View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5549-Insertion-6 (Length: 684)

Name: NF5549-Insertion-6
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5549-Insertion-6
NF5549-Insertion-6
[»] chr7 (1 HSPs)
chr7 (569-684)||(43103836-43103951)
[»] chr5 (3 HSPs)
chr5 (569-684)||(27364598-27364712)
chr5 (569-606)||(27365640-27365677)
chr5 (569-606)||(22778251-22778288)
[»] chr4 (1 HSPs)
chr4 (569-683)||(1866168-1866282)
[»] chr1 (5 HSPs)
chr1 (569-683)||(10920063-10920177)
chr1 (569-683)||(23818199-23818313)
chr1 (576-662)||(16145326-16145412)
chr1 (567-605)||(28762445-28762483)
chr1 (569-606)||(4929814-4929851)
[»] chr6 (2 HSPs)
chr6 (627-684)||(2127740-2127797)
chr6 (569-606)||(1859798-1859835)
[»] chr2 (2 HSPs)
chr2 (569-617)||(3322916-3322964)
chr2 (569-606)||(13913466-13913503)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 569 - 684
Target Start/End: Original strand, 43103836 - 43103951
Alignment:
Q  569 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 668  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  43103836 tatcaagtgagaggacattttataatgagagatgagagcattaaattaggaccctaggatcaaattgaaaggtggagatgatatttcacgtaatgtggtg 43103935  T
Q  669 tatgactacctgattg 684  Q
    ||||||||||||||||    
T  43103936 tatgactacctgattg 43103951  T

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Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 569 - 684
Target Start/End: Original strand, 27364598 - 27364712
Alignment:
Q  569 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 668  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  27364598 tatcaagtgagagtacattttataatgagagatgagagcattaaattaggaccctagg-tcaaattgaaaggtggagatgatatttcacttaatgtggtg 27364696  T
Q  669 tatgactacctgattg 684  Q
    ||||||||||||||||    
T  27364697 tatgactacctgattg 27364712  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 606
Target Start/End: Complemental strand, 27365677 - 27365640
Alignment:
Q  569 tatcaagtgagaggacattttataatgaaagatgagag 606  Q
    |||||||||||||||||||||||||||| |||||||||    
T  27365677 tatcaagtgagaggacattttataatgagagatgagag 27365640  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 606
Target Start/End: Original strand, 22778251 - 22778288
Alignment:
Q  569 tatcaagtgagaggacattttataatgaaagatgagag 606  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  22778251 tatcaagtgagaggacatcttataatgagagatgagag 22778288  T

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Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 569 - 683
Target Start/End: Complemental strand, 1866282 - 1866168
Alignment:
Q  569 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 668  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  1866282 tatcaagtgagaggacattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 1866183  T
Q  669 tatgactacctgatt 683  Q
    | |||||||||||||    
T  1866182 tgtgactacctgatt 1866168  T

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Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 569 - 683
Target Start/End: Complemental strand, 10920177 - 10920063
Alignment:
Q  569 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 668  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  10920177 tatcaagtgagaggacattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 10920078  T
Q  669 tatgactacctgatt 683  Q
    | |||||||||||||    
T  10920077 tgtgactacctgatt 10920063  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 569 - 683
Target Start/End: Complemental strand, 23818313 - 23818199
Alignment:
Q  569 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 668  Q
    ||||||||||||||| |||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  23818313 tatcaagtgagaggatattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 23818214  T
Q  669 tatgactacctgatt 683  Q
    | |||||||||||||    
T  23818213 tgtgactacctgatt 23818199  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 576 - 662
Target Start/End: Original strand, 16145326 - 16145412
Alignment:
Q  576 tgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaat 662  Q
    ||||||||  ||||||||| | ||||||||||||||| |||| |||||||||| ||  | || ||||||||||||||||||||||||    
T  16145326 tgagaggaggttttataataagagatgagagcattaagttagcaccctaagattaatctgaatggtggagatgatatttcacttaat 16145412  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 605
Target Start/End: Original strand, 28762445 - 28762483
Alignment:
Q  567 tctatcaagtgagaggacattttataatgaaagatgaga 605  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  28762445 tctatcaagtgagaggacattttagaatgagagatgaga 28762483  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 606
Target Start/End: Original strand, 4929814 - 4929851
Alignment:
Q  569 tatcaagtgagaggacattttataatgaaagatgagag 606  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  4929814 tatcaagtgagaggacatcttataatgagagatgagag 4929851  T

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Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 627 - 684
Target Start/End: Complemental strand, 2127797 - 2127740
Alignment:
Q  627 atcaaattaaaaggtggagatgatatttcacttaatgtggtgtatgactacctgattg 684  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  2127797 atcaaattgaaatgtgaagatgatatttcacttaatgtggtgtatgactacctgattg 2127740  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 606
Target Start/End: Complemental strand, 1859835 - 1859798
Alignment:
Q  569 tatcaagtgagaggacattttataatgaaagatgagag 606  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  1859835 tatcaagtgagaggacattttaaaatgagagatgagag 1859798  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 617
Target Start/End: Original strand, 3322916 - 3322964
Alignment:
Q  569 tatcaagtgagaggacattttataatgaaagatgagagcattaaattag 617  Q
    |||||||||||||||||||||| ||||| |||||||||  |||||||||    
T  3322916 tatcaagtgagaggacattttaaaatgagagatgagagagttaaattag 3322964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 606
Target Start/End: Complemental strand, 13913503 - 13913466
Alignment:
Q  569 tatcaagtgagaggacattttataatgaaagatgagag 606  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  13913503 tatcaagtgagaggacatcttataatgagagatgagag 13913466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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