View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5549_high_3 (Length: 651)

Name: NF5549_high_3
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5549_high_3
NF5549_high_3
[»] chr8 (8 HSPs)
chr8 (11-651)||(12194835-12195474)
chr8 (11-651)||(12439263-12439902)
chr8 (13-629)||(12199843-12200459)
chr8 (13-629)||(12444271-12444887)
chr8 (92-182)||(15348477-15348567)
chr8 (486-601)||(15348865-15348980)
chr8 (103-178)||(4032293-4032368)
chr8 (82-110)||(41311566-41311594)
[»] chr4 (42 HSPs)
chr4 (68-182)||(7770995-7771109)
chr4 (49-182)||(7904604-7904737)
chr4 (68-182)||(7238093-7238207)
chr4 (81-182)||(7789693-7789794)
chr4 (75-182)||(7765219-7765326)
chr4 (68-182)||(45372430-45372544)
chr4 (57-182)||(7877300-7877425)
chr4 (91-181)||(7822583-7822673)
chr4 (68-182)||(48862832-48862949)
chr4 (57-182)||(7774202-7774327)
chr4 (87-187)||(49044597-49044697)
chr4 (91-178)||(49041515-49041602)
chr4 (91-181)||(7800251-7800341)
chr4 (91-181)||(7813094-7813184)
chr4 (84-182)||(7907932-7908030)
chr4 (58-203)||(45366570-45366718)
chr4 (477-539)||(50669055-50669117)
chr4 (90-182)||(37827367-37827459)
chr4 (79-178)||(48170963-48171065)
chr4 (91-182)||(7786057-7786148)
chr4 (477-544)||(7877729-7877796)
chr4 (79-182)||(48870144-48870247)
chr4 (79-182)||(48885830-48885933)
chr4 (68-178)||(48156804-48156914)
chr4 (501-613)||(48852690-48852802)
chr4 (91-178)||(48891023-48891110)
chr4 (79-157)||(48735713-48735791)
chr4 (99-182)||(33134196-33134282)
chr4 (477-536)||(7908325-7908384)
chr4 (477-530)||(7773845-7773898)
chr4 (329-422)||(48870397-48870490)
chr4 (329-422)||(48875701-48875794)
chr4 (329-422)||(48886083-48886176)
chr4 (58-182)||(48898303-48898430)
chr4 (93-158)||(49048996-49049061)
chr4 (495-604)||(48891430-48891539)
chr4 (329-401)||(50250938-50251010)
chr4 (331-422)||(37827121-37827212)
chr4 (93-187)||(48148050-48148147)
chr4 (477-544)||(48170576-48170643)
chr4 (567-604)||(49044141-49044178)
chr4 (69-162)||(50668635-50668728)
[»] chr3 (4 HSPs)
chr3 (68-175)||(11006342-11006449)
chr3 (68-175)||(11024917-11025024)
chr3 (91-175)||(47452287-47452371)
chr3 (68-175)||(11015905-11016012)
[»] chr5 (4 HSPs)
chr5 (56-182)||(29695731-29695857)
chr5 (72-158)||(29712866-29712952)
chr5 (68-178)||(29687642-29687752)
chr5 (91-177)||(1812039-1812125)
[»] chr1 (5 HSPs)
chr1 (99-182)||(24309799-24309882)
chr1 (82-181)||(24322067-24322166)
chr1 (93-181)||(24340030-24340118)
chr1 (118-181)||(24366796-24366859)
chr1 (477-533)||(24310171-24310227)
[»] scaffold0508 (1 HSPs)
scaffold0508 (105-182)||(11890-11967)
[»] chr7 (1 HSPs)
chr7 (68-125)||(48883373-48883430)
[»] chr6 (1 HSPs)
chr6 (91-187)||(21015390-21015486)


Alignment Details
Target: chr8 (Bit Score: 568; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 11 - 651
Target Start/End: Original strand, 12194835 - 12195474
Alignment:
Q  11 cacagagaagaattacactcgcatggcgaagatgaaagagacgttatatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12194835 cacagagaagaattacactcgcatggcgaagatgaaagagacgttatatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtct 12194934  T
Q  111 cttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacatgttgatgtttccgcagcaaaaattgtgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12194935 cttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacatgttgatgtttccgcagcaaaaattgtgt 12195034  T
Q  211 ccatatcaagaactcgacctcttgctgaaattcgctttatagattttgaaacatccattatccatgattctgtttcactggaccatacttttctacttcc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  12195035 ccatatcaagaactcgacctcttgctgaaattcgctttatagattttgaaacatccattaaccatgattctgtttcgctggaccatagttttctacttcc 12195134  T
Q  311 aaatggttannnnnnnnatgaaattaaaggttcaagcagagggtttatattattgaactgtttgacaaacctctacgtatggaatccatcctctagattt 410  Q
    ||| |||||        ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12195135 aaaaggttattttttt-atgaaattaaaggttcgtgcagagggtttatattattgaattgtttgacaaacctctacgtatggaatccatcctctagattt 12195233  T
Q  411 cacaaagaaataaaactgtctccttttgcttgcaaatttcttgcatataatccacgtcatcttctaggttttggttatgaccgattaagagatgattact 510  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12195234 cacaaagaaataaaattgtctccttttgcttgcaaatttcttgcatataatccacgtcatcttctaggttttggttatgacggattaagagatgattact 12195333  T
Q  511 tggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtggaatgaaattgaaggtcc 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12195334 tggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtggaatgaaattgaaggtcc 12195433  T
