View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5549_low_10 (Length: 279)
Name: NF5549_low_10
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5549_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 28982349 - 28982245
Alignment:
| Q |
174 |
ctcacaagttacgattttgattatccatagtatcatcctatccttggggaaaacaatatttttcatgctggtgtaagagtaaatgactctagaataatct |
273 |
Q |
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| T |
28982349 |
ctcacaagttacgattttgattatccatagtatcatcccatccttggggaaaacaatattttccatgctggtgtaagagtaaatgactctagaaaaaact |
28982250 |
T |
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| Q |
274 |
accca |
278 |
Q |
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||||| |
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| T |
28982249 |
accca |
28982245 |
T |
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Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 28982514 - 28982443
Alignment:
| Q |
15 |
aggagctcttccggctaaactggatccaagcctagtacacttgtactctccttggtatatagtcctgcattt |
86 |
Q |
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| T |
28982514 |
aggagctcttccagctaaactggatccaagcctagtacacttgtactctccttagtatatagtcctgcattt |
28982443 |
T |
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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 8624021 - 8623931
Alignment:
| Q |
174 |
ctcacaagttacgattttgattatccatagtatcatcctatcctt-ggggaaaacaatatttttcatgctggtgtaagagtaaatgactct |
263 |
Q |
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| T |
8624021 |
ctcacaagctgcgattttgattatccatagtatcatcccatccttgggggaaaataagattgtccatgctggtgtaagagtaaatgactct |
8623931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 8624164 - 8624093
Alignment:
| Q |
15 |
aggagctcttccggctaaactggatccaagcctagtacacttgtactctccttggtatatagtcctgcattt |
86 |
Q |
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| T |
8624164 |
aggaggtctaccagctaaattggatccaagcccagtacacttgtactctccatagtacacagtcctgcattt |
8624093 |
T |
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