View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5549-Insertion-7 (Length: 539)
Name: NF5549-Insertion-7
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5549-Insertion-7 |
 | |
|
| [»] chr3 (21 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 7 - 539
Target Start/End: Complemental strand, 26653448 - 26652915
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26653448 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacaattgttttcttaaac |
26653349 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26653348 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaagcaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
26653249 |
T |
|
| Q |
207 |
ctaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactaccttagtcaattaaaatatacattcatgt |
306 |
Q |
| |
|
|||||||| || |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
26653248 |
ctaattctatatgaggaaaaacaaaaattgacaaccaagctgcaaggaatgcatcatgttcaatttcactaccttagtcaatgaaaatatccattcatgt |
26653149 |
T |
|
| Q |
307 |
tggtgtgttagccacacctccgtgtttgctattaagttgttttcttggaatgttgagcttcttcatagtat-cttctaatgcttgttcattcatcatggg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26653148 |
tggtgtgttagccacacctccgtgtttgctattaagttgttttcttgcaatgttgagcttcttcatagtatatttctaatgcttgttcattcatcatggg |
26653049 |
T |
|
| Q |
406 |
tataacactcaactttcaaaacaaaaatggttacattgcttaatttggaaaggctacgttattggccacaaaaattgtactacagtgtataccaagggaa |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26653048 |
tataacactcaactttcaaaacaaaaatggttactttgcttaatttggaaaggctacgttgttggccacaaaaattgtactacagtgtatacgaagggag |
26652949 |
T |
|
| Q |
506 |
aatgaatggtgaatgtgtgaaaaccccaatgtat |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26652948 |
aatgaatggtgaatgtgtgaaaaccccaatgtat |
26652915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 7 - 366
Target Start/End: Original strand, 20036422 - 20036787
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||| | ||||||||||| |||| ||||||||||||||| |
|
|
| T |
20036422 |
aatttgaaccaagtaaaagggtgattcaagagtaacttctaaaggaagtctatcaccaccaacatgacattttgacaaatcaacaattgttttcttaaac |
20036521 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
206 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||| ||||| || | |||| |||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
20036522 |
aaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaatacgatttcctctagcaagatatacagcaataggaaacaaagaacttttca |
20036621 |
T |
|
| Q |
207 |
cta---attctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactaccttagtcaattaaaatatacattca |
303 |
Q |
| |
|
| | | | |||| ||||||||||||||| || |||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||| ||| || |
|
|
| T |
20036622 |
ccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca |
20036721 |
T |
|
| Q |
304 |
tgttggtgtgttagccacacctccgtgttt-gc--tattaagttgttttcttggaatgttgagctt |
366 |
Q |
| |
|
|| |||| ||||||||||||| ||||| || || ||||||||| ||||| |||| ||||||| |
|
|
| T |
20036722 |
gtatgatgtgctagccacacctccatgtttcgcattagtaagttgttgtcttgcaatgatgagctt |
20036787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 7 - 366
Target Start/End: Complemental strand, 19849289 - 19848924
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||| ||||| |||||||||||||||||||||| | ||||||||||| || |||||||||||||||| |
|
|
| T |
19849289 |
aatttgaaccaaataaaagggtgatttaagagtaatctccaagggaaatctatcaccaccaacatgacattttgacaaatcagtgattgttttcttaaac |
19849190 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
206 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||| ||||| || | |||| |||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
19849189 |
aaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaatacgatttcctctagcaagatatacagcaataggaaacaaagaacttttca |
19849090 |
T |
|
| Q |
207 |
cta---attctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactaccttagtcaattaaaatatacattca |
303 |
Q |
| |
|
