View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5549_high_7 (Length: 377)

Name: NF5549_high_7
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5549_high_7
NF5549_high_7
[»] chr3 (5 HSPs)
chr3 (1-365)||(42616115-42616485)
chr3 (293-365)||(13240673-13240745)
chr3 (149-215)||(186409-186475)
chr3 (116-215)||(37613672-37613771)
chr3 (1-80)||(186603-186686)
[»] chr7 (5 HSPs)
chr7 (293-365)||(6949833-6949905)
chr7 (293-365)||(12334830-12334902)
chr7 (293-365)||(12339016-12339088)
chr7 (111-215)||(27838196-27838300)
chr7 (33-80)||(27838387-27838434)
[»] chr5 (4 HSPs)
chr5 (293-365)||(39505982-39506054)
chr5 (1-76)||(29251760-29251834)
chr5 (111-215)||(22604892-22604996)
chr5 (111-215)||(36368391-36368495)
[»] chr4 (5 HSPs)
chr4 (293-365)||(18188184-18188256)
chr4 (111-215)||(33488637-33488741)
chr4 (111-215)||(43016848-43016952)
chr4 (117-215)||(16893584-16893682)
chr4 (1-76)||(16893776-16893855)
[»] chr8 (3 HSPs)
chr8 (1-82)||(27631275-27631355)
chr8 (155-224)||(27630827-27630896)
chr8 (111-185)||(11694820-11694894)
[»] chr1 (5 HSPs)
chr1 (293-358)||(33711690-33711755)
chr1 (111-215)||(20765337-20765441)
chr1 (111-215)||(26431389-26431493)
chr1 (139-215)||(3931998-3932074)
chr1 (1-80)||(20765530-20765613)
[»] chr2 (2 HSPs)
chr2 (111-215)||(7362483-7362587)
chr2 (1-83)||(7362677-7362763)
[»] chr6 (2 HSPs)
chr6 (112-215)||(11266262-11266365)
chr6 (1-83)||(11266455-11266541)
[»] scaffold1829 (1 HSPs)
scaffold1829 (293-359)||(490-556)
[»] scaffold0002 (1 HSPs)
scaffold0002 (293-351)||(252516-252574)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 42616115 - 42616485
Alignment:
Q  1 aagttaatattatcagtcctatgcaaccaagtataagagtttaacttttcttattaattggtgaccatattcaaccaattttaannnnnnnnn--gaaag 98  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||    
T  42616115 aagttaatattatcggtcctatgcaaccaagtataagagtttaacttttcttattaattggtgaccatattcaaccaattttaatttatttttttgaaag 42616214  T
Q  99 aggcagacatagaaatgttgttcaac----atacataattaatctctttaccatattagattttagaaacaaccattattttttagttagagatcttgac 194  Q
    ||||| ||||||||||||||||||||    ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42616215 aggcaaacatagaaatgttgttcaacttacatacataattaatttctttatcatattagattttagaaacagccattattttttagttagagatcttgac 42616314  T
Q  195 tgacatctcagaacctaattacacatgcaactttcctgtatcctattcttagagctcccctttgtgctgattataggctttttctttgccctttaggaga 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||| | |||    
T  42616315 tgacatctcagaacctaattacacatgcaactttcctgtatcctatccttagagctcccctttgcgttgattataggccttttctttgccctttggaaga 42616414  T
Q  295 agaggatcgtttaaccgtagcaagagcacgaaaaattgaacatttcttatcccaaccttttttcgcagcag 365  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  42616415 agatgatcgtttaaccgtagcaagagcacaaaaaattgaacatttcttatcccaaccttttttcgaagcag 42616485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 365
Target Start/End: Original strand, 13240673 - 13240745
Alignment:
Q  293 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacatttcttatcccaaccttttttcgcagcag 365  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  13240673 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacgtttcttatcccaaccttttttcgtagcag 13240745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 186475 - 186409
Alignment:
Q  149 attagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaacctaatta 215  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||    
T  186475 attagattttggaaacaaccattattttctagttagagatcctgactaacatctcagaatctaatta 186409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 37613672 - 37613771
Alignment:
Q  116 ttgttcaacatacataattaatctctttaccatattagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaacctaatta 215  Q
    ||||||||| ||||||  | || |||||| || |||||||||| ||||||||||||||||| |||||||||||  ||||| |||||| |||| |||||||    
T  37613672 ttgttcaacttacatacatgatttctttatcagattagattttggaaacaaccattattttctagttagagattctgactaacatctgagaatctaatta 37613771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 186686 - 186603
