View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5549_high_6 (Length: 415)
Name: NF5549_high_6
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5549_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 12851839 - 12851451
Alignment:
| Q |
20 |
tatccaacattcaatgggttactttttcccatgttaccggtactagtccaaccaagacacattccaaacacccaaccttaggcgtgagtggtgtgtgttg |
119 |
Q |
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| T |
12851839 |
tatccaacattcaatgggttactctttcccatgttaccggaactagtccaaccaagacacattccaaacacccaaccttaggcgtgagtggtgtgtgttg |
12851740 |
T |
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| Q |
120 |
aaggtctcatatttaatgagataaaacattaaattatgtttctaagtgatctataatcattttcttacaagttccctttttaggggttgagttaggctca |
219 |
Q |
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| T |
12851739 |
aaggtctcgtattcaatgagataaaacattaaattatgtttctaagtgatctataatcatttccttacaagttccctttttaggggttgagttaggctca |
12851640 |
T |
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| Q |
220 |
aaactcatggtttcaaacttcgactgcatcgcgttatgcaaccgcaatattttggctacgacaatttctacaaccccgtcaagccacaattagggtgtga |
319 |
Q |
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| T |
12851639 |
aaactcatggtttcaaacttcgactgcatcgcgttatgcaaccgcaatattatggctacgacaatttctacaaccccatcaagccacaattagggtgtga |
12851540 |
T |
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| Q |
320 |
ttgtaaatcacattttaacgcgacaacaaccgtaacatagagaattgaagttttatctttcaaatgcttaatgaaataacttgtctgtg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||| |
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| T |
12851539 |
ttgtaaatcacattttaacgcgacaacaaccgtaacatagagaattgaagttttttctttcaaatgcttaaagaaatcacttgcctgtg |
12851451 |
T |
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