Q  611 tcaaatcacttattttaatgccacggctaatcgcaaagcag 651  Q
    ||| ||||||||||| |||||||||||||||||||||||||    
T  12195434 tcacatcacttatttgaatgccacggctaatcgcaaagcag 12195474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 11 - 651
Target Start/End: Original strand, 12439263 - 12439902
Alignment:
Q  11 cacagagaagaattacactcgcatggcgaagatgaaagagacgttatatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12439263 cacagagaagaattacactcgcatggcgaagatgaaagagacgttatatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtct 12439362  T
Q  111 cttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacatgttgatgtttccgcagcaaaaattgtgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12439363 cttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacatgttgatgtttccgcagcaaaaattgtgt 12439462  T
Q  211 ccatatcaagaactcgacctcttgctgaaattcgctttatagattttgaaacatccattatccatgattctgtttcactggaccatacttttctacttcc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  12439463 ccatatcaagaactcgacctcttgctgaaattcgctttatagattttgaaacatccattaaccatgattctgtttcgctggaccatagttttctacttcc 12439562  T
Q  311 aaatggttannnnnnnnatgaaattaaaggttcaagcagagggtttatattattgaactgtttgacaaacctctacgtatggaatccatcctctagattt 410  Q
    ||| |||||        ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12439563 aaaaggttattttttt-atgaaattaaaggttcgtgcagagggtttatattattgaattgtttgacaaacctctacgtatggaatccatcctctagattt 12439661  T
Q  411 cacaaagaaataaaactgtctccttttgcttgcaaatttcttgcatataatccacgtcatcttctaggttttggttatgaccgattaagagatgattact 510  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12439662 cacaaagaaataaaattgtctccttttgcttgcaaatttcttgcatataatccacgtcatcttctaggttttggttatgacggattaagagatgattact 12439761  T
Q  511 tggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtggaatgaaattgaaggtcc 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12439762 tggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtggaatgaaattgaaggtcc 12439861  T
Q  611 tcaaatcacttattttaatgccacggctaatcgcaaagcag 651  Q
    ||| ||||||||||| |||||||||||||||||||||||||    
T  12439862 tcacatcacttatttgaatgccacggctaatcgcaaagcag 12439902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 629
Target Start/End: Original strand, 12199843 - 12200459
Alignment:
Q  13 cagagaagaattacactcgcatggcgaagatgaaagagacgttatatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctct 112  Q
    |||||||||| |||| |||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12199843 cagagaagaaatacaatcgcatggtgaagatgaaagagacgttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctct 12199942  T
Q  113 tttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacatgttgatgtttccgcagcaaaaattgtgtcc 212  Q
    |||||||||||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| | |||| ||||||||      
T  12199943 tttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcatgttgatgtttcctccgcaagaattgtgtta 12200042  T
Q  213 atatcaagaactcgacctcttgctgaaattcgctttatagattttgaaacatccattatccatgattctgtttcactggaccatacttttctacttccaa 312  Q
    || |||||||||| ||||  || ||  ||||| | ||||||||||||||||||||||| |||||||||  ||||||||||||||| |||||| ||||  |    
T  12200043 atttcaagaactccacctactgttgggattcgttctatagattttgaaacatccattaaccatgattccttttcactggaccataattttctgcttcaca 12200142  T
Q  313 atggttannnnnnnnatgaaattaaaggttcaagcagagggtttatattattgaactgtttgacaaacctctacgtatggaatccatcctctagatttca 412  Q
      |||||        ||||||||||||||||| |||||||||||||||| ||| |||||| ||||||  ||||||||||||||||||||||||| |||||    
T  12200143 gaggttactatttccatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcctctaggtttca 12200242  T
Q  413 caaagaaataaaactgtctccttttgcttgcaaatttcttgcatataatccacgtcatcttctaggttttggttatgaccgattaagagatgattacttg 512  Q
    |||| |||||    |||||||||||| ||  || || | ||||||  ||| || ||||||    ||||||||||||||||| | ||||||||||||||||    
T  12200243 caaaaaaatacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctatatggttttggttatgaccggtcaagagatgattacttg 12200342  T
Q  513 gtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtggaatgaaattgaaggtcctc 612  Q
    || ||||||||||||  |  |||| |||| ||||||||||||||  | || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12200343 gtggttttattgtccctttgtccagccttggtgaaaacttcatcaaagttggaatttttctcattgagagataacaagtggaatgaaattgaaggtcctc 12200442  T
Q  613 aaatcacttattttaat 629  Q
    | ||||||| |||||||    
T  12200443 acatcacttcttttaat 12200459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 629
Target Start/End: Original strand, 12444271 - 12444887
Alignment:
