View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5549-Insertion-8 (Length: 396)

Name: NF5549-Insertion-8
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5549-Insertion-8
NF5549-Insertion-8
[»] chr8 (22 HSPs)
chr8 (6-396)||(14699125-14699515)
chr8 (331-395)||(8951403-8951467)
chr8 (339-395)||(14584106-14584162)
chr8 (333-396)||(51069-51132)
chr8 (333-396)||(2944246-2944309)
chr8 (333-396)||(8251907-8251970)
chr8 (333-396)||(13153928-13153991)
chr8 (333-396)||(18754144-18754207)
chr8 (333-396)||(28192149-28192212)
chr8 (333-396)||(32675731-32675794)
chr8 (333-367)||(28965730-28965764)
chr8 (217-255)||(33199556-33199594)
chr8 (332-370)||(33745895-33745933)
chr8 (330-396)||(38878718-38878784)
chr8 (226-264)||(43516263-43516301)
chr8 (333-370)||(1774342-1774379)
chr8 (330-395)||(7758884-7758949)
chr8 (333-370)||(28572046-28572083)
chr8 (333-370)||(28579639-28579676)
chr8 (333-370)||(34568490-34568527)
chr8 (333-370)||(39029178-39029215)
chr8 (339-367)||(8797034-8797062)
[»] chr5 (15 HSPs)
chr5 (333-396)||(3497774-3497837)
chr5 (325-396)||(22527684-22527755)
chr5 (333-370)||(25601060-25601097)
chr5 (332-396)||(9828392-9828456)
chr5 (339-395)||(13759422-13759478)
chr5 (336-396)||(32478141-32478201)
chr5 (333-396)||(1265949-1266012)
chr5 (333-396)||(6673202-6673265)
chr5 (333-396)||(16127259-16127322)
chr5 (333-396)||(27873319-27873382)
chr5 (333-396)||(40004383-40004446)
chr5 (333-370)||(14913648-14913685)
chr5 (333-370)||(26894873-26894910)
chr5 (333-369)||(7951562-7951598)
chr5 (333-369)||(34662204-34662240)
[»] chr4 (21 HSPs)
chr4 (330-396)||(5375531-5375597)
chr4 (330-370)||(44294786-44294826)
chr4 (339-370)||(468505-468536)
chr4 (333-396)||(1028518-1028581)
chr4 (333-396)||(4035825-4035888)
chr4 (333-396)||(5743633-5743696)
chr4 (331-370)||(9328240-9328279)
chr4 (333-396)||(34273193-34273256)
chr4 (333-396)||(45742780-45742843)
chr4 (333-396)||(47806860-47806923)
chr4 (339-370)||(50451225-50451256)
chr4 (332-370)||(33413517-33413555)
chr4 (339-369)||(36130091-36130121)
chr4 (339-369)||(37518010-37518040)
chr4 (339-369)||(37522226-37522256)
chr4 (333-395)||(52977982-52978044)
chr4 (333-370)||(30771528-30771565)
chr4 (333-370)||(32032993-32033030)
chr4 (330-366)||(4036089-4036125)
chr4 (339-367)||(23777805-23777833)
chr4 (333-369)||(26626003-26626039)
[»] chr7 (20 HSPs)
chr7 (333-370)||(36711298-36711335)
chr7 (332-396)||(21295150-21295214)
chr7 (330-370)||(32872375-32872415)
chr7 (332-396)||(41026070-41026134)
chr7 (332-396)||(41252335-41252399)
chr7 (333-396)||(29286011-29286074)
chr7 (339-370)||(32643757-32643788)
chr7 (333-396)||(32814433-32814496)
chr7 (333-396)||(33858840-33858903)
chr7 (333-396)||(38858298-38858361)
chr7 (333-396)||(39871587-39871650)
chr7 (333-395)||(9140508-9140570)
chr7 (328-370)||(36698131-36698173)
chr7 (333-395)||(39197718-39197780)
chr7 (332-370)||(48521028-48521066)
chr7 (333-370)||(19920563-19920600)
chr7 (333-370)||(26255096-26255133)
chr7 (326-366)||(28060981-28061021)
chr7 (333-369)||(40300230-40300266)
chr7 (326-370)||(44547419-44547463)
[»] chr6 (10 HSPs)
chr6 (333-370)||(925933-925970)
chr6 (339-396)||(6147389-6147446)
chr6 (217-269)||(9363119-9363171)
chr6 (333-396)||(12106038-12106101)
chr6 (333-396)||(30248647-30248710)
chr6 (333-396)||(34301806-34301869)
chr6 (333-370)||(231105-231142)
chr6 (333-370)||(4844400-4844437)
chr6 (333-370)||(8743188-8743225)
chr6 (333-370)||(29036126-29036163)
[»] chr3 (26 HSPs)
chr3 (333-370)||(26306607-26306644)
chr3 (332-396)||(9499471-9499535)
chr3 (333-396)||(7181350-7181413)
chr3 (333-396)||(14428610-14428673)
chr3 (333-396)||(21756486-21756549)
chr3 (333-396)||(22103903-22103966)
chr3 (333-396)||(25149096-25149159)
chr3 (333-396)||(30040991-30041054)
chr3 (333-396)||(32467425-32467488)
chr3 (333-396)||(35868057-35868120)
chr3 (333-396)||(37728713-37728776)
chr3 (333-396)||(43868103-43868166)
chr3 (333-396)||(44543782-44543845)
chr3 (333-396)||(45252773-45252836)
chr3 (333-367)||(9780244-9780278)
chr3 (330-396)||(12683156-12683222)
chr3 (333-395)||(26593740-26593802)
chr3 (330-396)||(47066931-47066997)
chr3 (333-370)||(1111648-1111685)
chr3 (333-370)||(10220933-10220970)
chr3 (333-370)||(12050392-12050429)
chr3 (329-366)||(31531415-31531452)
chr3 (333-370)||(46049986-46050023)
chr3 (333-370)||(51284062-51284099)
chr3 (333-369)||(4024052-4024088)
chr3 (226-258)||(18088068-18088100)
[»] chr1 (26 HSPs)
chr1 (333-370)||(14090238-14090275)
chr1 (332-396)||(1039355-1039419)
chr1 (332-396)||(1046261-1046325)
chr1 (333-396)||(4102688-4102751)
chr1 (333-396)||(11741397-11741460)
chr1 (333-396)||(15811206-15811269)
chr1 (333-396)||(23541979-23542042)
chr1 (333-396)||(30290265-30290328)
chr1 (333-396)||(36694854-36694917)
chr1 (333-396)||(36710955-36711018)
chr1 (333-396)||(37951923-37951986)
chr1 (333-396)||(39497433-39497496)
chr1 (333-396)||(45039412-45039475)
chr1 (333-396)||(46075841-46075904)
chr1 (333-396)||(49907021-49907084)
chr1 (333-396)||(52431148-52431211)
chr1 (217-303)||(9168367-9168453)
chr1 (334-396)||(30289836-30289898)
chr1 (333-370)||(943637-943674)
chr1 (226-263)||(28665118-28665155)
chr1 (339-396)||(34931085-34931142)
chr1 (333-370)||(39363194-39363231)
chr1 (333-370)||(44649629-44649666)
chr1 (339-367)||(11353065-11353093)
chr1 (339-367)||(15892566-15892594)
chr1 (330-366)||(23542243-23542279)
[»] chr2 (15 HSPs)
chr2 (332-396)||(36131002-36131066)
chr2 (333-396)||(2438225-2438288)
chr2 (333-396)||(8716866-8716929)
chr2 (333-396)||(16669626-16669689)
chr2 (327-370)||(20252204-20252247)
chr2 (333-396)||(27560206-27560269)
chr2 (333-396)||(34883822-34883885)
