View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5549_low_16 (Length: 240)

Name: NF5549_low_16
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5549_low_16
NF5549_low_16
[»] chr3 (4 HSPs)
chr3 (1-225)||(42615851-42616075)
chr3 (1-187)||(37613266-37613453)
chr3 (9-225)||(186734-186951)
chr3 (1-133)||(12126955-12127090)
[»] chr1 (3 HSPs)
chr1 (1-225)||(3931532-3931757)
chr1 (1-187)||(20765653-20765840)
chr1 (1-187)||(26430984-26431171)
[»] chr7 (1 HSPs)
chr7 (1-225)||(27838510-27838734)
[»] chr5 (3 HSPs)
chr5 (1-225)||(22604456-22604680)
chr5 (1-225)||(29251495-29251720)
chr5 (1-187)||(36367984-36368171)
[»] chr4 (4 HSPs)
chr4 (1-225)||(33488202-33488426)
chr4 (1-225)||(43016412-43016636)
chr4 (57-225)||(1697606-1697774)
chr4 (1-111)||(16893895-16894008)
[»] chr6 (2 HSPs)
chr6 (1-225)||(11266581-11266806)
chr6 (158-225)||(14450534-14450601)
[»] chr8 (2 HSPs)
chr8 (1-225)||(11695106-11695332)
chr8 (1-97)||(27631395-27631491)
[»] chr2 (1 HSPs)
chr2 (1-208)||(7362803-7363008)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42616075 - 42615851
Alignment:
Q  1 cttaacctatattcttagaaaaatgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaat 100  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42616075 cttaacctatattcttagaaaaatgcatcagcattgttaaaacaaatgaaaattaacatctatgtaaaaagtcgttgaaacaagatgcatacatttaaat 42615976  T
Q  101 ataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgacagataatcttaatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  42615975 ataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttataaactacagaatataactttcatgcaatgacaaataatcttaatc 42615876  T
Q  201 attgaaaagcacgagaatgtttact 225  Q
    |||||||||||||||||||||||||    
T  42615875 attgaaaagcacgagaatgtttact 42615851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 37613453 - 37613266
Alignment:
Q  1 cttaacctatattcttagaaaaa-tgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaa 99  Q
    ||||||| ||||||||||||||| |||||||  |||||||||||||||||||| |||||||| |||||||| ||| | ||||| | ||||||||||||||    
T  37613453 cttaaccaatattcttagaaaaaatgcatcaacattgttgaaacaaatgaaaaataacatctctgtaaaaaattgctaaaacatgttgcatacatttaaa 37613354  T
Q  100 tataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgaca 187  Q
     | ||||||||| |||||||||||||||||||||| ||||||||||||  | |||| ||||||| |||||||||||||||||||||||    
T  37613353 gacaaaaatgttaatagcattccatgaaaacacatttgtagaaacaatcgtgttacgaactacataatataactttcatgcaatgaca 37613266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 186734 - 186951
Alignment:
Q  9 atattcttagaaaaa-tgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaatataaaaa 107  Q
    ||||||||||||||| |||| ||  ||||||||||||||||||||||||||||| |||||||| ||| | ||||| | |||||| ||||||| | |||||    
T  186734 atattcttagaaaaaatgcaccaacattgttgaaacaaatgaaaattaacatctctgtaaaaaattgctaaaacatgttgcatatatttaaagacaaaaa 186833  T
Q  108 tgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgacagataatcttaatcattgaaa 207  Q
    |||| |||||||||||| ||||||||| |||||||||||||   |||| ||||||| |||||||||||||||||||||||  |||| |||||||||||||    
T  186834 tgttaatagcattccataaaaacacatttgtagaaacaatggcgttacgaactacataatataactttcatgcaatgacacctaattttaatcattgaaa 186933  T
Q  208 agcacgagaatgtttact 225  Q
    | ||  | ||||||||||    
T  186934 aacattaaaatgtttact 186951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 12126955 - 12127090
Alignment:
Q  1 cttaacctatattcttagaaaaa-tgcatcagtattgttgaaacaaatgaaaattaacatctatgt--aaaaagttgttgaaacaagatgcatacattta 97  Q
    |||| |||||||||||||||||| || ||||  |||||||||||||||| |||||||||||| |||  ||||| |||  ||||||  |||||||||||||    
T  12126955 cttatcctatattcttagaaaaaatgaatcaacattgttgaaacaaatggaaattaacatctctgtaaaaaaaattgcggaaacagaatgcatacattta 12127054  T
Q  98 aatataaaaatgtttatagcattccatgaaaacaca 133  Q
     | |||||||| |||||| ||||| |||||||||||    
T  12127055 gagataaaaatatttataacattctatgaaaacaca 12127090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3931757 - 3931532