Q  13 cagagaagaattacactcgcatggcgaagatgaaagagacgttatatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctct 112  Q
    |||||||||| |||| |||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12444271 cagagaagaaatacaatcgcatggtgaagatgaaagagacgttgtatattccttatgaattaatcattcaaatcctgctgaggttgccggtgaagtctct 12444370  T
Q  113 tttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacatgttgatgtttccgcagcaaaaattgtgtcc 212  Q
    |||||||||||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| | |||| ||||||||      
T  12444371 tttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcatgttgatgtttcctccgcaagaattgtgtta 12444470  T
Q  213 atatcaagaactcgacctcttgctgaaattcgctttatagattttgaaacatccattatccatgattctgtttcactggaccatacttttctacttccaa 312  Q
    || |||||||||| ||||  || ||  ||||| | ||||||||||||||||||||||| |||||||||  ||||||||||||||| |||||| ||||  |    
T  12444471 atttcaagaactccacctactgttgggattcgttctatagattttgaaacatccattaaccatgattccttttcactggaccataattttctgcttcaca 12444570  T
Q  313 atggttannnnnnnnatgaaattaaaggttcaagcagagggtttatattattgaactgtttgacaaacctctacgtatggaatccatcctctagatttca 412  Q
      |||||        ||||||||||||||||| |||||||||||||||| ||| |||||| ||||||  ||||||||||||||||||||||||| |||||    
T  12444571 gaggttactatttccatgaaattaaaggttcatgcagagggtttatattcttgcactgttggacaaatatctacgtatggaatccatcctctaggtttca 12444670  T
Q  413 caaagaaataaaactgtctccttttgcttgcaaatttcttgcatataatccacgtcatcttctaggttttggttatgaccgattaagagatgattacttg 512  Q
    |||| |||||    |||||||||||| ||  || || | ||||||  ||| || ||||||    ||||||||||||||||| | ||||||||||||||||    
T  12444671 caaaaaaatacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctatatggttttggttatgaccggtcaagagatgattacttg 12444770  T
Q  513 gtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtggaatgaaattgaaggtcctc 612  Q
    || ||||||||||||  |  |||| |||| ||||||||||||||  | || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12444771 gtggttttattgtccctttgtccagccttggtgaaaacttcatcaaagttggaatttttctcattgagagataacaagtggaatgaaattgaaggtcctc 12444870  T
Q  613 aaatcacttattttaat 629  Q
    | ||||||| |||||||    
T  12444871 acatcacttcttttaat 12444887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 15348477 - 15348567
Alignment:
Q  92 gaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacat 182  Q
    |||||| ||||||||||||||| || ||||||||||| |||||||||| ||||| |||||||||||||||||  |||| ||||||||||||    
T  15348477 gaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacat 15348567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 601
Target Start/End: Original strand, 15348865 - 15348980
Alignment:
Q  486 tatgaccgattaagagatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagata 585  Q
    ||||||| ||||| ||||||||||||||| |||||| |||||||||||||  ||||||  || | ||  |||| ||| || |||||||| ||||||||||    
T  15348865 tatgaccaattaaaagatgattacttggtggttttaatgtcctatgatcccgccttagataatatttattcgtgtttggagtttttctcgttgagagata 15348964  T
Q  586 ataagtggaatgaaat 601  Q
    ||  |||||| |||||    
T  15348965 atgtgtggaaggaaat 15348980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 4032368 - 4032293
Alignment:
Q  103 tgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattc 178  Q
    ||||||||||| || ||||||| ||  ||||||| || |||||| ||||||| |||||||| ||||||||||||||    
T  4032368 tgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaactcttatatctgatcctcactttgcaaattc 4032293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 41311594 - 41311566
Alignment:
Q  82 aaatcctgctgaggttgccggtgaagtct 110  Q
    |||||||||||||||||||||||||||||    
T  41311594 aaatcctgctgaggttgccggtgaagtct 41311566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 7770995 - 7771109
Alignment:
Q  68 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 167  Q
    |||| |||| || ||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||| |||    
T  7770995 tgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcctcac 7771094  T
Q  168 tttgcaaattcacat 182  Q
    |||| ||||||||||    
T  7771095 tttgaaaattcacat 7771109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 7904604 - 7904737
Alignment:
Q  49 agacgttatatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatc 148  Q
    ||||||| |||||||||  |||||| || ||||||||| || || ||||||| |||||||||||| || ||||||||||  ||||||||| |||||| ||    
T  7904604 agacgttgtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttc 7904703  T
Q  149 tcttatctctgatccacactttgcaaattcacat 182  Q
    ||||||||||||||| ||||||||||||||||||    
T  7904704 tcttatctctgatcctcactttgcaaattcacat 7904737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 7238207 - 7238093