| | | | |||| ||||||||||||||| || |||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||| ||| || |
|
|
| T |
19849089 |
ccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca |
19848990 |
T |
|
| Q |
304 |
tgttggtgtgttagccacacctccgtgttt-gc--tattaagttgttttcttggaatgttgagctt |
366 |
Q |
| |
|
|| |||| ||||||||||||| ||||| || || ||||||||| ||||| |||| ||||||| |
|
|
| T |
19848989 |
gtatgatgtgctagccacacctccatgtttcgcattagtaagttgttgtcttgcaatgatgagctt |
19848924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 19812576 - 19812302
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||| ||||| ||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| |
|
|
| T |
19812576 |
aatttgaaccaagtaaaagggtgattgaagagtaatctccaagggaaatctatcaccaccaacaggatattttgacaaatcaacaattgttttcttaaac |
19812477 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
206 |
Q |
| |
|
||| | || || |||||||| ||||| || |||||||||||||| | |||||||| |||||||||||| ||| ||| || | ||||||||| |||||| |
|
|
| T |
19812476 |
aaacttaaatctttatatatgctagccaagacagctggtgccaaagcaataggataccctctagcaagaagaatagcgatcggaaacaaagactttttca |
19812377 |
T |
|
| Q |
207 |
ctaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
| || | |||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
19812376 |
ccaaatatttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctt |
19812302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 7 - 296
Target Start/End: Complemental strand, 19956383 - 19956091
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||| ||| ||||| ||||||||||||| ||| ||||||||||||| |||| || ||||||| ||| |
|
|
| T |
19956383 |
aatttgaaccaagtaaaagggtgattgaagagtaagttctgaaggatatctatcaccacccacaggatattttgacaaatcaactgtttttttctttaac |
19956284 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
206 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
19956283 |
aaagttaaatccttatatatgctagctaaaacagctggtgccaaagcaataggatttcctctagcaagatgaacaacaataggaaacaaataacttttca |
19956184 |
T |
|
| Q |
207 |
c---taattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactaccttagtcaattaaaatat |
296 |
Q |
| |
|
| | | |||| |||| ||||||||||||| |||||||| |||||| || ||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
19956183 |
cggaagaatatttatgagggaaaacaaaaattgacaaccaagtagcaagaaaagcttcatgttcaatttcactacctttatcaatgaaaatat |
19956091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 19951420 - 19951146
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||| ||| |||||| ||||||||||||| |||| ||||||||||||| |||| |||| ||| |||||| |
|
|
| T |
19951420 |
aatttgaaccaagtaaaagggtgattgaagagtaagttctaaaggatatctatcaccacccacatgatattttgacaaatcaacaattgcttttttaaac |
19951321 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
206 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||| | | || |||| ||| |
|
|
| T |
19951320 |
aaagttaaatccttatatatgctagctaaaacagctggagccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctca |
19951221 |
T |
|
| Q |
207 |
ctaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
| |||| ||| |||||||||||||| || |||||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
19951220 |
ccaatttattattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttcatgttcaatttcactacctt |
19951146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 26647300 - 26647026
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||| || || |||| |||| |||| | ||||||||||||| |
|
|
| T |
26647300 |
aatttgaaccaagtaaaagggtgattgaagagtaacttccaaaggatatctatcaccaccatcagaaatttttttcaaatcaacaagtgttttcttaaac |
26647201 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
206 |
Q |
| |
|
||| | || |||||||||| |||||||||||||| |||||||| | ||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
26647200 |
aaacttaaatccttatataagctagctaaaacagccggtgccaaagcaattggattccctctagcaagatgaacagcaataggaaacaaacaacttttca |
26647101 |
T |
|
| Q |
207 |
ctaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
| || | | | ||||||||||| ||| || |||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
