View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5549-Insertion-2 (Length: 881)
Name: NF5549-Insertion-2
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5549-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 422 - 880
Target Start/End: Original strand, 3567677 - 3568125
Alignment:
| Q |
422 |
tacttcttgtgtgtgtcgtcagttgcaaaacctctgttgttgcggccgataattgtaacatttcttatttattctttatgaatttttatgtgttctatat |
521 |
Q |
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| T |
3567677 |
tacttcctgtttgtgtcgtcatttgcaaaacctctgttgttgcggccaataattgtaacatttcttatttattctttatgaatttttatgtgttctatat |
3567776 |
T |
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| Q |
522 |
aaaacacttattttctaatgagtcaagtggcgaaatttacacgcagttagtgctaagaagtggagaattgcatattcaa-tcnnnnnnngagggaattgc |
620 |
Q |
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| T |
3567777 |
aaaacacttattttctaatgagtcaagtggcgaaatttacacgcagttagtgctgagaagtggagaattgcatattcaatttttttttttagggaattgc |
3567876 |
T |
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| Q |
621 |
atattcaatctattaacttatataatatagtttagtttgtttaatatatattgtagatgatgaccaagtcaatacttaatatatgcacatagtatattnn |
720 |
Q |
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| T |
3567877 |
atattcaatctattaacttatataatatagtttagtttgtttaatatatattgtagatgattaccaagtcaatacttaatatatgcacataatatattaa |
3567976 |
T |
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| Q |
721 |
nnnnnnnnnnnnnnnnnnntatggcaggggttaatagaatttacccctaacatatcaaatgtatatacattcttttacaatttgagttgcaattaattac |
820 |
Q |
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| T |
3567977 |
acaaaaataaactaaaaaatatggtaggggttaatagaattt-----------atcaaatgtatatacattcttttacaatttgagttgcaattaattac |
3568065 |
T |
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| Q |
821 |
tataacttttgcttcttgtttatttgcagtgaaatgggaaatgctgcctattgaactagt |
880 |
Q |
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| T |
3568066 |
tataacttttgcttcttgtttatttgcagtgaaatgggaaatgctgcctattgaactagt |
3568125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 3567571 - 3567649
Alignment:
| Q |
8 |
gtttttaatcccctaaaggaactaaaagcaatcatttt-tataaaaggtaaatactaaaaatcatcaaaataattttaa |
85 |
Q |
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| T |
3567571 |
gtttttaatcccctaaaggaactaaaagcaatcattttttataaaaggtaaatactaaaaatcgtcaaaataattttaa |
3567649 |
T |
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