Alignment:
Q  68 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 167  Q
    |||| ||||||| ||||| ||| |||||||||| |||||||||||| | |||||||||||  |||||||||| ||||| |||||||||||||| || |||    
T  7238207 tgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctgaccctcac 7238108  T
Q  168 tttgcaaattcacat 182  Q
    |||||||||||||||    
T  7238107 tttgcaaattcacat 7238093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 7789693 - 7789794
Alignment:
Q  81 caaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcac 180  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| ||| ||||||| ||||| ||||||| ||||||||    
T  7789693 caaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctccgatcctcactttgaaaattcac 7789792  T
Q  181 at 182  Q
    ||    
T  7789793 at 7789794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 7765219 - 7765326
Alignment:
Q  75 atcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaa 174  Q
    ||||||||| | ||| ||||||| |||||||||||||| |||  |||||| ||||||||||||| |||||| ||| ||||||||||||| ||||||||||    
T  7765219 atcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcactttgcaa 7765318  T
Q  175 attcacat 182  Q
    ||||||||    
T  7765319 attcacat 7765326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 45372544 - 45372430
Alignment:
Q  68 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 167  Q
    |||||| || |||||||| || || ||||||||||||||||||||| || ||||||||||  |||||||||| ||||| ||| ||||||||||||| ||     
T  45372544 tgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcctcat 45372445  T
Q  168 tttgcaaattcacat 182  Q
    |||||||||||||||    
T  45372444 tttgcaaattcacat 45372430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 7877300 - 7877425
Alignment:
Q  57 tatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatct 156  Q
    |||||||||  |||||| || || ||||||||| |  |||||| ||||||||||||| || ||||||||||||||||||||  |||||| ||||||||||    
T  7877300 tatcttcctcatgaattgattatccaaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatct 7877399  T
Q  157 ctgatccacactttgcaaattcacat 182  Q
    |||||||  | |||||||||||||||    
T  7877400 ctgatcccaattttgcaaattcacat 7877425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 7822583 - 7822673
Alignment:
Q  91 tgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcaca 181  Q
    |||||||||||||||||| |||| || ||||||| ||  ||||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  7822583 tgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgatccccactttgcaaattcaca 7822673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 48862832 - 48862949
Alignment:
Q  68 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctc---tgatcca 164  Q
    |||||| ||||| | ||||||||| ||||| ||||||||||||||| |  ||||||||||| |||| ||||| ||||| |||||||||||   ||||||     
T  48862832 tgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatgatcct 48862931  T
Q  165 cactttgcaaattcacat 182  Q
    ||||||||||||||||||    
T  48862932 cactttgcaaattcacat 48862949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 7774327 - 7774202
Alignment:
Q  57 tatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatct 156  Q
    |||||||||  |||||| || ||||||||| || || || ||||||||||||||||| |   |||||||||  ||||||||  |||||| ||||||||||    
T  7774327 tatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatct 7774228  T
Q  157 ctgatccacactttgcaaattcacat 182  Q
    ||||||| || |||||||||||||||    
T  7774227 ctgatccccattttgcaaattcacat 7774202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 49044697 - 49044597
Alignment:
Q  87 ctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacatgttg 186  Q
    |||||||||||||| |||| |||||||||| ||||||| ||  ||||||||| |||||| |||||||||||| |  | |||||||||||||||||| |||    
T  49044697 ctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacattttg 49044598  T
Q  187 a 187  Q
    |    
T  49044597 a 49044597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 49041602 - 49041515
Alignment:
Q  91 tgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattc 178  Q
    |||| ||||| |||||||||||| | |||||||||||| |||| ||||| ||||| ||||||||||||||||| || |||||||||||    
T  49041602 tgagattgccagtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattc 49041515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 7800251 - 7800341
Alignment:
Q  91 tgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcaca 181  Q
    |||||||||||||||||| |||| || ||||||| ||  ||||||| |||||||| |||||| |||||||||| | |||||||||||||||    