chr2 (333-396)||(40607702-40607765)
chr2 (333-395)||(7491844-7491906)
chr2 (333-370)||(11201683-11201720)
chr2 (333-370)||(17408294-17408331)
chr2 (226-263)||(29408976-29409013)
chr2 (333-370)||(34062665-34062702)
chr2 (333-370)||(41450516-41450553)
chr2 (330-370)||(2060313-2060353)
[»] scaffold0121 (1 HSPs)
scaffold0121 (328-370)||(24630-24672)
[»] scaffold0029 (1 HSPs)
scaffold0029 (324-370)||(51682-51728)
[»] scaffold0012 (1 HSPs)
scaffold0012 (333-395)||(47640-47702)
[»] scaffold0604 (1 HSPs)
scaffold0604 (333-370)||(3782-3819)
[»] scaffold0122 (1 HSPs)
scaffold0122 (333-370)||(12065-12102)
[»] scaffold0009 (1 HSPs)
scaffold0009 (339-396)||(246462-246519)
[»] scaffold0008 (1 HSPs)
scaffold0008 (333-370)||(259122-259159)


Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 6 - 396
Target Start/End: Original strand, 14699125 - 14699515
Alignment:
Q  6 caagtatattctctgattatctgagggcacgtgagaggtaaataatgcatgcaattccacccaagagaaggtagatccaagaaactaataaggaaggtac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14699125 caagtatattctctgattatctgagggcacgtgagaggtaaataatgcatgcaattccacccaagagaaggtagatccaagaaactaataaggaaggtac 14699224  T
Q  106 atagcaattcagcygaaatcacggttcttgttattttcaagctagctaagtttggtttgtccatactctagttgtctatattgcaaaatatttacctaaa 205  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14699225 atagcaattcagctgaaatcacggttcttgttattttcaagctagctaagtttggtttgtccatactctagttgtctatattgcaaaatatttacctaaa 14699324  T
Q  206 gaccataccgaatgttaatgatacaaatacaaaatagagaaagagagaataggaacaataatgtaagttagggttttataaaatattaatatcttgatgt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14699325 gaccataccgaatgttaatgatacaaatacaaaatagagaaagagagaataggaacaataatgtaagttagggttttataaaatattaatatcttgatgt 14699424  T
Q  306 taaaaacggttacaagataataatatgtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||||||||||||||||||| ||||||||  |||||| ||||||||||||| |||||||||||        ||||||||||||||||||    
T  14699425 taaaaacggttacaagataatactatgtacttcctccgtccctaattataagatccttttgagaattttttttgtccctttttataagacc 14699515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 8951467 - 8951403
Alignment:
Q  331 tgtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagac 395  Q
    ||||||| |||||| |||||||||||||||||||||||||        |||||||||||||||||    
T  8951467 tgtactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagac 8951403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 14584162 - 14584106
Alignment:
Q  339 ctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagac 395  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  14584162 ctccgttcctaattataagacccttttgagaattttttttgtccctttttataagac 14584106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 51132 - 51069
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  51132 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 51069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 2944309 - 2944246
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  2944309 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 2944246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 8251970 - 8251907
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  8251970 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 8251907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 13153928 - 13153991
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  13153928 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 13153991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 18754144 - 18754207
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  18754144 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 18754207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 28192212 - 28192149
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  28192212 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 28192149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 32675794 - 32675731
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  32675794 tactccctccgtccctaattataagacccttttgagaaaaaaatttgtccctttttataagacc 32675731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 367
Target Start/End: Complemental strand, 28965764 - 28965730
Alignment:
Q  333 tactctctccgttcctaattataagacccttttga 367  Q
    |||||||||||| ||||||||||||||||||||||    
T  28965764 tactctctccgtccctaattataagacccttttga 28965730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 33199594 - 33199556
Alignment:
Q  217 atgttaatgatacaaatacaaaatagagaaagagagaat 255  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  33199594 atgttaataatacaaatacaaaataaagaaagagagaat 33199556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 33745933 - 33745895
Alignment:
Q  332 gtactctctccgttcctaattataagacccttttgagaa 370  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  33745933 gtactccctccgttcctaattataagatccttttgagaa 33745895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 396
Target Start/End: Original strand, 38878718 - 38878784
Alignment:
Q  330 atgtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||||| ||||||  ||||||||||||||||||||||||        ||||||||||||||||||    
T  38878718 atgtactccctccgtctctaattataagacccttttgagaattttttttgtccctttttataagacc 38878784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 43516301 - 43516263
Alignment:
Q  226 atacaaatacaaaatagagaaagagagaataggaacaat 264  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  43516301 atacatatacaaaatagagaaacagagaataggaacaat 43516263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 1774342 - 1774379
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  1774342 tactccctccgtccctaattataagacccttttgagaa 1774379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 7758949 - 7758884
