtttgac |
43119356 |
T |
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| Q |
209 |
aatttatctggtacatcaaaagcgaagacatcaattatgtttcttatttagtgtgcttgcacttggatcatctggaatgaaaggaataatgaatttttaa |
308 |
Q |
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| T |
43119355 |
aatttagctagtacatcaaaagcgaagacatcaattatgtttcttatttagtgtgcttgcacttggatcatttggaatgaaaggaataatgaatttttaa |
43119256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 145 - 296
Target Start/End: Original strand, 18417692 - 18417843
Alignment:
| Q |
145 |
tcattggctaggttttgactcggctcatccagttttgttatcaaatcattttattcagtttgacaatttatctggtacatcaaaagcgaagacatcaatt |
244 |
Q |
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| T |
18417692 |
tcattggttgggttttgacttggcccatccggttttgttattagatcattttattcagtttggcaatttagttggtacatcaaaagcgaagacttcaatt |
18417791 |
T |
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| Q |
245 |
atgtttcttatttagtgtgcttgcacttggatcatctggaatgaaaggaata |
296 |
Q |
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| T |
18417792 |
atgtttcttatttggcgtgcctgcacttggatcatttggaaggaaaggaata |
18417843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 296
Target Start/End: Original strand, 10721583 - 10721676
Alignment:
| Q |
203 |
tttgacaatttatctggtacatcaaaagcgaagacatcaattatgtttcttatttagtgtgcttgcacttggatcatctggaatgaaaggaata |
296 |
Q |
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| T |
10721583 |
tttggcaattcatatggtacatcaaaagcaaaaacttcaattatatttcttatttgatgtgcttgcacttggatcatttggaaggaaatgaata |
10721676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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