T  7800251 tgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctgatccccgctttgcaaattcaca 7800341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 7813094 - 7813184
Alignment:
Q  91 tgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcaca 181  Q
    |||||||||||||||||| |||| || ||||||| ||  ||||||| |||||||| |||||||||||||| || ||||||||||| |||||    
T  7813094 tgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgaaccccactttgcaaagtcaca 7813184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 7907932 - 7908030
Alignment:
Q  84 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacat 182  Q
    ||||| ||||||||||||||||||||||||  | ||||||| |   || ||||||||||||| ||||||||||||| ||| || |||||||||||||||    
T  7907932 atcctactgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacat 7908030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 58 - 203
Target Start/End: Complemental strand, 45366718 - 45366570
Alignment:
Q  58 atcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctc 157  Q
    ||||||||  |||||| || || |||||||| || ||||| || |||||||||||| || ||||||| ||| |||||||||  ||||| |||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc 45366619  T
Q  158 ---tgatccacactttgcaaattcacatgttgatgtttccgcagcaaaa 203  Q
       |||| |||||||||||||||||||| || |  ||||||| ||||||    
T  45366618 tcgtgattcacactttgcaaattcacattttcaactttccgccgcaaaa 45366570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 477 - 539
Target Start/End: Original strand, 50669055 - 50669117
Alignment:
Q  477 ggttttggttatgaccgattaagagatgattacttggtcgttttattgtcctatgatccaacc 539  Q
    ||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||    
T  50669055 ggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatccaacc 50669117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 37827459 - 37827367
Alignment:
Q  90 ctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacat 182  Q
    ||||||||| | |||||||||||| || |||| | |||| ||||||||||||||||| ||||||| ||| ||||  |||||||||||||||||    
T  37827459 ctgaggttgtcagtgaagtctcttataagttttacatgcgtttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacat 37827367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 48171065 - 48170963
Alignment:
Q  79 ttcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctc---tgatccacactttgcaaa 175  Q
    ||||||| |||||||||||  |||||||||||||| || ||||||||||  |||||||||| |||||  ||||||||||   |||||| |||||||||||    
T  48171065 ttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaa 48170966  T
Q  176 ttc 178  Q
    |||    
T  48170965 ttc 48170963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 7786057 - 7786148
Alignment:
Q  91 tgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacat 182  Q
    |||||||||||||||| |||||| |||  ||||||||| ||||||||  |||| | ||| ||||||||||||| || |||||||||||||||    
T  7786057 tgaggttgccggtgaaatctcttatattgttcaaatgcgtttgtaagctatggatttctattatctctgatcctcaatttgcaaattcacat 7786148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 477 - 544
Target Start/End: Original strand, 7877729 - 7877796
Alignment:
Q  477 ggttttggttatgaccgattaagagatgattacttggtcgttttattgtcctatgatccaaccttagt 544  Q
    |||||||||||||||| || |||||||||||||||||| |||| |||||||||| |||||||| ||||    
T  7877729 ggttttggttatgaccaatcaagagatgattacttggtggtttcattgtcctataatccaaccatagt 7877796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 48870144 - 48870247
Alignment:
Q  79 ttcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattc 178  Q
    ||||||| ||||||||| | |||||||| |||||| |  ||||||||||| |||||||||| ||||| | ||||||||| ||||| |  |||||||||||    
T  48870144 ttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctccgatcccctttttgcaaattc 48870243  T
Q  179 acat 182  Q
    ||||    
T  48870244 acat 48870247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 48885830 - 48885933
Alignment:
Q  79 ttcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattc 178  Q
    ||||||| ||||||||| | |||||||| |||||| |  ||||||||||| |||||||||| ||||| | ||||||||| ||||| |  |||||||||||    
T  48885830 ttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctccgatcccctttttgcaaattc 48885929  T
Q  179 acat 182  Q
    ||||    
T  48885930 acat 48885933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 48156914 - 48156804
Alignment:
Q  68 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 167  Q
    |||||| || |||||||||||  |  |||| ||||||||||||||| || ||||||| ||| |||||||||| ||||| ||||||||||| ||| | ||     
