View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5549-Insertion-4 (Length: 832)

Name: NF5549-Insertion-4
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5549-Insertion-4
NF5549-Insertion-4
[»] chr5 (9 HSPs)
chr5 (325-730)||(37625207-37625588)
chr5 (326-564)||(29655817-29656061)
chr5 (325-730)||(37801745-37802126)
chr5 (52-134)||(29655596-29655678)
chr5 (564-669)||(29656991-29657094)
chr5 (184-274)||(37625098-37625189)
chr5 (184-274)||(37801636-37801727)
chr5 (792-832)||(37802145-37802185)
chr5 (184-247)||(29655723-29655786)
[»] chr1 (3 HSPs)
chr1 (652-825)||(20729473-20729645)
chr1 (52-134)||(20728375-20728457)
chr1 (551-609)||(20729355-20729413)
[»] chr3 (3 HSPs)
chr3 (672-773)||(50934632-50934732)
chr3 (52-134)||(50935265-50935346)
chr3 (528-610)||(50934837-50934919)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 2e-97; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 325 - 730
Target Start/End: Original strand, 37625207 - 37625588
Alignment:
Q  325 gattctattgaatataattatccaaaatccaaatgaaaggatttactttagaacaaaacttcgattccatttcttaatcgaggctgctgaaaggaatctt 424  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  |||||||||||||    
T  37625207 gattctattgaatataattatccaaaatcgaaatgaaaggatttactttagaacaaaacttcgattccatttcctaatcggggctattgaaaggaatctt 37625306  T
Q  425 atttggatgatgagttagagactggggtttactaaatgaatatttactagttaaactatttctgggaagggg-ctagcaaaatgaatcaatcctattggg 523  Q
     |||||| |||||||||||||                    |||||| |||| |||||||||||||| |||| |||||||| ||||||    || ||| |    
T  37625307 gtttggaagatgagttagagag-------------------atttaccagttcaactatttctgggaggggggctagcaaagtgaatc----ctgttgcg 37625383  T
Q  524 aagtacattctcatcattttcactacttctttatactctcatgcttcttccttatgtttattccatgtaatttactgtgaagttgttccaaattaatgtg 623  Q
    || ||||||||| ||||||||| ||| | ||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |||| |||||||    
T  37625384 aattacattctcttcattttcattacatttttattctctcatgcttcttccttatgtttattccatctaacttattgtgaagttgtttcaaactaatgtg 37625483  T
Q  624 cttgaatggtattttttagtaacatatcaatagtatctgtttgctcatttttctgcagttggtgctaatggatctggtaaaacaaattttttccatggta 723  Q
    | |  ||||||||| ||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  37625484 ccttgatggtatttcttagtaacat--caatagtatctgtttgctcatttttttgcagttggtgctaatggatctggcaaaacaatttttttccatggta 37625581  T

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Target: chr5; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 326 - 564
Target Start/End: Original strand, 29655817 - 29656061
Alignment:
Q  326 attctattgaatataattatccaaaatccaaatgaaaggatttactttagaacaaaacttcgattccatttcttaatcgaggctgctgaaaggaatct-- 423  Q
    ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       
T  29655817 attctattcgatatgattatccaaaatccaaatgaaaggatttactttagaacaaaacttcgattccatttcttaatcgaggctactgaaaggaatcaga 29655916  T
Q  424 ----tatttggatgatgagttagagactggggtttactaaatgaatatttactagttaaactatttctgggaaggggctagcaaaatgaatcaatcctat 519  Q
        |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||  |||||    
T  29655917 atcctatttggatgatgagttagagagtggggtttactaaacgaatatttactagttaaactatttctgggaaagggctagcaaactgaatcatacctat 29656016  T
Q  520 tgggaagtacattctcatcattttcactacttctttatactctca 564  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  29656017 tgggaagtacattctcatcatttgcactacttctttatactctca 29656061  T

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Target: chr5; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 325 - 730
Target Start/End: Original strand, 37801745 - 37802126
Alignment:
Q  325 gattctattgaatataattatccaaaatccaaatgaaaggatttactttagaacaaaacttcgattccatttcttaatcgaggctgctgaaaggaatctt 424  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||  |||||||||||||    
T  37801745 gattctattgaatataattatccaaaatcgaaatgaaaggatttactttagaacaaaactttgattccatttcctaatcggggctattgaaaggaatctt 37801844  T
Q  425 atttggatgatgagttagagactggggtttactaaatgaatatttactagttaaactatttctgggaagggg-ctagcaaaatgaatcaatcctattggg 523  Q
     |||||| |||||||||||||                    |||||| |||| | |||||||||||| |||| |||||||| ||||||    || ||| |    
T  37801845 gtttggaagatgagttagagag-------------------atttaccagttcagctatttctgggaggggggctagcaaagtgaatc----ctgttgcg 37801921  T
Q  524 aagtacattctcatcattttcactacttctttatactctcatgcttcttccttatgtttattccatgtaatttactgtgaagttgttccaaattaatgtg 623  Q
    || ||||||||| ||||||||| ||| | ||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |||| |||||||    
T  37801922 aattacattctcttcattttcattacatttttattctctcatgcttcttccttatgtttattccatctaacttattgtgaagttgtttcaaactaatgtg 37802021  T
Q  624 cttgaatggtattttttagtaacatatcaatagtatctgtttgctcatttttctgcagttggtgctaatggatctggtaaaacaaattttttccatggta 723  Q
    | |  ||||||||| ||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  37802022 ccttgatggtatttcttagtaacat--caatagtatctgtttgctcatttttttgcagttggtgctaatggatctggcaaaacaatttttttccatggta 37802119  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 29655596 - 29655678
Alignment:
Q  52 aggttgtgattgaaggtttcaagagttaccgagagcatattgccacagaggatttcagtcctaaagttaactgtgttggtaat 134  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  29655596 aggttgtgattgaaggtttcaagagttaccgagagcaaattgccacggaggatttcagtcctaaagttaactgtgttggtaat 29655678  T