Alignment:
Q  1 cttaacctatattcttagaaaaa-tgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaa 99  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||| | ||||| | ||||||||||||||    
T  3931757 cttaaccaatattcttagaaaaaatgcatcagcattgttgaaacaaatgaaaattaacatctctgtaaaaaattgctaaaacatgttgcatacatttaaa 3931658  T
Q  100 tataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgacagataatcttaat 199  Q
     | ||||||||| |||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||||||||||||||||||||||  |||| |||||    
T  3931657 gacaaaaatgttaatagcattccatgaaaacacatttgtagaaacaatggtgttacgaactacataatataactttcatgcaatgacacctaattttaat 3931558  T
Q  200 cattgaaaagcacgagaatgtttact 225  Q
    ||||||||| ||  | ||||||||||    
T  3931557 cattgaaaaacattaaaatgtttact 3931532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 20765653 - 20765840
Alignment:
Q  1 cttaacctatattcttagaaaa-atgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaa 99  Q
    ||||||| |||||||||||||| ||||||||  ||||||||||||||||||||||||||||| |||||||| ||| | ||||| | ||||||||||||||    
T  20765653 cttaaccaatattcttagaaaaaatgcatcaacattgttgaaacaaatgaaaattaacatctctgtaaaaaattgctaaaacatgttgcatacatttaaa 20765752  T
Q  100 tataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgaca 187  Q
     | ||||||||| |||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||||||||||||||||||||||    
T  20765753 gacaaaaatgttaatagcattccatgaaaacacatttgtagaaacaatggtgttacgaactacataatataactttcatgcaatgaca 20765840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 26431171 - 26430984
Alignment:
Q  1 cttaacctatattcttagaaaaa-tgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaa 99  Q
    ||||||| ||||||||||||||| || ||||  ||||||||||||||||||||||||||||| |||||||| ||| | ||||| | ||||||||||||||    
T  26431171 cttaaccaatattcttagaaaaaatgtatcaacattgttgaaacaaatgaaaattaacatctctgtaaaaaattgctaaaacatgttgcatacatttaaa 26431072  T
Q  100 tataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgaca 187  Q
     | ||||||||| |||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||||||||||||||||||||||    
T  26431071 aacaaaaatgttaatagcattccatgaaaacacatttgtagaaacaatggtgttacgaactacataatataactttcatgcaatgaca 26430984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27838510 - 27838734
Alignment:
Q  1 cttaacctatattcttagaaaaatgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaat 100  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||| | ||||| |  |||||||||||||     
T  27838510 cttaaccaatattcttagaaaaatgcatcaacattgttgaaacaaatgaaaattaacatctttgtaaaaaattgctaaaacatgtcgcatacatttaaag 27838609  T
Q  101 ataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgacagataatcttaatc 200  Q
    | ||||||||| |||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||||||||||||||||||||||  |||| ||||||    
T  27838610 acaaaaatgttaatagcattccatgaaaacacatttgtagaaacaatggtgttacgaactacataatataactttcatgcaatgacacctaattttaatc 27838709  T
Q  201 attgaaaagcacgagaatgtttact 225  Q
    |||||||| ||  | ||||||||||    
T  27838710 attgaaaaacattaaaatgtttact 27838734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22604680 - 22604456
Alignment:
Q  1 cttaacctatattcttagaaaaatgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaat 100  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||| | ||||| |  |||||||||||||     
T  22604680 cttaaccaatattcttagaaaaatgcatcaacattgttgaaacaaatgaaaattaacatctctgtaaaaaattgctaaaacatgtcgcatacatttaaag 22604581  T
Q  101 ataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgacagataatcttaatc 200  Q
    | ||||||||| |||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||||||||||||||||||||||  |||| ||||||    
T  22604580 acaaaaatgttaatagcattccatgaaaacacatttgtagaaacaatggtgttacgaactacataatataactttcatgcaatgacacctaattttaatc 22604481  T
Q  201 attgaaaagcacgagaatgtttact 225  Q
    |||||||| ||  | ||||||||||    
T  22604480 attgaaaaacattaaaatgtttact 22604456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 29251720 - 29251495