Alignment:
Q  330 atgtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagac 395  Q
    |||||||| |||||| |||||||||||||| ||||||||||        |||||||||||||||||    
T  7758949 atgtactccctccgtccctaattataagacacttttgagaatattttttgtccctttttataagac 7758884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 28572046 - 28572083
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  28572046 tactccctccgtccctaattataagacccttttgagaa 28572083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 28579639 - 28579676
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  28579639 tactccctccgtccctaattataagacccttttgagaa 28579676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 34568490 - 34568527
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  34568490 tactccctccgtccctaattataagacccttttgagaa 34568527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 39029178 - 39029215
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  39029178 tactccctccgtccctaattataagacccttttgagaa 39029215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 367
Target Start/End: Original strand, 8797034 - 8797062
Alignment:
Q  339 ctccgttcctaattataagacccttttga 367  Q
    |||||||||||||||||||||||||||||    
T  8797034 ctccgttcctaattataagacccttttga 8797062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 3497837 - 3497774
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| ||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  3497837 tactccctccgttcctaattataagacccttttgagaaatttttttgtccctttttataagacc 3497774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 325 - 396
Target Start/End: Original strand, 22527684 - 22527755
Alignment:
Q  325 ataatatgtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  22527684 ataatatatactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 22527755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 25601097 - 25601060
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  25601097 tactccctccgttcctaattataagacccttttgagaa 25601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 396
Target Start/End: Original strand, 9828392 - 9828456
Alignment:
Q  332 gtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  9828392 gtactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 9828456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 13759478 - 13759422
Alignment:
Q  339 ctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagac 395  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  13759478 ctccgttcctaattataagacccttttgagaattttttttgtccctttttataagac 13759422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 396
Target Start/End: Original strand, 32478141 - 32478201
Alignment:
Q  336 tctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  32478141 tctctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 32478201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 1265949 - 1266012
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  1265949 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 1266012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 6673265 - 6673202
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  6673265 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 6673202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 16127259 - 16127322
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  16127259 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 16127322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 27873382 - 27873319
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||| ||||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  27873382 tactatctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 27873319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 40004446 - 40004383
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  40004446 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 40004383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 14913648 - 14913685
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  14913648 tactccctccgtccctaattataagacccttttgagaa 14913685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 26894910 - 26894873
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  26894910 tactccctccgtccctaattataagacccttttgagaa 26894873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 7951562 - 7951598
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgaga 369  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  7951562 tactccctccgtccctaattataagacccttttgaga 7951598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 34662204 - 34662240
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgaga 369  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  34662204 tactccctccgtccctaattataagacccttttgaga 34662240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 5375597 - 5375531
Alignment:
Q  330 atgtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  5375597 atgtactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 5375531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 44294786 - 44294826
Alignment:
Q  330 atgtactctctccgttcctaattataagacccttttgagaa 370  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  44294786 atgtactccctccgtccctaattataagacccttttgagaa 44294826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 339 - 370
Target Start/End: Complemental strand, 468536 - 468505
Alignment:
Q  339 ctccgttcctaattataagacccttttgagaa 370  Q
    ||||||||||||||||||||||||||||||||    
T  468536 ctccgttcctaattataagacccttttgagaa 468505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 1028518 - 1028581
