View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5549_low_2 (Length: 666)

Name: NF5549_low_2
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5549_low_2
NF5549_low_2
[»] chr7 (52 HSPs)
chr7 (16-649)||(20334109-20334742)
chr7 (481-585)||(8118268-8118372)
chr7 (472-593)||(8568524-8568655)
chr7 (471-552)||(31287800-31287881)
chr7 (471-584)||(524855-524968)
chr7 (473-585)||(27054720-27054832)
chr7 (472-556)||(32942096-32942180)
chr7 (481-592)||(29628098-29628209)
chr7 (471-556)||(23032654-23032739)
chr7 (471-556)||(23729368-23729453)
chr7 (500-556)||(35820104-35820160)
chr7 (484-556)||(48642773-48642845)
chr7 (507-553)||(40848867-40848913)
chr7 (471-556)||(16535760-16535845)
chr7 (471-556)||(16629817-16629902)
chr7 (508-585)||(24361482-24361559)
chr7 (471-556)||(34750968-34751053)
chr7 (508-592)||(37375341-37375430)
chr7 (485-593)||(46147210-46147323)
chr7 (474-593)||(10338786-10338910)
chr7 (503-585)||(24361276-24361358)
chr7 (493-554)||(4153746-4153807)
chr7 (508-593)||(21237756-21237841)
chr7 (472-585)||(32823586-32823698)
chr7 (504-572)||(11206359-11206427)
chr7 (471-539)||(11834533-11834601)
chr7 (472-579)||(13852290-13852402)
chr7 (472-544)||(26215153-26215225)
chr7 (471-543)||(27456340-27456412)
chr7 (503-577)||(7685914-7685988)
chr7 (483-597)||(7697277-7697400)
chr7 (489-542)||(23707134-23707187)
chr7 (472-537)||(47903229-47903294)
chr7 (472-572)||(7209270-7209370)
chr7 (508-568)||(25007348-25007408)
chr7 (484-556)||(49011243-49011314)
chr7 (481-556)||(6880123-6880198)
chr7 (508-554)||(32237665-32237712)
chr7 (509-556)||(43202447-43202494)
chr7 (505-556)||(20306629-20306676)
chr7 (504-585)||(26524924-26525010)
chr7 (613-646)||(31287692-31287725)
chr7 (472-585)||(31982984-31983097)
chr7 (472-537)||(43429157-43429222)
chr7 (508-556)||(2308132-2308180)
chr7 (485-537)||(3213258-3213310)
chr7 (485-537)||(8768999-8769051)
chr7 (485-537)||(10671815-10671867)
chr7 (504-556)||(33434125-33434177)
chr7 (472-544)||(43908657-43908729)
chr7 (485-537)||(47069663-47069715)
chr7 (485-537)||(47204493-47204545)
[»] chr6 (28 HSPs)
chr6 (474-593)||(9686041-9686160)
chr6 (472-578)||(24644948-24645053)
chr6 (481-592)||(14940553-14940664)
chr6 (472-549)||(22413819-22413896)
chr6 (472-648)||(29048108-29048282)
chr6 (471-556)||(892358-892443)
chr6 (472-585)||(10590832-10590945)
chr6 (471-592)||(8064474-8064596)
chr6 (472-595)||(31945402-31945525)
chr6 (473-532)||(30752513-30752572)
chr6 (503-556)||(19135129-19135182)
chr6 (496-556)||(7170114-7170174)
chr6 (485-572)||(12270551-12270638)
chr6 (476-572)||(6266889-6266985)
chr6 (472-585)||(35040203-35040311)
chr6 (475-585)||(5287892-5288002)
chr6 (471-556)||(11417035-11417121)
chr6 (471-556)||(29128973-29129058)
chr6 (470-562)||(9909047-9909139)
chr6 (472-523)||(26645434-26645485)
chr6 (472-523)||(26751400-26751451)
chr6 (485-555)||(28632929-28632999)
