View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5549_low_13 (Length: 245)
Name: NF5549_low_13
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5549_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2795719 - 2795492
Alignment:
| Q |
1 |
tgtacaaagataagaacctgatgctttccggcttcagccataactttctcaaagcagatatcattcatcaactggtacctttgaaaaggcttcttcactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795719 |
tgtacaaagataagaacctgatgctttccggcttcagccataactttctcaaagcagatatcattcatcaactggtacctttgaaaaggcttcttcactg |
2795620 |
T |
|
| Q |
101 |
taattccaataaactgctgagaaagaggaacgggtctataactattatcaaagtaaaacaaccccttattatgatcaacacgcaagaaccgtgccacgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2795619 |
taattccaataaactgctgagaaagaggaacgggtctataactattatcaaagtaaaacaaccccttattatgatcaacacgcaagaaccgcgccacgtc |
2795520 |
T |
|
| Q |
201 |
ttcaaaattagggagtgtagcagacaat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2795519 |
ttcaaaattagggagtgtagcagacaat |
2795492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 29263232 - 29263005
Alignment:
| Q |
1 |
tgtacaaagataagaacctgatgctttccggcttcagccataac-tttctcaaagcagatatcattcatcaactggtacctttgaaaaggcttcttcact |
99 |
Q |
| |
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|||||||||||||||||||||||||| || ||| || ||| ||| |||| || ||||||||||||||||||||| |||| |||| ||||||||| | | |
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| T |
29263232 |
tgtacaaagataagaacctgatgcttaccagctacatccagaacctttcggtaa-cagatatcattcatcaactggaacctctgaagaggcttctttatt |
29263134 |
T |
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| Q |
100 |
gtaattccaataaactgctgagaaagaggaacgggtctataactattatcaaagtaaaacaaccccttattatgatcaacacgcaagaaccgtgccacgt |
199 |
Q |
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|| ||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| || |||||||||||| |||| ||||||| | |
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| T |
29263133 |
gtgattccaatatactgctgagaaagaggaacaggtctataactgttatcaaaataaaataaacccttgttcagatcaacacgcaggaacagtgccacat |
29263034 |
T |
|
| Q |
200 |
cttcaaaattagggagtgtagcagacaat |
228 |
Q |
| |
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||||| |||||||||| ||||| |||||| |
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| T |
29263033 |
cttcataattagggagagtagccgacaat |
29263005 |
T |
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