Alignment:
Q  1 cttaacctatattcttagaaaaa-tgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaa 99  Q
    |||||||||||| | |||||||| |||||||  |||||||||||||||| |||||||||||| ||||||||  ||| |||||| ||||||||||||||||    
T  29251720 cttaacctatatacgtagaaaaaatgcatcaacattgttgaaacaaatggaaattaacatctctgtaaaaaaatgtcgaaacatgatgcatacatttaaa 29251621  T
Q  100 tataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgacagataatcttaat 199  Q
     |||||||| |||||| ||||| ||| |  ||||| ||||||||||||||| |||||||||||| ||||||||||||||| |||||||  ||||||||||    
T  29251620 gataaaaatatttataacattcaatggatgcacatttgtagaaacaatgatgttacaaactacataatataactttcatgaaatgacacctaatcttaat 29251521  T
Q  200 cattgaaaagcacgagaatgtttact 225  Q
    |||||||||||| |||||||||||||    
T  29251520 cattgaaaagcatgagaatgtttact 29251495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 36368171 - 36367984
Alignment:
Q  1 cttaacctatattcttagaaaaa-tgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaa 99  Q
    ||||||| ||||||||||||||| |||||||  ||||||||||||||||||||||||||||| |||||||| ||| | ||||| | ||||||||||||||    
T  36368171 cttaaccaatattcttagaaaaaatgcatcaacattgttgaaacaaatgaaaattaacatctctgtaaaaaattgctaaaacatgttgcatacatttaaa 36368072  T
Q  100 tataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgaca 187  Q
     | ||||||||| |||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||||||||||||||||||||||    
T  36368071 gacaaaaatgttaatagcattccatgaaaacacatttgtagaaacaatggtgttacgaactacataatataactttcatgcaatgaca 36367984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 33488426 - 33488202
Alignment:
Q  1 cttaacctatattcttagaaaaatgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaat 100  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||| | ||||| |  |||||||||||||     
T  33488426 cttaaccaatattcttagaaaaatgcatcaacattgttgaaacaaatgaaaattaacatctctgtaaaaaattgctaaaacatgtcgcatacatttaaag 33488327  T
Q  101 ataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgacagataatcttaatc 200  Q
    | ||||||||| |||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||||||||||||||||||||||  |||| ||||||    
T  33488326 acaaaaatgttaatagcattccatgaaaacacatttgtagaaacaatggtgttacgaactacataatataactttcatgcaatgacacctaattttaatc 33488227  T
Q  201 attgaaaagcacgagaatgtttact 225  Q
    |||||||| ||  | ||||||||||    
T  33488226 attgaaaaacattaaaatgtttact 33488202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 43016636 - 43016412
Alignment:
Q  1 cttaacctatattcttagaaaaatgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaat 100  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||| | ||||| |  |||||||||||||     
T  43016636 cttaaccaatattcttagaaaaatgcatcaacattgttgaaacaaatgaaaattaacatctctgtaaaaaattgctaaaacatgtcgcatacatttaaag 43016537  T
Q  101 ataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgacagataatcttaatc 200  Q
    | ||||||||| |||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||||||||||||||||||||||  |||| ||||||    
T  43016536 acaaaaatgttaatagcattccatgaaaacacatttgtagaaacaatggtgttacgaactacataatataactttcatgcaatgacacctaattttaatc 43016437  T
Q  201 attgaaaagcacgagaatgtttact 225  Q
    |||||||| ||  | ||||||||||    
T  43016436 attgaaaaacattaaaatgtttact 43016412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 57 - 225
Target Start/End: Original strand, 1697606 - 1697774
Alignment:
Q  57 catctatgtaaaaagttgttgaaacaagatgcatacatttaaatataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttaca 156  Q
    ||||| |||||||| ||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||| |||||||  ||||||||||||||| |||||    
T  1697606 catctctgtaaaaaattgctgaaacaggatgcatacatttaaagataaaaatgtttataacattccatggaaacacaattgtagaaacaatgatgttaca 1697705  T
Q  157 aactacaaaatataactttcatgcaatgacagataatcttaatcattgaaaagcacgagaatgtttact 225  Q
    ||||||| | |||||||||||| ||||||||  |||||||| ||||||||||||| |||||||||||||    
T  1697706 aactacatagtataactttcatacaatgacacctaatcttactcattgaaaagcatgagaatgtttact 1697774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 16893895 - 16894008