Alignment:
Q  1 aagttaatattatcagtcctatgcaaccaagtataa----gagtttaacttttcttattaattggtgaccatattcaaccaatt 80  Q
    ||||||||||| || ||||||||||||||| |||||    |||||||||  ||||| || ||||||||| ||||||||||||||    
T  186686 aagttaatattttccgtcctatgcaaccaattataaataagagtttaaccgttcttgttcattggtgactatattcaaccaatt 186603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 365
Target Start/End: Original strand, 6949833 - 6949905
Alignment:
Q  293 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacatttcttatcccaaccttttttcgcagcag 365  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  6949833 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacgtttcttatcccaaccttttttcgtagcag 6949905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 12334902 - 12334830
Alignment:
Q  293 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacatttcttatcccaaccttttttcgcagcag 365  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  12334902 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacgtttcttatcccaaccttttttcgtagcag 12334830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 12339088 - 12339016
Alignment:
Q  293 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacatttcttatcccaaccttttttcgcagcag 365  Q
    ||||||||||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  12339088 gaagaggatcgtttaaccagagcaagagcacgaaaaatggaacgtttcttatcccaaccttttttcgtagcag 12339016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 27838300 - 27838196
Alignment:
Q  111 aaatgttgttcaacatacataattaatctctttaccatattagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaacct 210  Q
    |||||||||||||| ||||||  | || |||||| || |||||||||| ||||||||| ||||||| |||||||||||| ||||| ||||||||||| ||    
T  27838300 aaatgttgttcaacttacatacatgatttctttatcagattagattttggaaacaaccgttattttctagttagagatcctgactaacatctcagaatct 27838201  T
Q  211 aatta 215  Q
    |||||    
T  27838200 aatta 27838196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 27838434 - 27838387
Alignment:
Q  33 ataagagtttaacttttcttattaattggtgaccatattcaaccaatt 80  Q
    |||||||||||||| ||||| || ||||||||| ||||||||||||||    
T  27838434 ataagagtttaactgttcttgttcattggtgactatattcaaccaatt 27838387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 365
Target Start/End: Original strand, 39505982 - 39506054
Alignment:
Q  293 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacatttcttatcccaaccttttttcgcagcag 365  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  39505982 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacgtttcttatcccaaccttttttcgtagcag 39506054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29251760 - 29251834
Alignment:
Q  1 aagttaatattatcagtcctatgcaaccaagtataagagtttaacttttcttattaattggtgaccatattcaacc 76  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| ||||||||||||||||    
T  29251760 aagttaatattatcagtcctatgcaacaaattataagagtttaacttttcttgttaatt-gtgaccatattcaacc 29251834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 22604892 - 22604996
Alignment:
Q  111 aaatgttgttcaacatacataattaatctctttaccatattagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaacct 210  Q
    |||||||||||||| ||||||  | || |||||| || |||||||||| ||||||||| ||||||| |||||||||||| ||||| |||||||| || ||    
T  22604892 aaatgttgttcaacttacatacatgatttctttatcagattagattttggaaacaaccgttattttctagttagagatcctgactaacatctcaaaatct 22604991  T
Q  211 aatta 215  Q
    |||||    
T  22604992 aatta 22604996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 36368391 - 36368495
Alignment:
Q  111 aaatgttgttcaacatacataattaatctctttaccatattagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaacct 210  Q
    |||| ||||||||| ||||||  | || |||||| || |||||||||| ||||||||||||||||| |||||||||||  ||||| |||||| |||| ||    
T  36368391 aaatattgttcaacttacatacatgatttctttatcagattagattttggaaacaaccattattttctagttagagattctgactaacatctgagaatct 36368490  T
Q  211 aatta 215  Q
    |||||    
T  36368491 aatta 36368495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 18188256 - 18188184
