View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5549_high_15 (Length: 240)

Name: NF5549_high_15
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5549_high_15
NF5549_high_15
[»] chr8 (5 HSPs)
chr8 (16-240)||(12195470-12195694)
chr8 (16-240)||(12439898-12440122)
chr8 (16-234)||(12200489-12200712)
chr8 (16-234)||(12444917-12445140)
chr8 (51-168)||(4962245-4962366)
[»] chr4 (11 HSPs)
chr4 (42-159)||(7877970-7878090)
chr4 (51-167)||(48898959-48899075)
chr4 (111-224)||(7765804-7765914)
chr4 (117-159)||(7773620-7773662)
chr4 (117-167)||(7908553-7908603)
chr4 (111-167)||(7786680-7786736)
chr4 (124-168)||(37826795-37826839)
chr4 (51-92)||(7765936-7765977)
chr4 (197-226)||(50250640-50250669)
chr4 (50-87)||(50669384-50669421)
chr4 (51-87)||(37826716-37826752)
[»] chr7 (1 HSPs)
chr7 (109-168)||(48884048-48884107)
[»] chr6 (1 HSPs)
chr6 (114-168)||(21979420-21979474)
[»] chr5 (2 HSPs)
chr5 (16-82)||(9120067-9120133)
chr5 (16-80)||(179364-179428)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 12195694 - 12195470
Alignment:
Q  16 catatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaaccagaatgctctggaccatggtcgtaatcat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12195694 catatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaaccataatgctctggaccatggtcgtaatcat 12195595  T
Q  116 ctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaatagcttccaatggtattttatgataaggagaagccaaccaatgaatagc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12195594 ctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaataacttccaatggtattttatgataaggagaagccaaccaatgaatagc 12195495  T
Q  216 cccattaaagaatgatcctcctgct 240  Q
    |||||||||||||||||||||||||    
T  12195494 cccattaaagaatgatcctcctgct 12195470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 12440122 - 12439898
Alignment:
Q  16 catatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaaccagaatgctctggaccatggtcgtaatcat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12440122 catatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaaccataatgctctggaccatggtcgtaatcat 12440023  T
Q  116 ctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaatagcttccaatggtattttatgataaggagaagccaaccaatgaatagc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12440022 ctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaataacttccaatggtattttatgataaggagaagccaaccaatgaatagc 12439923  T
Q  216 cccattaaagaatgatcctcctgct 240  Q
    |||||||||||||||||||||||||    
T  12439922 cccattaaagaatgatcctcctgct 12439898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 12200712 - 12200489
Alignment:
Q  16 catatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaaccagaatgctctggaccatggtcgtaatcat 115  Q
    ||||||||||  ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| |    ||||||||| | ||||||    
T  12200712 catatttcaagcgtctgattatcaaaattcatattccatagactaagaaattctccaaatacccacaaaccataatacataagaccatggttgaaatcat 12200613  T
Q  116 ctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaatagcttccaatggta---ttttatgataaggagaagccaaccaatgaat 212  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||     | ||||||| ||||||  |||||||||||    
T  12200612 ctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaataacttccaatggtaaaccatgatgataatgagaagttaaccaatgaat 12200513  T
Q  213 a--gccccattaaagaatgatcct 234  Q
    |   |||||||||||||| |||||    
T  12200512 aacaccccattaaagaataatcct 12200489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 12445140 - 12444917
Alignment:
Q  16 catatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaaccagaatgctctggaccatggtcgtaatcat 115  Q
    ||||||||||  ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| |    ||||||||| | ||||||    
T  12445140 catatttcaagcgtctgattatcaaaattcatattccatagactaagaaattctccaaatacccacaaaccataatacataagaccatggttgaaatcat 12445041  T
Q  116 ctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaatagcttccaatggta---ttttatgataaggagaagccaaccaatgaat 212  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||     | ||||||| ||||||  |||||||||||    
T  12445040 ctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaataacttccaatggtaaaccatgatgataatgagaagttaaccaatgaat 12444941  T
Q  213 a--gccccattaaagaatgatcct 234  Q
    |   |||||||||||||| |||||    
T  12444940 aacaccccattaaagaataatcct 12444917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 4962245 - 4962366
Alignment:
Q  51 ccatagactgagaaattttccaaatacccacaaaccagaa--tgct--ctggaccatggtcgtaatcatctggaagaggtatctctaacaatttcctttc 146  Q
    ||||||||||||||||| ||||||||||||||||||| ||  | |   | ||  ||| |||  ||||||  |||||||| ||||||||||||||||||||    
T  4962245 ccatagactgagaaattctccaaatacccacaaaccataacttacagacaggttcatagtcaaaatcattgggaagaggcatctctaacaatttcctttc 4962344  T
Q  147 cattaaatcaaagacaacaata 168  Q
    ||||||||||||||||| ||||    
T  4962345 cattaaatcaaagacaataata 4962366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 7878090 - 7877970
Alignment:
Q  42 attcatattccatagactgagaaattttccaaatacccacaaaccagaatgctc---tggaccatggtcgtaatcatctggaagaggtatctctaacaat 138  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||||  |   ||  | ||||||   || || ||||||||| ||||| ||||||    
T  7878090 attcatagcccatagactgagaaattctccaaatacccacaaaccagaatgtactaatgctctatggtcaacattatttggaagaggcatctcaaacaat 7877991  T
Q  139 ttcctttccattaaatcaaag 159  Q
    ||| |||||||||||||||||    
T  7877990 ttcttttccattaaatcaaag 7877970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 48899075 - 48898959
Alignment:
Q  51 ccatagactgagaaattttccaaatacccacaaaccagaatgctctggaccatggtcgtaatcatctggaagaggtatctctaacaatttcctttccatt 150  Q
    ||||| ||||| ||| | |||||| |||||||||||| ||| ||  |||  ||| ||  ||||||||||| |||  |||||||||| |||||||||| ||    
T  48899075 ccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatgttccaaatcatctggaggagacatctctaacagtttcctttccgtt 48898976  T
Q  151 aaatcaaagacaacaat 167  Q
    ||||||||| |||||||    
T  48898975 aaatcaaaggcaacaat 48898959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 7765914 - 7765804
Alignment:
Q  111 atcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaatagcttccaatggtattttatgataaggagaagccaaccaatga 210  Q
    ||||| ||||||||| ||||| |||||| |||||||| ||||||||||| |||||||  | ||||| | ||   ||| || | | |||| ||||||||||    
T  7765914 atcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagccaacaatgacatccaaagcta---tatcatgacgcgaagacaaccaatga 7765818  T
Q  211 atagccccattaaa 224  Q
    ||||||||||||||    
T  7765817 atagccccattaaa 7765804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 7773620 - 7773662
Alignment:
Q  117 tggaagaggtatctctaacaatttcctttccattaaatcaaag 159  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  7773620 tggaagaggcatctcaaacaatttcctttccattaaatcaaag 7773662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 7908603 - 7908553
Alignment:
Q  117 tggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaat 167  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||| |||||||    
T  7908603 tggaataggtatctcaaacaacttcctttccattaaatcaaaggcaacaat 7908553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 7786736 - 7786680
Alignment:
Q  111 atcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaat 167  Q
    ||||| ||||||||| ||||| |||||| |||||||| ||||||||||| |||||||    
T  7786736 atcatttggaagaggcatctcaaacaatatcctttccgttaaatcaaagccaacaat 7786680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 37826795 - 37826839
Alignment:
Q  124 ggtatctctaacaatttcctttccattaaatcaaagacaacaata 168  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||||    
T  37826795 ggtatctctaacagtttcctttccattaaattaaaggcaacaata 37826839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 7765977 - 7765936
Alignment:
Q  51 ccatagactgagaaattttccaaatacccacaaaccagaatg 92  Q
    ||||| ||||||||||| |||| |||||||||||||||||||    
T  7765977 ccatatactgagaaattctccagatacccacaaaccagaatg 7765936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 50250640 - 50250669
Alignment:
Q  197 aagccaaccaatgaatagccccattaaaga 226  Q
    ||||||||||||||||||||||||||||||    
T  50250640 aagccaaccaatgaatagccccattaaaga 50250669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 50669421 - 50669384
Alignment:
Q  50 tccatagactgagaaattttccaaatacccacaaacca 87  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  50669421 tccaaagactgagaaattctccaaatacccacaaacca 50669384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 37826716 - 37826752
Alignment:
Q  51 ccatagactgagaaattttccaaatacccacaaacca 87  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  37826716 ccatagactaagaaattctccaaatacccacaaacca 37826752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 48884107 - 48884048
Alignment:
Q  109 taatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaata 168  Q
    ||||||||||| ||| | |||||||||| |||| ||||||||||||||||| || |||||    
T  48884107 taatcatctgggagacggatctctaacagtttcttttccattaaatcaaaggcagcaata 48884048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 21979420 - 21979474
Alignment:
Q  114 atctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaata 168  Q
    |||||||||||| ||||| || | ||||||||| |||||||||||| ||||||||    
T  21979420 atctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaata 21979474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 9120133 - 9120067
Alignment:
Q  16 catatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccaca 82  Q
    ||||||||||||||   |||| |||||| ||||  ||||| ||||||||||| ||||||||||||||    
T  9120133 catatttcaactgtatcattagcaaaatccatagcccatatactgagaaattctccaaatacccaca 9120067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 179428 - 179364
Alignment:
Q  16 catatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaataccca 80  Q
    ||||||||||||||   ||||||| ||| ||||  ||||| ||||||||||| ||||||||||||    
T  179428 catatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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