26647100 |
ccaaatttagatgaggaaaaacataaactgacaaccaagtagaaaggaatgcttcatgttcaatttcactacctt |
26647026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 20016020 - 20016297
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
|||||||||||| |||| ||||||| | || ||||||| |||||| | ||||||||||| |||| ||||||||||||| |||| ||||||||||||||| |
|
|
| T |
20016020 |
aatttgaaccaaataaatgggtgattgaagtgtaacttctaaaggatacctatcaccacccacatgatattttgacaaatcaacaattgttttcttaaac |
20016119 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
206 |
Q |
| |
|
||| | || || |||||||| ||||| || |||||||||||||| | ||||||||||| |||||||||||||| |||||| | ||||||| ||||||||| |
|
|
| T |
20016120 |
aaacttaaatctttatatatgctagccaagacagctggtgccaaagcaataggatttcgtctagcaagatgaatagcaatcggaaacaaacaacttttca |
20016219 |
T |
|
| Q |
207 |
c---taattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
| | | |||| |||| ||||||||||||| || ||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
20016220 |
cggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatttcactacctt |
20016297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 19818852 - 19818587
Alignment:
| Q |
8 |
atttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaaca |
107 |
Q |
| |
|
||||||||||| |||||||||||| | ||| ||| ||| |||||||||||||||||||||||| |||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
19818852 |
atttgaaccaaataaaagggtgattgaagagtaagttctaaaggaaatctatcaccaccaacagaatattttgacaaatcaactatttttttcttaaaca |
19818753 |
T |
|
| Q |
108 |
aagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttcac |
207 |
Q |
| |
|
|| | || || ||||| || |||| |||||||| |||||||| | ||||||||| ||||||||||||| |||||||| || ||||| | || ||||||| |
|
|
| T |
19818752 |
aacttaaatctttataaatgttagccaaaacagccggtgccaaagcaataggattccctctagcaagattaacagcaacaggaaacagataatttttcac |
19818653 |
T |
|
| Q |
208 |
taattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttc |
273 |
Q |
| |
|
|| | ||| |||||||||||||||||| ||||||| |||||| || ||||||||||||||||| |
|
|
| T |
19818652 |
caaattcttatgaggaaaaacaaaaattgataaccaagtagcaagaaaagcttcatgttcaatttc |
19818587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 19838692 - 19838415
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||||| |||||| || |||||| ||||||| || |||||||||| |||| || ||||||| ||| |
|
|
| T |
19838692 |
aatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggatatgtatcacaaccaacaggatgttttgacaaatcaactgtttttttctttaac |
19838593 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
206 |
Q |
| |
|
||||| || || |||||||| ||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |||| | ||||||| | ||||||| |
|
|
| T |
19838592 |
aaagttaaatcattatatatgctagctaaaacagctggtgccaaagcaatagaatttcctctagcaagatgaacaacaattggaaacaaaaagcttttca |
19838493 |
T |
|
| Q |
207 |
c---taattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
| | | || | ||||||||||||||||| |||||||| ||| || || ||||||||||||||||| ||||||| |
|
|
| T |
19838492 |
cgcaagagtgttgattaggaaaaacaaaaattgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctt |
19838415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 20046416 - 20046145
Alignment:
| Q |
10 |
ttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaacaaa |
109 |
Q |
| |
|
||||||||| |||||||||||| | | | ||| ||| | ||||||||||||||||||||| ||||||| ||| | ||| ||||| |||||||| ||| |
|
|
| T |
20046416 |
ttgaaccaaataaaagggtgatagaatagtaaattcaacaggaaatctatcaccaccaaccggatattttaacagatcaataattgtgttcttaaataaa |
20046317 |
T |
|
| Q |
110 |
gtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttcacta |
209 |
Q |
| |
|
| || ||||||||||| ||| | |||||||| |||||||| | ||| ||||||||||||||||||| || |||||||||||||||| || ||||||| | |
|
|
| T |
20046316 |
cttaaatccttatatatgctacccaaaacagcaggtgccaaagcaattggatttcctctagcaagattaatagcaatagaaaacaaacaatttttcacca |
20046217 |
T |
|
| Q |
210 |
attctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
