View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5549_low_1 (Length: 882)
Name: NF5549_low_1
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5549_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 748; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 19 - 873
Target Start/End: Original strand, 37810019 - 37810871
Alignment:
| Q |
19 |
gataccgcacacaaatgaacacttcctaaatggaagcgagaaagttcacaccactaaatgatatagaaaatctataattgttctagacatcattgaccac |
118 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37810019 |
gataccgcacacaaatggacacttcctaaatggaagcgagaaagttcacaccactaaatgatatagcaaatctataattgttctagacatcattgaccac |
37810118 |
T |
|
| Q |
119 |
aggaaacaaaggagcaccaacagctattgtatttcttattttgttnnnnnnnnnnctccaataaaagcaattgcataactgttaactcaccaaaagactg |
218 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37810119 |
aggaaacaaaggagcaccaacagctatggtatttcttattttgttcaaaaaaa--ctccactaaaagcaattgcataactgttaactcaccaaaagactg |
37810216 |
T |
|
| Q |
219 |
gataggcatccaaataatgttgaccaaaaacattagaggacaattcaaacagcatcatcatctgtatagttgacagcttggtcccaataatgaggaaccc |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
37810217 |
gataggcatccaaataatgttgaccaaaaacattagaggacaattcaaacagcatcatcatctgtatagttgacagcttggtaccaataatgaagaaccc |
37810316 |
T |
|
| Q |
319 |
cagcatccacaaaaactttacgagcagctgcttcagtgatgcagtaatgaacactgaacctattgaagctcgatttggcaacatttccttgccacaccag |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37810317 |
cagcatccacaaaaactttacgagcagctgcttcagtgatgcagtcatgaacactgaacctattgaagctcgatttggcaacacttccttgccacaccag |
37810416 |
T |
|
| Q |
419 |
aacacatttataggcatagcctgaatcttcattatcttctatctcttttgaaacatcacaccatttaatacgtctaagcataagtttcccatacctctta |
518 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37810417 |
aacacatttattggcatcgcctgaatcttcattatcttctttctcttttgaaacatcacgccatttaatacgtctaagcataagtttcccatacctctta |
37810516 |
T |
|
| Q |
519 |
attgacttgcttccaccttcaacaacgacaacgctaataccatcacgaatcaccgcacatccagtcaaacgattttcttgagcattagcataaactctaa |
618 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37810517 |
attgacttgcttccaccttcaaccacgacaacgctaataccatcacaaatcaccgcacatccagtcaaacgattttcttgagcattagcataaactctaa |
37810616 |
T |
|
| Q |
619 |
agcgggctttgtgatgagaaaggtcatttaccctgtaaagtgagacaagtgtgtccaatgtatttgggtcatcaaacaatttcctttccttcttctcacg |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37810617 |
agcgggctttgtgatgagaaaggtcatttaccctgtaaagtgagacaagtgtgtccaatgtatttgggtcatcaaacaacttcctttccttcttctcacg |
37810716 |
T |
|
| Q |
719 |
cagctcagcaggagtaagcttgcgtgcaatattcctatctatgtgagcctgcccacgctcagcagctgcattacgtacttccttttcaagccgggtggga |
818 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37810717 |
cagctcagcaggagtaagcttgtgtgcaatattcctatctatgtgagcctgctcacgctcggcagctgcattacgtacttccttttcaagccgggtggga |
37810816 |
T |
|
| Q |
819 |
tcttgagttgcttcagtccctagtaccttatgtaaattactcatcttgacctttg |
873 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37810817 |
tcttgagttgcttcagtccctagtaccttatgtaaattactcatcttgacctttg |
37810871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 32 - 873
Target Start/End: Original strand, 52351891 - 52352740
Alignment:
| Q |
32 |
aatgaacacttcctaaatggaagcgagaaagttcacaccactaaatgatatagaaaatctataattgttctagacatcattgaccacaggaaacaaagga |
131 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||||||||| |||||| ||| |
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| T |
52351891 |
aatgcacacttcctaattggaagcgagaaagttcacaccactaaatgatatagcaaatctatcattgttgtaggcatcattgaccacagcaaacaaggga |
52351990 |
T |
|
| Q |
132 |
g--caccaacagctattgtatttcttattttgttnnnnnnnnnnctccaataaaagcaattgcataactgttaactcaccaaaagactggataggcatcc |
229 |
Q |
| |
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| ||||||||||||| | ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52351991 |
gagcaccaacagctatggcatttcttattttgttcaaaaaa---ctccactagaagcaattgcataactgttaactcaccaaaagactggataggcatcc |
52352087 |
T |
|
| Q |
230 |
aaataatgttgaccaaaaacattagaggacaattcaaacagcatcatcatctgtatagttgacagcttggtcccaataatgaggaaccccagcatccaca |
329 |
Q |
| |