T  48156914 tgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctccgatactcat 48156815  T
Q  168 tttgcaaattc 178  Q
    |||||||||||    
T  48156814 tttgcaaattc 48156804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 501 - 613
Target Start/End: Original strand, 48852690 - 48852802
Alignment:
Q  501 gatgattacttggtcgttttattgtcctatgatccaaccttagtgaaaacttcatcgtatttagaatttttctcattgagagataataagtggaatgaaa 600  Q
    |||||||||||||| |||||| ||||||||||| |||||||||  ||   ||||||  ||||||| |||||||||||||||| ||||   ||||| ||||    
T  48852690 gatgattacttggtagttttaatgtcctatgatacaaccttagctaatgtttcatcacatttagagtttttctcattgagagctaatgcatggaaagaaa 48852789  T
Q  601 ttgaaggtcctca 613  Q
    |||| ||| ||||    
T  48852790 ttgagggtactca 48852802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 48891023 - 48891110
Alignment:
Q  91 tgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattc 178  Q
    |||||||  |||| ||||||||| || ||||||||||| |||||||||| ||||| |||||| |||| ||||| || |||||||||||    
T  48891023 tgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattc 48891110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 48735791 - 48735713
Alignment:
Q  79 ttcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctc 157  Q
    ||||||| || |||||||| ||||||||||||||| |  ||||||||||  |||||||||| ||||| |||||||||||    
T  48735791 ttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctc 48735713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 33134282 - 33134196
Alignment:
Q  99 ccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctc---tgatccacactttgcaaattcacat 182  Q
    ||||||||||||||| |  ||||||||||| |||||||| | || || |||||||||||   |||||| ||||||||||||||||||    
T  33134282 ccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctctaatgatcctcactttgcaaattcacat 33134196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 536
Target Start/End: Original strand, 7908325 - 7908384
Alignment:
Q  477 ggttttggttatgaccgattaagagatgattacttggtcgttttattgtcctatgatcca 536  Q
    ||||||||||||||||  | |||||||||||||||||| |||| |||||||||| |||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcctataatcca 7908384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 530
Target Start/End: Complemental strand, 7773898 - 7773845
Alignment:
Q  477 ggttttggttatgaccgattaagagatgattacttggtcgttttattgtcctat 530  Q
    ||||||||||||||||   ||||||||||||||||||| ||| |||||||||||    
T  7773898 ggttttggttatgaccaggtaagagatgattacttggtggttgtattgtcctat 7773845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 329 - 422
Target Start/End: Original strand, 48870397 - 48870490
Alignment:
Q  329 tgaaattaaaggttcaagcagagggtttatattattgaactgtttgacaaacctctacgtatggaatccatcctctagatttcacaaagaaata 422  Q
    |||||||||||||||| | ||||| |||||||||||| | |||    ||| ||||||| |||||||||||||| |  ||||||||||| |||||    
T  48870397 tgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaata 48870490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 329 - 422
Target Start/End: Original strand, 48875701 - 48875794
Alignment:
Q  329 tgaaattaaaggttcaagcagagggtttatattattgaactgtttgacaaacctctacgtatggaatccatcctctagatttcacaaagaaata 422  Q
    |||||||||||||||  ||||||| |||||| | ||| | |||||  ||| ||||||| |||||||||||||| |  ||||||||||| |||||    
T  48875701 tgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaacaaata 48875794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 329 - 422
Target Start/End: Original strand, 48886083 - 48886176
Alignment:
Q  329 tgaaattaaaggttcaagcagagggtttatattattgaactgtttgacaaacctctacgtatggaatccatcctctagatttcacaaagaaata 422  Q
    |||||||||||||||| | ||||| |||||||||||| | |||    ||| ||||||| |||||||||||||| |  ||||||||||| |||||    
T  48886083 tgaaattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaata 48886176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 48898303 - 48898430
Alignment:
Q  58 atcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctc 157  Q
    ||||||||  ||||||  |||||||||| ||||||||  | || ||||||||||||  | ||||||| ||  |||||||||| ||||| || ||||||||    
T  48898303 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 48898402  T
Q  158 ---tgatccacactttgcaaattcacat 182  Q
       |||| | ||||||||||||||||||    
T  48898403 tcatgatgcccactttgcaaattcacat 48898430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 49049061 - 49048996
Alignment:
Q  93 aggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctct 158  Q
    ||||||| ||||| |||||||||| ||||||| ||  ||||||||| |||||| ||||||||||||    