| |||| |||||||||||||||||| |||||||| || |||||| ||||| ||||||||||||||||||| |
|
|
| T |
20046216 |
tatttttatgaggaaaaacaaaaattgacaaccaagtagtaaggaaggcttcgtgttcaatttcactacctt |
20046145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 7 - 295
Target Start/End: Complemental strand, 30914942 - 30914651
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
|||||| ||||||| ||||||||| | ||| |||| |||| |||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
30914942 |
aatttgtaccaagtcaaagggtgagtgaagagtaacctccataggacatctatcaccaccaacttgatattttgacaaaccaactattgttttcttaaac |
30914843 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacag---caatagaaaacaaagaacttt |
203 |
Q |
| |
|
||| | || || || ||||| ||||| || |||||| || | || | || |||||||||||||||| || |||||| ||||||| |||||| |
|
|
| T |
30914842 |
aaacttaaatctttgtatatgctagccaatttttttggtgctaatgcaacaatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttt |
30914743 |
T |
|
| Q |
204 |
tcactaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactaccttagtcaattaaaata |
295 |
Q |
| |
|
|||| || ||||| |||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
30914742 |
tcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata |
30914651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 87 - 281
Target Start/End: Complemental strand, 19853731 - 19853534
Alignment:
| Q |
87 |
caacgattgttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaat |
186 |
Q |
| |
|
|||| ||| |||||||||||||| |||| || ||||||| ||||| |||||||| |||||||| | ||||| ||| |||||||||||| ||| |||||| |
|
|
| T |
19853731 |
caacaatttttttcttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaaagcaatagtattacctctagcaagacgaatagcaat |
19853632 |
T |
|
| Q |
187 |
agaaaacaaagaacttttcac---taattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
|| ||||||||| |||||||| || | | || |||||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
19853631 |
aggaaacaaagatcttttcacaataaagtatctatgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatttcactacctt |
19853534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 87 - 281
Target Start/End: Original strand, 24839873 - 24840070
Alignment:
| Q |
87 |
caacgattgttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaat |
186 |
Q |
| |
|
|||| ||||| ||||||||||| | || || ||||||| ||||| |||||||| |||||||| | ||||||||| |||||||| ||||||||||||| |
|
|
| T |
24839873 |
caacaattgtgttcttaaacaaccttaaatcgttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagctagatgaacagcaac |
24839972 |
T |
|
| Q |
187 |
agaaaacaaagaacttttcacta---attctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
|| ||||||||||| |||||||| | | |||| |||| ||||||||||||| |||||||| |||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
24839973 |
aggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctt |
24840070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 97 - 281
Target Start/End: Complemental strand, 19943925 - 19943742
Alignment:
| Q |
97 |
tttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaa |
196 |
Q |
| |
|
||||||||||||| |||| |||||||||| ||||| |||||||| |||||||| | |||||| | ||||||||||||||||||||||||| |||| | |
|
|
| T |
19943925 |
tttcttaaacaaactcaaatccttatataagctagccaaaacagcaggtgccaaagccataggaatccctctagcaagatgaacagcaataggaaac--a |
19943828 |
T |
|
| Q |
197 |
gaacttttcacta-at--tctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
||||||||||| | || | | || |||||||||| |||||| |||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
19943827 |
gaacttttcaccacattgtatctatgaggaaaaac--aaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctt |
19943742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 97 - 281
Target Start/End: Complemental strand, 19858281 - 19858094
Alignment:
| Q |
97 |
tttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaa |
196 |
Q |
| |
|
||||||||||||| |||| || ||||||| ||||| |||||||| |||||||| | |||| |||||||||||||||| || |||||||| ||||||| |
|
|
| T |
19858281 |
tttcttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaatagcaataggaaacaaa |
19858182 |
T |
|
| Q |
197 |
gaacttttcac---taattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
|| |||||||| || | | || ||||||||||||||||| |||||||| |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
19858181 |
gatcttttcacattaaagtatctattaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaatttcactacctt |
19858094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 19989818 - 19989544
Alignment:
| Q |
10 |
ttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaacaaa |
109 |
Q |
| |
|
|||||||||||||||||||||| | ||| || | |||| |||| |||||||||||||||| | |||||||||| ||| | | | ||||||| ||| |
|
|
| T |
19989818 |
ttgaaccaagtaaaagggtgattgaagaatagcctccatgggaagtctatcaccaccaacaggaagttttgacaaattaactaatatgttcttaagtaaa |
19989719 |
T |
|
| Q |
110 |
gtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttcacta |
209 |
Q |
| |
|
|| |||||||| | |||||| ||||| || ||||| || | |||||||||||||||||||||||||| ||||| | ||| |||||||| ||||| | |
|
|
| T |
19989718 |
cctaaatccttatacaaactagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatagcaacacgaaagaaagaactattcacaa |
19989619 |
T |
|
| Q |
210 |
----attctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
| | |||| |||| ||||||||||| |||||||| |||||| |||||||||||||||| |||| |||||| |
|
|
| T |
19989618 |
cacgact-tttataaggatgaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctt |
19989544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 19971820 - 19971708
Alignment:
| Q |
97 |
tttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaa |
196 |
Q |
| |
|
||||||||||| ||| | |||||||||| ||||| ||||||| ||||||||| | ||||| ||| |||||| | | ||||| |||||||| ||||||| |
|
|
| T |
19971820 |
tttcttaaacagagttcaatccttatataagctagccaaaacagttggtgccaaagcaatagtattgcctctaaccaaatgaatagcaataggaaacaaa |
19971721 |
T |
|
| Q |
197 |
gaacttttcacta |
209 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19971720 |
gaacttttcacta |
19971708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 17115012 - 17114900
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||| |||||||||||||||||| |||| || |||||||||| ||| || |||||||||||| |
|
|
| T |
17115012 |
aatttgaaccaagtaaaagggcattcgacgagcaacttctaaaggaaatctatcaccataaacaggattttttgacaaatcaataatagttttcttaaac |
17114913 |
T |
|
| Q |
107 |
aaagtcaagtcct |
119 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
17114912 |
aaagtcaaatcct |
17114900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 489
Target Start/End: Complemental strand, 26646459 - 26646345
Alignment:
| Q |
371 |
atagtatcttctaatgcttgttcattcatcatgggtataacactcaacttt-caaaacaaaaatggttacattgcttaatttggaaaggctacgttattg |
469 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| ||||||| |||| |||| ||||||||||| ||| |||| |||||||||||| ||| |
|
|
| T |
26646459 |
atagtatcttccaatgtttgttcattcatcatgggtatcacactcagctttaaaaaaaaaaaatggtta-----ctttctttgcaaaggctacgttgttg |
26646365 |
T |
|
| Q |
470 |
gccacaaaaattgtactaca |
489 |
Q |
| |
|
|| |||||| ||||| |||| |
|
|
| T |
26646364 |
gcaacaaaatttgtagtaca |
26646345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 19832168 - 19832122
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaa |
53 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||||| ||||||| |
|
|
| T |
19832168 |
aatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggaa |
19832122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 5e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 1717510 - 1717236
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
||||||||||||||||||||||||| | ||| |||| ||| || ||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
1717510 |
aatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctatcgccaccaacaggatattttgacaaaccaactattgttttcttaaac |
1717411 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
206 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
1717410 |