Alignment:
Q  293 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacatttcttatcccaaccttttttcgcagcag 365  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  18188256 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacgtttcttatcccaaccttttttcgtagcag 18188184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 33488637 - 33488741
Alignment:
Q  111 aaatgttgttcaacatacataattaatctctttaccatattagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaacct 210  Q
    |||||||||||||| ||||||  | || |||||| || |||||||||| ||||||||| ||||||| |||||||||||| ||||| ||||||||||| ||    
T  33488637 aaatgttgttcaacttacatacatgatttctttatcagattagattttggaaacaaccgttattttctagttagagatcctgactaacatctcagaatct 33488736  T
Q  211 aatta 215  Q
    |||||    
T  33488737 aatta 33488741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 43016848 - 43016952
Alignment:
Q  111 aaatgttgttcaacatacataattaatctctttaccatattagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaacct 210  Q
    |||||||||||||| ||||||  | || |||||| || |||||||||| ||||||||| ||||||| |||||||||||| ||||| ||||||||||| ||    
T  43016848 aaatgttgttcaacttacatacatgatttctttatcagattagattttggaaacaaccgttattttctagttagagatcctgactaacatctcagaatct 43016947  T
Q  211 aatta 215  Q
    |||||    
T  43016948 aatta 43016952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 16893682 - 16893584
Alignment:
Q  117 tgttcaacatacataattaatctctttaccatattagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaacctaatta 215  Q
    |||||||| ||||||  | || |||||| || |||||||||| ||||||||||||||||| |||||||||||| | ||| ||||||||||| |||||||    
T  16893682 tgttcaacttacatacatgatttctttatcagattagattttggaaacaaccattattttctagttagagatcctaactaacatctcagaatctaatta 16893584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 16893855 - 16893776
Alignment:
Q  1 aagttaatattatcagtcctatgcaaccaagt----ataagagtttaacttttcttattaattggtgaccatattcaacc 76  Q
    |||||||||||||| ||||||||||||||| |    ||||||||||||   ||||| || ||||||||| ||||||||||    
T  16893855 aagttaatattatccgtcctatgcaaccaattataaataagagtttaatcgttcttgttcattggtgactatattcaacc 16893776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27631355 - 27631275
Alignment:
Q  1 aagttaatattatcagtcctatgcaaccaagtataagagtttaacttttcttattaattggtgaccatattcaaccaatttt 82  Q
    ||||||||||||| ||||||||||||  || ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  27631355 aagttaatattattagtcctatgcaaaaaattataa-agtttaacttttcttgttaattggtgaccatattcaaccaatttt 27631275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 27630896 - 27630827
Alignment:
Q  155 ttttagaaacaaccattattttttagttagagatcttgactgacatctcagaacctaattacacatgcaa 224  Q
    |||| ||||||||||||||||| || ||||||||| | ||| ||||||||||||||||||||||||||||    
T  27630896 ttttggaaacaaccattattttctaattagagatcctaactaacatctcagaacctaattacacatgcaa 27630827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 11694894 - 11694820
Alignment:
Q  111 aaatgttgttcaacatacataattaatctctttaccatattagattttagaaacaaccattattttttagttaga 185  Q
    |||| ||||||||| ||||||  | || |||||| || |||||||||| ||||||||||||| ||| ||||||||    
T  11694894 aaatattgttcaacttacatacatgatttctttatcagattagattttggaaacaaccattagtttatagttaga 11694820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 293 - 358
Target Start/End: Complemental strand, 33711755 - 33711690
Alignment:
Q  293 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacatttcttatcccaaccttttttc 358  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  33711755 gaagtggatcgtttaaccgtagcaagagcacgaaaaattgaacgtttcttatcccaacattttttc 33711690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 20765441 - 20765337
Alignment:
Q  111 aaatgttgttcaacatacataattaatctctttaccatattagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaacct 210  Q
    |||||||||||||| ||||||  | || |||||| ||||||||||||| || |||||||||||||| |||||||||||| ||||| |||| |||||| ||    
T  20765441 aaatgttgttcaacttacatacatgatttctttatcatattagattttggacacaaccattattttctagttagagatcctgactaacatatcagaatct 20765342  T