T  49049061 aggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 604
Target Start/End: Original strand, 48891430 - 48891539
Alignment:
Q  495 ttaagagatgattacttggtcgttttattgtcctatgatccaaccttag-tgaaaacttcatc-gtatttagaatttttctcattgagagataataagtg 592  Q
    |||||||||||||| ||||| |||| | ||||||||||| ||||||||| ||  ||  ||||| |  ||| || |||||||||||||||||||||| |||    
T  48891430 ttaagagatgattagttggtggtttcagtgtcctatgatacaaccttagatggtaa--tcatccgcgtttggagtttttctcattgagagataatatgtg 48891527  T
Q  593 gaatgaaattga 604  Q
    ||| ||||||||    
T  48891528 gaaagaaattga 48891539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 401
Target Start/End: Complemental strand, 50251010 - 50250938
Alignment:
Q  329 tgaaattaaaggttcaagcagagggtttatattattgaactgtttgacaaacctctacgtatggaatccatcc 401  Q
    |||||||||||||||| | ||||| |||||||| ||  |||||||  ||| ||||||| ||||||||||||||    
T  50251010 tgaaattaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatcc 50250938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 422
Target Start/End: Complemental strand, 37827212 - 37827121
Alignment:
Q  331 aaattaaaggttcaagcagagggtttatattattgaactgtttgacaaacctctacgtatggaatccatcctctagatttcacaaagaaata 422  Q
    |||||||||||||| | ||||||||| |||| ||| || |||    |||| ||||| |||||||||||||| || ||||||||||| |||||    
T  37827212 aaattaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcacaaacaaata 37827121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 48148147 - 48148050
Alignment:
Q  93 aggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctc---tgatccacactttgcaaattcacatgttga 187  Q
    ||||| || |||||||||||| |  ||||||||||  | |||||||| ||||| |||||||||||   |||||| ||||| |||||||||||| ||||    
T  48148147 aggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctctcatgatcctcacttcgcaaattcacattttga 48148050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 544
Target Start/End: Complemental strand, 48170643 - 48170576
Alignment:
Q  477 ggttttggttatgaccgattaagagatgattacttggtcgttttattgtcctatgatccaaccttagt 544  Q
    |||||||| ||||| |  ||||||||||||||||| || |||| | |||||| |||||||||||||||    
T  48170643 ggttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcctgtgatccaaccttagt 48170576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 604
Target Start/End: Complemental strand, 49044178 - 49044141
Alignment:
Q  567 tttttctcattgagagataataagtggaatgaaattga 604  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  49044178 tttttctcattgagagataatagatggaatgaaattga 49044141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 50668635 - 50668728
Alignment:
Q  69 gaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatc 162  Q
    ||||| |||||||||||  || |||||||||| ||||| | |||| || ||||||| ||| ||||||| || ||||| ||||| ||||| ||||    
T  50668635 gaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatc 50668728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 11006449 - 11006342
Alignment:
Q  68 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 167  Q
    |||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||  ||||||||||||||||| |||||||||||||||| |||    
T  11006449 tgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcac 11006350  T
Q  168 tttgcaaa 175  Q
    ||||||||    
T  11006349 tttgcaaa 11006342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 11025024 - 11024917
Alignment:
Q  68 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 167  Q
    |||||| ||||| |||||| || ||||||| ||||||||||||||  || ||||||||||| ||||||||||||||||| |||||||||||||||   ||    
T  11025024 tgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctgatcataac 11024925  T
Q  168 tttgcaaa 175  Q
    ||||||||    
T  11024924 tttgcaaa 11024917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 47452371 - 47452287
Alignment:
Q  91 tgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaa 175  Q
    ||||||||||||||||||||||| || | ||||| ||||||| |||||||||||| ||||||||||||||||| | |||||||||    
T  47452371 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctctttgcaaa 47452287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 11016012 - 11015905
Alignment:
Q  68 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 167  Q
    |||||| || || |||||| || ||||||| ||||||||||||||  || ||||||||||| |||||||||||| |||| |||||||||||||||   ||    
T  11016012 tgaattgataatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatctctgatcataac 11015913  T
Q  168 tttgcaaa 175  Q
    ||||||||    
T  11015912 tttgcaaa 11015905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 29695731 - 29695857
