View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5549_low_14 (Length: 245)
Name: NF5549_low_14
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5549_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 2795946 - 2796181
Alignment:
| Q |
3 |
gcttctggacatgttcaagttttggtatccactgctacccttgcctggggtgtgaatctcccggctcatacggttataattaaagggacaaagatttata |
102 |
Q |
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| T |
2795946 |
gcttctggacatgttcaagttttggtatccactgctacccttgcctggggtgtgaatctcccggctcatacggttataattaaagggacaaagatttata |
2796045 |
T |
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| Q |
103 |
atcctgaaaagggagcatggactgaattgagtcctcttgatgtgatgcagatgttgggtcgtgccggaaggccacagtatgactcatgtggtgagggaat |
202 |
Q |
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| T |
2796046 |
atcctgaaagaggagcatggactgaattgagtcctcttgatgtgatgcagatgttgggtcgtgccggaaggccacagtatgactcatgtggtatgggaat |
2796145 |
T |
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| Q |
203 |
tgttgttactggccatagtgagttgcagtattatct |
238 |
Q |
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| T |
2796146 |
tgttgttactggccatagtgagttgcagtattatct |
2796181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 29263464 - 29263691
Alignment:
| Q |
8 |
tggacatgttcaagttttggtatccactgctacccttgcctggggtgtgaatctcccggctcatacggttataattaaagggacaaagatttataatcct |
107 |
Q |
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| T |
29263464 |
tggacatgctcaagttttggtatccactgccacccttgcatggggtgtgaatcttccagctcacactgttataattaaagggacacagatttataatccc |
29263563 |
T |
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| Q |
108 |
gaaaagggagcatggactgaattgagtcctcttgatgtgatgcagatgttgggtcgtgccggaaggccacagtatgactcatgtggtgagggaattgttg |
207 |
Q |
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| T |
29263564 |
gaaaagggggcctggactgaactgagtccacttgacgttatgcagatgttgggtcgtgccggaaggcctcaatatgactcttatggtgagggaattattc |
29263663 |
T |
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| Q |
208 |
ttactggccatagtgagttgcagtatta |
235 |
Q |
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| T |
29263664 |
ttacgggccacagtgagttgcaatatta |
29263691 |
T |
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