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Target: chr5; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 564 - 669
Target Start/End: Original strand, 29656991 - 29657094
Alignment:
Q  564 atgcttcttccttatgtttattccatgtaatttactgtgaagttgttccaaattaatgtgcttgaatggtattttttagtaacatatcaatagtatctgt 663  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||  |||||||||||||||    
T  29656991 atgcttcttccttgtgtttattccatgtaatttactgtgtagttgtttcaaattaatgtgcctgaatggtatttcttagtaac--atcaatagtatctgt 29657088  T
Q  664 ttgctc 669  Q
    ||||||    
T  29657089 ttgctc 29657094  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 37625098 - 37625189
Alignment:
Q  184 gtaggaacgattactagtattttgttgagaagtgtaggactaaa-ttatattagaaattggcaaaatgctttattaagattgcacttctgga 274  Q
    |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||| || |||  |||||||||| |||||||    
T  37625098 gtaggaacgattactagtattttgttgagaagtgtacgactaaatttttattagaaattcgcaaagtggttttataagattgcaattctgga 37625189  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 37801636 - 37801727
Alignment:
Q  184 gtaggaacgattactagtattttgttgagaagtgtaggactaaa-ttatattagaaattggcaaaatgctttattaagattgcacttctgga 274  Q
    |||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||| ||||| || |||  |||||||||| |||||||    
T  37801636 gtaggaacgattactagtattttgttgagaagtgtacgtctaaatttttattagaaattcgcaaagtggttttataagattgcaattctgga 37801727  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 832
Target Start/End: Original strand, 37802145 - 37802185
Alignment:
Q  792 tgaaactggatggctaaccttgaatttgacacttacttccc 832  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  37802145 tgaaactggatggctcaacttgaatttgacacttacttccc 37802185  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 29655723 - 29655786
Alignment:
Q  184 gtaggaacgattactagtattttgttgagaagtgtaggactaaattatattagaaattggcaaa 247  Q
    ||||||| |||||||| |||||||| |||||||| | ||||| ||| | |||||||||||||||    
T  29655723 gtaggaatgattactaatattttgtcgagaagtgcatgactatatttttttagaaattggcaaa 29655786  T

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Target: chr1 (Bit Score: 98; Significance: 8e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 652 - 825
Target Start/End: Original strand, 20729473 - 20729645
Alignment:
Q  652 aatagtatctgtttgctcatttttctgcagttggtgctaatggatctggtaaaacaaattttttccatggtaagaaaattgccatatcctgtacaactgt 751  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||   |||||    
T  20729473 aatagtatctgtttgctcatttttttgcagttggtgctaatggatctggcaaaacaatttttttccatggtaagaaaatcgccatttcctgtgtcactgt 20729572  T
Q  752 tcttattacttgaccagctttttactctttgtgacatagctgaaactggatggctaaccttgaatttgacactt 825  Q
     ||||| ||||||||||  |||||||||||||||  |||||||||||| || ||| | ||||||||||||||||    
T  20729573 acttataacttgaccag-attttactctttgtgaagtagctgaaactgaattgctcatcttgaatttgacactt 20729645  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 20728375 - 20728457
Alignment:
Q  52 aggttgtgattgaaggtttcaagagttaccgagagcatattgccacagaggatttcagtcctaaagttaactgtgttggtaat 134  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20728375 aggttgtgattgaaggtttcaagagttatcgagagcaaattgccacagaggatttcagtcctaaagttaactgtgttggtaat 20728457  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 20729355 - 20729413
Alignment:
Q  551 tctttatactctcatgcttcttccttatgtttattccatgtaatttactgtgaagttgt 609  Q
    |||| ||||||| ||  ||||||||| |||||||||||| ||||||| |||||||||||    
T  20729355 tcttcatactctgataattcttccttttgtttattccatctaatttaatgtgaagttgt 20729413  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 672 - 773
Target Start/End: Complemental strand, 50934732 - 50934632
Alignment:
Q  672 ttttctgcagttggtgctaatggatctggtaaaacaaattttttccatggtaagaaaattgccatatcctgtacaactgttcttattacttgaccagctt 771  Q
    |||| ||||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||| |||||| | ||||| |||||||||||| | ||||    
T  50934732 ttttttgcagttggtgctaatggatctg-tcaaactaattttttctatggtaagaaaattgccatttcctgtgccactgtacttattacttgatctgctt 50934634  T
Q  772 tt 773  Q
    ||    
T  50934633 tt 50934632  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 50935346 - 50935265
Alignment:
Q  52 aggttgtgattgaaggtttcaagagttaccgagagcatattgccacagaggatttcagtcctaaagttaactgtgttggtaat 134  Q
    |||||||||| |||||||||||||||||||||||| |  ||| ||| |||||||||||| |||||||||| ||||||||||||    
T  50935346 aggttgtgatcgaaggtttcaagagttaccgagagaaatttgacacggaggatttcagt-ctaaagttaattgtgttggtaat 50935265  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 528 - 610
Target Start/End: Complemental strand, 50934919 - 50934837
Alignment:
Q  528 acattctcatcattttcactacttctttatactctcatgcttcttccttatgtttattccatgtaatttactgtgaagttgtt 610  Q
    |||||||| |||||||||  ||  ||||||||||| | | ||||||||| |||||||||||| ||||||| ||||||||||||    
T  50934919 acattctcttcattttcatcaccactttatactctgaagattcttccttttgtttattccatctaatttaatgtgaagttgtt 50934837  T

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