Alignment:
Q  1 cttaacctatattctt--agaaaaatgcatcagtattgttgaaacaaatgaaaattaacatctatgt-aaaaagttgttgaaacaagatgcatacattta 97  Q
    |||||||||||||| |  | ||||||||||||  ||||||||||||||||||||||||||||| ||| ||||| ||| | ||||| | || |||||||||    
T  16893895 cttaacctatattcatgaaaaaaaatgcatcaacattgttgaaacaaatgaaaattaacatctctgtaaaaaaattgctaaaacaggttgtatacattta 16893994  T
Q  98 aatataaaaatgtt 111  Q
    || | |||||||||    
T  16893995 aagacaaaaatgtt 16894008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11266581 - 11266806
Alignment:
Q  1 cttaacctatattcttagaaaa-atgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaa 99  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| |||||||| ||| | ||||| | ||||||| ||||||    
T  11266581 cttaacctatattcttagaaaatatgcatcaacattgttgaaacaaatgaaaattaacatctctgtaaaaaattgctaaaacatgttgcatacttttaaa 11266680  T
Q  100 tataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgacagataatcttaat 199  Q
    || ||||||||| ||||||||||||||||| |||| ||||||||||||| | |||| ||||||| |||||||||||||||||||||||  |||| |||||    
T  11266681 tacaaaaatgttaatagcattccatgaaaatacatttgtagaaacaatggtgttacgaactacataatataactttcatgcaatgacacctaattttaat 11266780  T
Q  200 cattgaaaagcacgagaatgtttact 225  Q
    ||||||||| ||  | ||||||||||    
T  11266781 cattgaaaaacattaaaatgtttact 11266806  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 14450601 - 14450534
Alignment:
Q  158 actacaaaatataactttcatgcaatgacagataatcttaatcattgaaaagcacgagaatgtttact 225  Q
    |||||| ||||||||||||||||||||     |||||||||||||||||||||| |||||||||||||    
T  14450601 actacataatataactttcatgcaatggtgcctaatcttaatcattgaaaagcatgagaatgtttact 14450534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11695106 - 11695332
Alignment:
Q  1 cttaacctatattcttagaaaa--atgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaa 98  Q
    ||||||| ||||||||||||||  ||||||||  ||||||||||||||||||||||||||||| |||||||| ||| | ||||| | ||||||| |||||    
T  11695106 cttaaccaatattcttagaaaaaaatgcatcaacattgttgaaacaaatgaaaattaacatctctgtaaaaaattgctaaaacatgttgcatacgtttaa 11695205  T
Q  99 atataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgacagataatcttaa 198  Q
    | | ||||||||| |||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||||||||||||||||||||||  |||| ||||    
T  11695206 agacaaaaatgttaatagcattccatgaaaacacatttgtagaaacaatggtgttacgaactacataatataactttcatgcaatgacacctaattttaa 11695305  T
Q  199 tcattgaaaagcacgagaatgtttact 225  Q
    || ||||||| ||  | ||||||||||    
T  11695306 tcgttgaaaaacattaaaatgtttact 11695332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 27631395 - 27631491
Alignment:
Q  1 cttaacctatattcttagaaaaa-tgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacattta 97  Q
    ||||||||||||||||||||||| |||||||  ||||| ||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||    
T  27631395 cttaacctatattcttagaaaaaatgcatcaacattgt-gaaacaaatgaaaattaacatctctgtaaaaaattgctgaaacaggatgcatacattta 27631491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 7362803 - 7363008
Alignment:
Q  1 cttaacctatattcttagaaaa-atgcatcagtattgttgaaacaaatgaaaattaacatctatgtaaaaagttgttgaaacaagatgcatacatttaaa 99  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||   ||||||| ||| | ||||| | ||||||||||||||    
T  7362803 cttaacctatattcttagaaaaaatgcatcaacattgttgaaacaaatgaaaattaacatc-cggtaaaaaattgctaaaacatgttgcatacatttaaa 7362901  T
Q  100 tataaaaatgtttatagcattccatgaaaacacatatgtagaaacaatgatcttacaaactacaaaatataactttcatgcaatgacagataatcttaat 199  Q
     | ||||||||| || ||| ||||||||||||||| |||| |||||||| | |||| ||||||| |||||||| ||||||||||||||  |||| |||||    
T  7362902 gacaaaaatgttaattgca-tccatgaaaacacatttgtataaacaatggtgttacgaactacataatataac-ttcatgcaatgacacctaattttaat 7362999  T
Q  200 cattgaaaa 208  Q
    |||||||||    
T  7363000 cattgaaaa 7363008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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