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| ||||||||||||||||||||||||||||| ||        ||||||||||||||||||    
T  1028518 tactccctccgttcctaattataagacccttttgaaaaaaaaaattgtccctttttataagacc 1028581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 4035825 - 4035888
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  4035825 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 4035888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 5743696 - 5743633
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  5743696 tactccctccgtccctaattataagacccttttgagaaaaaaatttgtccctttttataagacc 5743633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 331 - 370
Target Start/End: Complemental strand, 9328279 - 9328240
Alignment:
Q  331 tgtactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  9328279 tgtactccctccgtccctaattataagacccttttgagaa 9328240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 34273256 - 34273193
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  34273256 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 34273193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 45742843 - 45742780
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  45742843 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 45742780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 47806860 - 47806923
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  47806860 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 47806923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 339 - 370
Target Start/End: Complemental strand, 50451256 - 50451225
Alignment:
Q  339 ctccgttcctaattataagacccttttgagaa 370  Q
    ||||||||||||||||||||||||||||||||    
T  50451256 ctccgttcctaattataagacccttttgagaa 50451225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 33413517 - 33413555
Alignment:
Q  332 gtactctctccgttcctaattataagacccttttgagaa 370  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  33413517 gtactccctccgtccctaattataagacccttttgagaa 33413555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 369
Target Start/End: Complemental strand, 36130121 - 36130091
Alignment:
Q  339 ctccgttcctaattataagacccttttgaga 369  Q
    |||||||||||||||||||||||||||||||    
T  36130121 ctccgttcctaattataagacccttttgaga 36130091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 369
Target Start/End: Original strand, 37518010 - 37518040
Alignment:
Q  339 ctccgttcctaattataagacccttttgaga 369  Q
    |||||||||||||||||||||||||||||||    
T  37518010 ctccgttcctaattataagacccttttgaga 37518040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 369
Target Start/End: Original strand, 37522226 - 37522256
Alignment:
Q  339 ctccgttcctaattataagacccttttgaga 369  Q
    |||||||||||||||||||||||||||||||    
T  37522226 ctccgttcctaattataagacccttttgaga 37522256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 52977982 - 52978044
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagac 395  Q
    ||||| |||||| |||||||||||||||||||||||||        |||||||||||||||||    
T  52977982 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagac 52978044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 30771528 - 30771565
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  30771528 tactccctccgtccctaattataagacccttttgagaa 30771565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 32033030 - 32032993
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  32033030 tactccctccgtccctaattataagacccttttgagaa 32032993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 4036125 - 4036089
Alignment:
Q  330 atgtactctctccgttcctaattataagacccttttg 366  Q
    |||||||| |||||| |||||||||||||||||||||    
T  4036125 atgtactccctccgtccctaattataagacccttttg 4036089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 367
Target Start/End: Complemental strand, 23777833 - 23777805
Alignment:
Q  339 ctccgttcctaattataagacccttttga 367  Q
    |||||||||||||||||||||||||||||    
T  23777833 ctccgttcctaattataagacccttttga 23777805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 26626039 - 26626003
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgaga 369  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  26626039 tactccctccgtccctaattataagacccttttgaga 26626003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 36711335 - 36711298
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  36711335 tactccctccgttcctaattataagacccttttgagaa 36711298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 396
Target Start/End: Original strand, 21295150 - 21295214
Alignment:
Q  332 gtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  21295150 gtactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 21295214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 32872415 - 32872375
Alignment:
Q  330 atgtactctctccgttcctaattataagacccttttgagaa 370  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  32872415 atgtactccctccgtccctaattataagacccttttgagaa 32872375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 41026134 - 41026070
Alignment:
Q  332 gtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  41026134 gtactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 41026070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 41252399 - 41252335
Alignment:
Q  332 gtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  41252399 gtactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 41252335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 29286074 - 29286011
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  29286074 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 29286011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 339 - 370