aaagttaaatccttatatatgctagctaaaacagccggtgccaaagcaataggatttcctctagcaagatgaacagcaataggaaacaaagattttttca |
1717311 |
T |
|
| Q |
207 |
ctaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
| || ||||| ||||||||||| ||| | |||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
1717310 |
ccaaagctttatgaggaaaaacataaaccgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctt |
1717236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 9815333 - 9815059
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||||| |||||| ||||||||||||||||| | ||||||||||| ||| ||||||||||||||| |
|
|
| T |
9815333 |
aatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggatatctatcaccaccaacagataattttgacaaattaactattgttttcttaaac |
9815234 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
206 |
Q |
| |
|
||| | || || ||||| |||||||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9815233 |
aaacttaaatcgttataaatactagctaaaacagctggtgccaaagcaatagaatttcctctagcaagatgaatagcaatagaaaacaaagaacttttca |
9815134 |
T |
|
| Q |
207 |
ctaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
| || |||| ||| |||||||| |||| |||||| | ||||| ||| |||||||| |||||||||||||||| |
|
|
| T |
9815133 |
ccaaagatttatgagttaaaacaaagattgacaaccacgtagcaatgaacgcttcatgctcaatttcactacctt |
9815059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 26354746 - 26355023
Alignment:
| Q |
7 |
aatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaac |
106 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| ||||||| |||||| ||||||||||||||||| | ||||||||||| |||| || |||||||||||| |
|
|
| T |
26354746 |
aatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccaccaacagataattttgacaaatcaacaatggttttcttaaac |
26354845 |
T |
|
| Q |
107 |
aaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttca |
206 |
Q |
| |
|
| | || ||||||||||| |||||||||||||| |||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
26354846 |
acgcttaaatccttatatatgctagctaaaacagccggtgccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttca |
26354945 |
T |
|
| Q |
207 |
cta--attc-tttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
| | || | ||| | ||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26354946 |
ccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatgcttcatgttcaacttcactacctt |
26355023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 49 - 281
Target Start/End: Complemental strand, 6398518 - 6398283
Alignment:
| Q |
49 |
aggaaatctatcaccaccaacataatattttgacaaaccaacgattgtttt-cttaaacaaagtcaagtccttatatata--ctagctaaaacagctggt |
145 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||| | ||| ||| |||| |||||| ||||| || |||||||||||| |||||||||||||||||| |
|
|
| T |
6398518 |
aggaaatctatcatcatcaacatgatattttgacatatcaataattttttttcttaaataaagttaaatccttatatatatgctagctaaaacagctggt |
6398419 |
T |
|
| Q |
146 |
gccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattggcaaccaag |
245 |
Q |
| |
|
||||| || |||||||||||||| |||| ||||||||||||||||||| |||||||||| | | ||||| |||||||||||||||| ||||||| |
|
|
| T |
6398418 |
gccaaaccgattggatttcctctagcgagattaacagcaatagaaaacaaacaacttttcaccattgttttactaggaaaaacaaaaattaacaaccaat |
6398319 |
T |
|
| Q |
246 |
cagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6398318 |
tagcaaggaaggcttcatgttcaatttcactacctt |
6398283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 6397561 - 6397834
Alignment:
| Q |
10 |
ttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgacaaaccaacgattgttttcttaaacaaa |
109 |
Q |
| |
|
||||||||||||||| |||||| | ||| ||| ||| | | ||||| ||||| |||||||| |||||| |||||| ||| |||||||||||||| ||| |
|
|
| T |
6397561 |
ttgaaccaagtaaaaaggtgatagaagagtaaattcaacatgaaatttatcatcaccaacaagatatttcgacaaatcaataattgttttcttaaataaa |
6397660 |
T |
|
| Q |
110 |
gtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaa--agaacttttcac |
207 |
Q |
| |
|
| || ||||||||||| |||| ||||||| ||||||||| | ||| |||||| |||||||||||| |||| |||||||| ||| | |||||||||| |
|
|
| T |
6397661 |