Alignment:
Q  56 atatcttccttctgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatc 155  Q
    ||||||||||| ||| |||||||||||||||||  | ||||| || || ||||||||| |  ||||||||||| ||||||||| |||||||||||||||     
T  29695731 atatcttccttttgagttaatcattcaaatcctattaaggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggttatctcttata 29695830  T
Q  156 tctgatccacactttgcaaattcacat 182  Q
    ||| | || ||||||||||||||||||    
T  29695831 tctcaacctcactttgcaaattcacat 29695857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 29712952 - 29712866
Alignment:
Q  72 ttaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctct 158  Q
    |||||||||||||||||  | | ||| ||||||||||||||| |  ||||||| ||| ||||||||| |||||| ||||||||||||    
T  29712952 ttaatcattcaaatccttttaatgttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 29687642 - 29687752
Alignment:
Q  68 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 167  Q
    |||||| |||||||||||||| || | ||| || |||||||||||| || | ||||| ||  |||||||||| ||||| ||||| || ||| | || |||    
T  29687642 tgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcac 29687741  T
Q  168 tttgcaaattc 178  Q
    |||||||||||    
T  29687742 tttgcaaattc 29687752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 1812039 - 1812125
Alignment:
Q  91 tgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaatt 177  Q
    ||||||| || ||||||| |||  || ||| ||||||  ||||||||| |||||| |||||||||||  |||| |||||||||||||    
T  1812039 tgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctcaaatccccactttgcaaatt 1812125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 24309799 - 24309882
Alignment:
Q  99 ccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacat 182  Q
    ||||| ||||||||| |  ||||||||| | ||||||||| |||||| ||||||||||||||| | ||||||||||||||||||    
T  24309799 ccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctgattctcactttgcaaattcacat 24309882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 24322067 - 24322166
Alignment:
Q  82 aaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcaca 181  Q
    ||||||| || ||||||| ||||||||||||| |  ||||||||||| |||||||||| ||||| |||||||||||  |||| |  ||||||||||||||    
T  24322067 aaatccttctaaggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctcaaatcctcgttttgcaaattcaca 24322166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 24340030 - 24340118
Alignment:
Q  93 aggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcaca 181  Q
    ||||| ||||| ||||||||| |  |||||||||   |||||||||||||||| || ||||||||||||   |||||||||||||||||    
T  24340030 aggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctgataatcactttgcaaattcaca 24340118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 24366796 - 24366859
Alignment:
Q  118 gtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcaca 181  Q
    ||||||||||  |||| ||||||||||| |||||||||||  ||||  ||||||||||||||||    
T  24366796 gtttcaaatgtgtttgcaagtcatggttttctcttatctcaaatccttactttgcaaattcaca 24366859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 533
Target Start/End: Original strand, 24310171 - 24310227
Alignment:
Q  477 ggttttggttatgaccgattaagagatgattacttggtcgttttattgtcctatgat 533  Q
    |||||||||||||||   | |||||||||||||||||| |||||| | |||||||||    
T  24310171 ggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatgat 24310227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 11890 - 11967
Alignment:
Q  105 aagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacat 182  Q
    ||||||||| |  ||||||||| | |||||||||||||||| |||||||||||||||   ||||||||||||||||||    
T  11890 aagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacat 11967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 48883373 - 48883430
Alignment:
Q  68 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaa 125  Q
    ||||||||||||||||||  || ||||||| |  ||||||||||||||| ||||||||    
T  48883373 tgaattaatcattcaaattttggtgaggttacatgtgaagtctcttttacgtttcaaa 48883430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 21015390 - 21015486
Alignment:
Q  91 tgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacatgttga 187  Q
    ||||||| ||||| | ||||||| || ||||||| ||  ||||||||| || ||| |||||||||||| |  | |||||||||| ||||||| ||||    
T  21015390 tgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctctcaaacccactttgcaatttcacattttga 21015486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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