Target Start/End: Complemental strand, 32643788 - 32643757
Alignment:
Q  339 ctccgttcctaattataagacccttttgagaa 370  Q
    ||||||||||||||||||||||||||||||||    
T  32643788 ctccgttcctaattataagacccttttgagaa 32643757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 32814433 - 32814496
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  32814433 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 32814496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 33858903 - 33858840
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  33858903 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 33858840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 38858298 - 38858361
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  38858298 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 38858361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 39871650 - 39871587
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  39871650 tactccctccgtccctaattataagacccttttgagaaatttttttgtccctttttataagacc 39871587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 9140570 - 9140508
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagac 395  Q
    |||| ||||||| |||||||||||||||||||||||||        |||||||||||||||||    
T  9140570 tactatctccgtccctaattataagacccttttgagaattttttttgtccctttttataagac 9140508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 36698173 - 36698131
Alignment:
Q  328 atatgtactctctccgttcctaattataagacccttttgagaa 370  Q
    |||| ||||| |||||| |||||||||||||||||||||||||    
T  36698173 atatatactccctccgtccctaattataagacccttttgagaa 36698131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 39197718 - 39197780
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagac 395  Q
    ||||| |||||| |||||||||||||||||||||||||        |||||||||||||||||    
T  39197718 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagac 39197780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 48521028 - 48521066
Alignment:
Q  332 gtactctctccgttcctaattataagacccttttgagaa 370  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  48521028 gtactccctccgtccctaattataagacccttttgagaa 48521066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 19920563 - 19920600
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  19920563 tactccctccgtccctaattataagacccttttgagaa 19920600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 26255096 - 26255133
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  26255096 tactccctccgtccctaattataagacccttttgagaa 26255133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 28061021 - 28060981
Alignment:
Q  326 taatatgtactctctccgttcctaattataagacccttttg 366  Q
    |||||| ||||| |||||| |||||||||||||||||||||    
T  28061021 taatatatactccctccgtccctaattataagacccttttg 28060981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 40300230 - 40300266
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgaga 369  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  40300230 tactccctccgtccctaattataagacccttttgaga 40300266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 44547419 - 44547463
Alignment:
Q  326 taatatgtactctctccgttcctaattataagacccttttgagaa 370  Q
    |||||| ||||| |||||| ||||||||||||||| |||||||||    
T  44547419 taatatatactccctccgtccctaattataagacctttttgagaa 44547463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 925970 - 925933
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  925970 tactccctccgttcctaattataagacccttttgagaa 925933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 6147389 - 6147446
Alignment:
Q  339 ctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  6147389 ctccgttcctaattataagacccttttgagaatttttttggtccctttttataagacc 6147446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 9363119 - 9363171
Alignment:
Q  217 atgttaatgatacaaatacaaaatagagaaagagagaataggaacaataatgt 269  Q
    |||||||  ||||||||||||||| | |||||||||||||||||||| |||||    
T  9363119 atgttaacaatacaaatacaaaatcgtgaaagagagaataggaacaacaatgt 9363171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 12106101 - 12106038
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||||||||| ||||||||||||||| |||||||||        ||||||||||||||||||    
T  12106101 tactctctccgtccctaattataagacctttttgagaattttttttgtccctttttataagacc 12106038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 30248647 - 30248710
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  30248647 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 30248710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 34301869 - 34301806
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  34301869 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 34301806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 231142 - 231105
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  231142 tactccctccgtccctaattataagacccttttgagaa 231105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 4844400 - 4844437
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  4844400 tactccctccgtccctaattataagacccttttgagaa 4844437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 8743188 - 8743225
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  8743188 tactccctccgtccctaattataagacccttttgagaa 8743225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 29036126 - 29036163
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  29036126 tactccctccgttcctaattataagatccttttgagaa 29036163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 26306644 - 26306607