gataaatccttatatatgatagccaaaacagatggtgccaaagcaattggattttctctagcaagattaacattaatagaaagcaaacaaaacttttcac |
6397760 |
T |
|
| Q |
208 |
taattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
| || |||| |||||||| || |||||| |||||| | ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6397761 |
catttttttaggaggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctt |
6397834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 63 - 271
Target Start/End: Complemental strand, 12581632 - 12581424
Alignment:
| Q |
63 |
caccaacataatattttgacaaaccaacgattgttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatt |
162 |
Q |
| |
|
|||||||| ||||||||||| | ||| |||||||||||||| ||||| || ||||||| ||| ||||| ||||||| | | | ||| ||||| |||| |
|
|
| T |
12581632 |
caccaacaagatattttgacagatcaataattgttttcttaaataaagttaaatccttatttatgctagccaaaacagtttgcggcaaagtaattcgatt |
12581533 |
T |
|
| Q |
163 |
tcctctagcaagatgaacagcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttca |
262 |
Q |
| |
|
|| ||||||||||| || |||||||||||||||| |||||||||| | || | ||||||||||||||||||||| |||||||| ||||||||| |||||| |
|
|
| T |
12581532 |
tcttctagcaagattaatagcaatagaaaacaaataacttttcaccatttttctacgaggaaaaacaaaaattgacaaccaagtagcaaggaaggcttca |
12581433 |
T |
|
| Q |
263 |
tgttcaatt |
271 |
Q |
| |
|
||||||||| |
|
|
| T |
12581432 |
tgttcaatt |
12581424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 92 - 271
Target Start/End: Complemental strand, 12497420 - 12497241
Alignment:
| Q |
92 |
attgttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaa |
191 |
Q |
| |
|
|||||||||||||| ||||| || || |||| ||| ||||| ||||||||||| | ||| ||||| |||||| ||||||||||| || ||||||||||| |
|
|
| T |
12497420 |
attgttttcttaaataaagttaaatcgttatttatgctagccaaaacagctggcggcaaagtaatttgatttcttctagcaagattaatagcaatagaaa |
12497321 |
T |
|
| Q |
192 |
acaaagaacttttcactaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatt |
271 |
Q |
| |
|
||||| ||||| |||| | || | || |||||||||||||||||| |||||| | ||||||||| ||||||||||||||| |
|
|
| T |
12497320 |
acaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaatt |
12497241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 92 - 271
Target Start/End: Complemental strand, 12521285 - 12521106
Alignment:
| Q |
92 |
attgttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaa |
191 |
Q |
| |
|
|||||||||||||| ||||| || || |||| ||| ||||| ||||||||||| | ||| ||||| |||||| ||||||||||| || ||||||||||| |
|
|
| T |
12521285 |
attgttttcttaaataaagttaaatcgttatttatgctagccaaaacagctggcggcaaagtaatttgatttcttctagcaagattaatagcaatagaaa |
12521186 |
T |
|
| Q |
192 |
acaaagaacttttcactaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatt |
271 |
Q |
| |
|
||||| ||||| |||| | || | || |||||||||||||||||| |||||| | ||||||||| ||||||||||||||| |
|
|
| T |
12521185 |
acaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttcatgttcaatt |
12521106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 271
Target Start/End: Original strand, 12519699 - 12519878
Alignment:
| Q |
91 |
gattgttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaa |
190 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||| ||| ||||| |||||| ||| |||| | ||| ||||||| ||||||||||| |||| ||| |||| |
|
|
| T |
12519699 |
gatttttttcttaaataaagttaagtccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaccaacagaa |
12519798 |
T |
|
| Q |
191 |
aacaaagaacttttcactaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatt |
271 |
Q |
| |
|
|||||| || || |||| ||| |||| |||||||||||||||||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
12519799 |
aacaaacaatttgtcac-cattttttatgaggaaaaacaaaaattgacaaccaagttaaaaggaaggcttcatgttcaatt |
12519878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 271
Target Start/End: Original strand, 12579993 - 12580167
Alignment:
| Q |
96 |
ttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaa |
195 |
Q |
| |
|
|||||||||| || || || ||||||| ||| ||||| |||||| || |||| | ||| ||||||| ||||||||||| |||| ||| ||||||||| |