|
||| ||||| |||||||||| |||| |||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52352088 |
taattatgttaaccaaaaacactagaagacaattcaaacagcatcgtcctccgtatagttgacagcttggtcccaataatgaggaaccccagcatccaca |
52352187 |
T |
|
| Q |
330 |
aaaactttacgagcagctgcttcagtgatgcagtaatgaacactgaacctattgaagctcgatttggcaacatttccttgccacaccagaacacatttat |
429 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
52352188 |
aacactttacgagcagctgcttcagtgatgcagtcatgaacactgaacctattgaagctcgatttggcaacacttccttgccacaccagaacacatttat |
52352287 |
T |
|
| Q |
430 |
----aggc-----atagcctgaatcttcattatcttctatctcttttgaaacatcacaccatttaatacgtctaagcataagtttcccatacctcttaat |
520 |
Q |
| |
|
|||| || | ||||||| |||| ||||||| |||||||||||||||| | ||| || || |||||||||||||||||||||||||||||||| |
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| T |
52352288 |
tcgcaggcttttcatcgtctgaatcctcatcatcttctttctcttttgaaacatcgctccaattgatgcgtctaagcataagtttcccatacctcttaat |
52352387 |
T |
|
| Q |
521 |
tgacttgcttccaccttcaacaacgacaacgctaataccatcacgaatcaccgcacatccagtcaaacgattttcttgagcattagcataaactctaaag |
620 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
52352388 |
tgacttgcttccaccttcaaccacaacaacgctaataccatcacaaatcacagcacatccagtcaaacgattttcttgagcattaacatcaactctaaag |
52352487 |
T |
|
| Q |
621 |
cgggctttgtgatgagaaaggtcatttaccctgtaaagtgagacaagtgtgtccaatgtatttgggtcatcaaacaatttcctttccttcttctcacgca |
720 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||| |
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|
| T |
52352488 |
cgggccttgggatgagagaggtcatttaccctgtaaagtgagacaagtgtgtccaatgaatttgggtcatcaaagagcttcctttctttcttctcacgca |
52352587 |
T |
|
| Q |
721 |
gctcagcaggagtaagcttgcgtgcaatattcctatctatgtgagcctgcccacgctcagcagctgcattacgtacttccttttcaagccgggtgggatc |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
52352588 |
gctcagcaggagtaagcttgcgtgcaatattcctatctatgtgagcctgctcacgctcagcagcagcattacgtacttccttttcaagccgggtgggatc |
52352687 |
T |
|
| Q |
821 |
ttgagttgcttcagtccctagtaccttatgtaaattactcatcttgacctttg |
873 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52352688 |
ttgagttgcttcagtccctagtaccttatgtaaattactcatcttgacctttg |
52352740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 486 - 873
Target Start/End: Original strand, 17199198 - 17199574
Alignment:
| Q |
486 |
atacgtctaagcataagtttcccatacctcttaattgacttgcttccaccttcaacaacgacaacgctaataccatcacgaatcaccgcacatccagtca |
585 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||||||||||||||||||||| || |||| |||||| ||||||| ||| |||||||||||||||| |
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|
| T |
17199198 |
atacggctaagcataagtttcctat--ctcttaattgacttgcttccaccttcaaccacaacaatgctaatgccatcacaaattaccgcacatccagtca |
17199295 |
T |
|
| Q |
586 |
aacgattttcttgagcattagcataaactctaaagcgggctttgtgatgagaaaggtcatttaccctgtaaagtgagacaagtgtgtccaatgtatttgg |
685 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17199296 |
aacgattttcttgagca---------actctaaagcgggcattgggatgagagaggccatttaccctgtaaagtgagacaagtgtgtccaatgtatttgg |
17199386 |
T |
|
| Q |
686 |
gtcatcaaacaatttcctttccttcttctcacgcagctcagcaggagtaagcttgcgtgcaatattcctatctatgtgagcctgcccacgctcagcagct |
785 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
17199387 |
ctcatcaaacagtttccttttcttcttctcgcgcagctcagcaggagtaagcttgcgtgcaatattcctatctatgtgagcctgctcacgctcagcagtt |
17199486 |
T |
|
| Q |
786 |
gcattacgtacttccttttcaagccgggtgggatcttgagttgcttcagtccctagtaccttatgtaaattactcatcttgacctttg |
873 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
17199487 |
gcattacgtacttccttttcaagccgggtgggatcttgagtcgcttctgtccctagtaccttatgtaaattactcatcttgatctttg |
17199574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 17198600 - 17198673
Alignment:
| Q |
174 |
ctccaataaaagcaattgcataactgttaactcaccaaaagactggataggcatccaaataatgttgaccaaaa |
247 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
17198600 |
ctccactagaagcaattgcatatctgttaactcaccaaaagactggataggcatcctaataatgttgaccaaaa |
17198673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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