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  26306644 tactccctccgttcctaattataagacccttttgagaa 26306607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 9499535 - 9499471
Alignment:
Q  332 gtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  9499535 gtactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 9499471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 7181350 - 7181413
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  7181350 tactccctccgtccctaattataagacccttttgagaaatttttttgtccctttttataagacc 7181413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 14428610 - 14428673
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  14428610 tactccctccgtccctaattataagacccttttgagaaatttttttgtccctttttataagacc 14428673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 21756486 - 21756549
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  21756486 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 21756549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 22103966 - 22103903
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  22103966 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 22103903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 25149159 - 25149096
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  25149159 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 25149096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 30041054 - 30040991
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| ||||||||||||||||||||| ||||||||||        ||||||||||||||||||    
T  30041054 tactccctccgttcctaattataagactcttttgagaattttttttgtccctttttataagacc 30040991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 32467425 - 32467488
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||||||||| | |||||||||||||||||||||||        ||||||||||||||||||    
T  32467425 tactctctccgtccttaattataagacccttttgagaattttttttgtccctttttataagacc 32467488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 35868120 - 35868057
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  35868120 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 35868057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 37728713 - 37728776
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  37728713 tactccctccgtccctaattataagacccttttgagaatatttgttgtccctttttataagacc 37728776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 43868103 - 43868166
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  43868103 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 43868166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 44543782 - 44543845
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  44543782 tactccctccgtccctaattataagacccttttgagaatttcttttgtccctttttataagacc 44543845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 45252773 - 45252836
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  45252773 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 45252836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 367
Target Start/End: Complemental strand, 9780278 - 9780244
Alignment:
Q  333 tactctctccgttcctaattataagacccttttga 367  Q
    |||||||||||| ||||||||||||||||||||||    
T  9780278 tactctctccgtccctaattataagacccttttga 9780244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 12683222 - 12683156
Alignment:
Q  330 atgtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||||| |||||| ||||||||||||||| |||||||||        ||||||||||||||||||    
T  12683222 atgtactccctccgtccctaattataagaccattttgagaatttttttagtccctttttataagacc 12683156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 26593802 - 26593740
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagac 395  Q
    ||||| |||||| |||||||||||||||||||||||||        |||||||||||||||||    
T  26593802 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagac 26593740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 396
Target Start/End: Original strand, 47066931 - 47066997
Alignment:
Q  330 atgtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||||  |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  47066931 atgtacttcctccgtccctaattataagacccttttgagaatattttttgtccctttttataagacc 47066997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 1111685 - 1111648
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  1111685 tactatctccgtccctaattataagacccttttgagaa 1111648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 10220933 - 10220970
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  10220933 tactccctccgtccctaattataagacccttttgagaa 10220970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 12050429 - 12050392
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  12050429 tactccctccgtccctaattataagacccttttgagaa 12050392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 31531452 - 31531415
Alignment:
Q  329 tatgtactctctccgttcctaattataagacccttttg 366  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  31531452 tatgtactccctccgtccctaattataagacccttttg 31531415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 46050023 - 46049986
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  46050023 tactccctccgtccctaattataagacccttttgagaa 46049986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 51284099 - 51284062
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  51284099 tactccctccgtccctaattataagacccttttgagaa 51284062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 4024052 - 4024088
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgaga 369  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  4024052 tactccctccgtccctaattataagacccttttgaga 4024088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 18088068 - 18088100