Q  211 aatta 215  Q
    |||||    
T  20765341 aatta 20765337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 26431389 - 26431493
Alignment:
Q  111 aaatgttgttcaacatacataattaatctctttaccatattagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaacct 210  Q
    |||||||||||||| ||||||  | || |||||| || |||||||||| ||||||||| ||||||| |||||||||||| ||||| ||||||||||| ||    
T  26431389 aaatgttgttcaacttacatacatgatttctttatcagattagattttggaaacaaccgttattttctagttagagatcctgactaacatctcagaatct 26431488  T
Q  211 aatta 215  Q
    |||||    
T  26431489 aatta 26431493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 3931998 - 3932074
Alignment:
Q  139 tctttaccatattagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaacctaatta 215  Q
    |||||| || |||||||||| ||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||    
T  3931998 tctttatcaaattagattttggaaacaaccattattttctagttagagatcctgactaacatctcagaatctaatta 3932074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 20765613 - 20765530
Alignment:
Q  1 aagttaatattatcagtcctatgcaaccaagtataa----gagtttaacttttcttattaattggtgaccatattcaaccaatt 80  Q
    ||||||||||| || ||||||||||||||| |||||    ||||| |||| ||||| || ||||||||| ||||||||||||||    
T  20765613 aagttaatattttccgtcctatgcaaccaattataaataagagttcaactgttcttgttcattggtgactatattcaaccaatt 20765530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 7362587 - 7362483
Alignment:
Q  111 aaatgttgttcaacatacataattaatctctttaccatattagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaacct 210  Q
    |||||||||||||| ||||||  |||| |||||| || |||||||||| ||||||||||||||||| |||||||| ||| | ||| ||||||||||| ||    
T  7362587 aaatgttgttcaacttacatacataatttctttatcagattagattttggaaacaaccattattttctagttagatatccttactaacatctcagaatct 7362488  T
Q  211 aatta 215  Q
    |||||    
T  7362487 aatta 7362483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 7362763 - 7362677
Alignment:
Q  1 aagttaatattatcagtcctatgcaaccaagtataa----gagtttaacttttcttattaattggtgaccatattcaaccaatttta 83  Q
    ||||||||||| |  ||||||||||||||| |||||    |||||||||| ||||| || ||||||||| |||||||||||||||||    
T  7362763 aagttaatatttttcgtcctatgcaaccaattataaataagagtttaactgttcttgttcattggtgactatattcaaccaatttta 7362677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 11266365 - 11266262
Alignment:
Q  112 aatgttgttcaacatacataattaatctctttaccatattagattttagaaacaaccattattttttagttagagatcttgactgacatctcagaaccta 211  Q
    ||||||||||||| ||||||  | || |||||| || |||||||||| ||||||||||||||||| |||||||||||| | ||| ||||||||||| |||    
T  11266365 aatgttgttcaacttacatacatgatttctttatcagattagattttggaaacaaccattattttctagttagagatccttactaacatctcagaatcta 11266266  T
Q  212 atta 215  Q
    ||||    
T  11266265 atta 11266262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11266541 - 11266455
Alignment:
Q  1 aagttaatattatcagtcctatgcaaccaagtataa----gagtttaacttttcttattaattggtgaccatattcaaccaatttta 83  Q
    ||||||||||| |  ||||||||||||||| |||||    |||||||||| ||||| || ||||||||| |||||||||||||||||    
T  11266541 aagttaatatttttcgtcctatgcaaccaattataaataagagtttaactgttcttgttcattggtgactatattcaaccaatttta 11266455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1829 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1829
Description:

Target: scaffold1829; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 359
Target Start/End: Original strand, 490 - 556
Alignment:
Q  293 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacatttcttatcccaaccttttttcg 359  Q
    ||||||||||| ||||||||||||||||| ||||||||||| | ||||||||| ||||| |||||||    
T  490 gaagaggatcgcttaaccgtagcaagagcgcgaaaaattgagcgtttcttatcacaaccctttttcg 556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 252574 - 252516
Alignment:
Q  293 gaagaggatcgtttaaccgtagcaagagcacgaaaaattgaacatttcttatcccaacc 351  Q
    ||||||||||||||||| |||||||||||| |||||||||| | ||||||||| |||||    
T  252574 gaagaggatcgtttaactgtagcaagagcaagaaaaattgagcgtttcttatcacaacc 252516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University