|
|
| T |
12579993 |
ttttcttaaataatgttaaatccttatttatgctagccaaaacaattgccaccaaagaaattggatttcttctagcaagattaacaccaacagaaaacaa |
12580092 |
T |
|
| Q |
196 |
agaacttttcactaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatt |
271 |
Q |
| |
|
| ||||| |||| | || |||| |||||||||||||||||| |||||||| | |||||| || |||||||||||| |
|
|
| T |
12580093 |
acaacttgtcaccattt-tttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcctcatgttcaatt |
12580167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 22651781 - 22651913
Alignment:
| Q |
76 |
ttttgacaaaccaacgattgttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaaga |
175 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| || |||||||| || ||||| |||||||||||||| || | |||||||||||||||||||||| |
|
|
| T |
22651781 |
ttttgacaaatcaacaattgttttcttaaacaaagttaaatccttatacatgctagccaaaacagctggtgcaaaagcaataggatttcctctagcaaga |
22651880 |
T |
|
| Q |
176 |
tgaacagcaatagaaaacaaagaacttttcact |
208 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |
|
|
| T |
22651881 |
tgaacagcaataggaaacaaacaacttttcact |
22651913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 97 - 279
Target Start/End: Original strand, 22689564 - 22689749
Alignment:
| Q |
97 |
tttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaagatgaacagcaatagaaaacaaa |
196 |
Q |
| |
|
||||||||||||| |||| ||||||||||| ||||| |||||||| |||||||| | ||||| ||| |||||||| ||||||| || ||||| ||||||| |
|
|
| T |
22689564 |
tttcttaaacaaactcaaatccttatatatgctagccaaaacagcaggtgccaaagcaatagtattgcctctagccagatgaatagaaatagtaaacaaa |
22689663 |
T |
|
| Q |
197 |
gaacttttcac---taattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacc |
279 |
Q |
| |
|
|||||||| || | | |||| |||||||||||||||||| |||||||| |||||| |||||||||||||||| |||| |||| |
|
|
| T |
22689664 |
gaacttttgaccgacatatttttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattacc |
22689749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 154 - 281
Target Start/End: Original strand, 22685649 - 22685776
Alignment:
| Q |
154 |
aataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttcactaattctttacgaggaaaaacaaaaattggcaaccaagcagcaagg |
253 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| | ||||| |||| ||||||| || |||| ||||||||||||||| || ||||||||||||||| |
|
|
| T |
22685649 |
aataggattccctctagcaagatgaatagcaatcggaaacatagaagttttcaccaaaattttatgaggaaaaacaaaaagtgacaaccaagcagcaaga |
22685748 |
T |
|
| Q |
254 |
aatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
22685749 |
aatgcttcatgctcaatttcactacctt |
22685776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 76 - 277
Target Start/End: Original strand, 11564022 - 11564226
Alignment:
| Q |
76 |
ttttgacaaaccaacgattgttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaggtaataggatttcctctagcaaga |
175 |
Q |
| |
|
||||| ||| ||||| ||||| | |||||||||| ||| |||||||||| | ||| | ||| | ||||| || | |||||| ||||||||||||||| |
|
|
| T |
11564022 |
ttttgtcaatccaacaattgtctccttaaacaaacgcaaatccttatataagcaagccagaaccgacggtgctaaagcaataggttttcctctagcaaga |
11564121 |
T |
|
| Q |
176 |
tgaacagcaatagaaaacaaagaacttt---tcactaattctttacgaggaaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaattt |
272 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| || |||| |||||||||||||||| | | ||| |||| || |||||||||||||||||||| |
|
|
| T |
11564122 |
tgaacagcaataggaaacaaagaacttttgatcaacaagcttttatgaggaaaaacaaaaatggaaagccatgcagaaatgaatgcttcatgttcaattt |
11564221 |
T |
|
| Q |
273 |
cacta |
277 |
Q |
| |
|
|||| |
|
|
| T |
11564222 |
tacta |
11564226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 22652126 - 22652184
Alignment:
| Q |
223 |
aaaaacaaaaattggcaaccaagcagcaaggaatgcttcatgttcaatttcactacctt |
281 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22652126 |
aaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctt |
22652184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University