Alignment:
Q  226 atacaaatacaaaatagagaaagagagaatagg 258  Q
    |||| ||||||||||||||||||||||||||||    
T  18088068 ataccaatacaaaatagagaaagagagaatagg 18088100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 14090275 - 14090238
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  14090275 tactctctccgttcctatttataagacccttttgagaa 14090238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 1039419 - 1039355
Alignment:
Q  332 gtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  1039419 gtactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 1039355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 1046325 - 1046261
Alignment:
Q  332 gtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  1046325 gtactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 1046261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 4102751 - 4102688
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  4102751 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 4102688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 11741397 - 11741460
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  11741397 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 11741460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 15811269 - 15811206
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  15811269 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 15811206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 23541979 - 23542042
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  23541979 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 23542042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 30290265 - 30290328
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  30290265 tactccctccgtccctaattataagacccttttgagaaatttttttgtccctttttataagacc 30290328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 36694854 - 36694917
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  36694854 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 36694917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 36710955 - 36711018
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  36710955 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 36711018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 37951986 - 37951923
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  37951986 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 37951923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 39497433 - 39497496
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  39497433 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 39497496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 45039412 - 45039475
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  45039412 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 45039475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 46075904 - 46075841
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  46075904 tactccctccgtccctaattataagacccttttgagaatattttttgtccctttttataagacc 46075841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 49907021 - 49907084
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  49907021 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 49907084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 52431211 - 52431148
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  52431211 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 52431148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 303
Target Start/End: Original strand, 9168367 - 9168453
Alignment:
Q  217 atgttaatgatacaaatacaaaatagagaaagagagaataggaacaataatgtaagttagggttttataaaatattaatatcttgat 303  Q
    |||||||  ||||| ||||||||||||||||||||||||| || ||| || |   | |||||||| ||||||||| |||| ||||||    
T  9168367 atgttaacaatacatatacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgat 9168453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 396
Target Start/End: Complemental strand, 30289898 - 30289836
Alignment:
Q  334 actctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  30289898 actccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 30289836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 943674 - 943637
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  943674 tactccctccgtccctaattataagacccttttgagaa 943637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 28665155 - 28665118
Alignment:
Q  226 atacaaatacaaaatagagaaagagagaataggaacaa 263  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  28665155 atacagatacaaaatggagaaagagagaataggaacaa 28665118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 34931085 - 34931142
Alignment:
Q  339 ctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||||||||||||||||||||||||||| ||        ||||||||||||||||||    
T  34931085 ctccgttcctaattataagacccttttgaaaaaaaaaattgtccctttttataagacc 34931142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 39363231 - 39363194
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  39363231 tactccctccgtccctaattataagacccttttgagaa 39363194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 44649629 - 44649666
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  44649629 tactccctccgtccctaattataagacccttttgagaa 44649666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 367
Target Start/End: Complemental strand, 11353093 - 11353065
Alignment:
Q  339 ctccgttcctaattataagacccttttga 367  Q
    |||||||||||||||||||||||||||||    
T  11353093 ctccgttcctaattataagacccttttga 11353065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 367
Target Start/End: Complemental strand, 15892594 - 15892566
Alignment:
Q  339 ctccgttcctaattataagacccttttga 367  Q
    |||||||||||||||||||||||||||||    
T  15892594 ctccgttcctaattataagacccttttga 15892566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 23542279 - 23542243
Alignment:
Q  330 atgtactctctccgttcctaattataagacccttttg 366  Q
    |||||||| |||||| |||||||||||||||||||||    
T  23542279 atgtactccctccgtccctaattataagacccttttg 23542243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 36131066 - 36131002
Alignment:
Q  332 gtactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    |||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  36131066 gtactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 36131002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 2438225 - 2438288
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  2438225 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 2438288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 8716929 - 8716866
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  8716929 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 8716866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 16669626 - 16669689
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||||| |||||||||||||||||||||||        ||||||||||||||||||    
T  16669626 tactccctccgttcttaattataagacccttttgagaattatttttgtccctttttataagacc 16669689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 370
Target Start/End: Original strand, 20252204 - 20252247
Alignment:
Q  327 aatatgtactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||    
T  20252204 aatatatactccctccgtccctaattataagacccttttgagaa 20252247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 27560206 - 27560269
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  27560206 tactccctccgtccctaattataagacccttttgagaaaaatttttgtccctttttataagacc 27560269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 34883885 - 34883822
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  34883885 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacc 34883822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 40607702 - 40607765
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||| |||||| |||||||||||||||||||||||||        ||||||||||||||||||    
T  40607702 tactccctccgtccctaattataagacccttttgagaaatttttttgtccctttttataagacc 40607765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 7491844 - 7491906
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagac 395  Q
    ||||| |||||| |||||||||||||||||||||||||        |||||||||||||||||    
T  7491844 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagac 7491906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 11201683 - 11201720
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  11201683 tactccctccgtccctaattataagacccttttgagaa 11201720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 17408331 - 17408294
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  17408331 tactccctccgtccctaattataagacccttttgagaa 17408294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 29408976 - 29409013
Alignment:
Q  226 atacaaatacaaaatagagaaagagagaataggaacaa 263  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  29408976 atacatatacaaaatagagaaagagagaataagaacaa 29409013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 34062702 - 34062665
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  34062702 tactccctccgtccctaattataagacccttttgagaa 34062665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 41450516 - 41450553
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  41450516 tactccctccgtccctaattataagacccttttgagaa 41450553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 2060313 - 2060353
Alignment:
Q  330 atgtactctctccgttcctaattataagacccttttgagaa 370  Q
    |||||||  |||||| |||||||||||||||||||||||||    
T  2060313 atgtactacctccgtccctaattataagacccttttgagaa 2060353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 24672 - 24630
Alignment:
Q  328 atatgtactctctccgttcctaattataagacccttttgagaa 370  Q
    |||| ||||| |||||||||||||||||||| |||||||||||    
T  24672 atatatactccctccgttcctaattataagatccttttgagaa 24630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 51728 - 51682
Alignment:
Q  324 aataatatgtactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| || ||||| |||||| |||||||||||||||||||||||||    
T  51728 aataacatatactccctccgtccctaattataagacccttttgagaa 51682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 47640 - 47702
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagac 395  Q
    ||||| |||||| |||||||||||||||||||||||||        |||||||||||||||||    
T  47640 tactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagac 47702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 3819 - 3782
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  3819 tactccctccgtccctaattataagacccttttgagaa 3782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 12065 - 12102
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  12065 tactccctccgtccctaattataagacccttttgagaa 12102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 246462 - 246519
Alignment:
Q  339 ctccgttcctaattataagacccttttgagaannnnnnnngtccctttttataagacc 396  Q
    ||||||||||||||||||||||||||||| ||        ||||||||||||||||||    
T  246462 ctccgttcctaattataagacccttttgaaaaaataatttgtccctttttataagacc 246519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Complemental strand, 259159 - 259122
Alignment:
Q  333 tactctctccgttcctaattataagacccttttgagaa 370  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  259159 tactccctccgtccctaattataagacccttttgagaa 259122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University