chr6 (47-104)||(6441792-6441849)
chr6 (472-537)||(10494417-10494482)
chr6 (471-556)||(32190687-32190772)
chr6 (485-537)||(5874188-5874240)
chr6 (473-537)||(13810905-13810969)
chr6 (472-528)||(15859707-15859763)
[»] chr3 (35 HSPs)
chr3 (471-593)||(55467617-55467744)
chr3 (472-592)||(38651970-38652089)
chr3 (472-556)||(54122002-54122086)
chr3 (472-556)||(26758205-26758289)
chr3 (485-593)||(45915184-45915291)
chr3 (470-556)||(22257516-22257602)
chr3 (484-556)||(42363242-42363314)
chr3 (471-556)||(17144747-17144831)
chr3 (472-553)||(45629174-45629255)
chr3 (472-585)||(6004375-6004488)
chr3 (472-556)||(8557975-8558059)
chr3 (472-592)||(20846451-20846582)
chr3 (504-556)||(44650977-44651029)
chr3 (486-586)||(50578985-50579089)
chr3 (471-556)||(2832411-2832501)
chr3 (506-592)||(52632054-52632140)
chr3 (484-593)||(46253413-46253521)
chr3 (484-556)||(51191698-51191770)
chr3 (508-583)||(55129746-55129821)
chr3 (489-594)||(27054073-27054183)
chr3 (472-556)||(26291973-26292057)
chr3 (485-572)||(51149658-51149745)
chr3 (472-537)||(43030398-43030463)
chr3 (485-572)||(34794589-34794676)
chr3 (509-556)||(37045328-37045374)
chr3 (483-542)||(40483915-40483974)
chr3 (510-556)||(4554705-4554751)
chr3 (472-585)||(32880282-32880395)
chr3 (512-556)||(25465821-25465865)
chr3 (492-572)||(48032850-48032929)
chr3 (507-594)||(4280296-4280383)
chr3 (485-556)||(4669664-4669735)
chr3 (509-556)||(10481662-10481709)
chr3 (489-556)||(48167259-48167325)
chr3 (492-585)||(50562558-50562651)
[»] chr4 (44 HSPs)
chr4 (472-592)||(48293386-48293506)
chr4 (472-593)||(23449964-23450085)
chr4 (484-603)||(41325089-41325203)
chr4 (498-592)||(29232760-29232854)
chr4 (486-590)||(48602502-48602606)
chr4 (484-579)||(45983377-45983472)
chr4 (471-593)||(20986402-20986534)
chr4 (472-556)||(36106436-36106521)
chr4 (472-556)||(23120274-23120358)
chr4 (485-556)||(5122401-5122472)
chr4 (472-556)||(48338323-48338406)
chr4 (484-584)||(18396322-18396427)
chr4 (472-544)||(2939909-2939981)
chr4 (484-556)||(15723875-15723947)
chr4 (500-556)||(19753538-19753594)
chr4 (500-556)||(19786212-19786268)
chr4 (472-553)||(1566115-1566196)
chr4 (471-539)||(4642402-4642470)
chr4 (472-556)||(21069027-21069111)
chr4 (504-579)||(30193969-30194044)
chr4 (485-572)||(36077567-36077654)
chr4 (472-542)||(8484647-8484717)
chr4 (472-591)||(23625873-23626002)
chr4 (491-597)||(46471440-46471546)
chr4 (492-585)||(23937506-23937599)
chr4 (484-576)||(28147773-28147870)
chr4 (472-585)||(40806801-40806919)
chr4 (472-584)||(43630559-43630671)
chr4 (503-563)||(49640860-49640920)
chr4 (472-537)||(5262000-5262065)
chr4 (38-170)||(12607257-12607390)
chr4 (504-557)||(14866790-14866843)
chr4 (472-585)||(48996066-48996179)
chr4 (471-554)||(18536663-18536746)
chr4 (472-585)||(40900066-40900184)
chr4 (472-556)||(54274037-54274118)
chr4 (473-521)||(6333299-6333347)
chr4 (547-591)||(18319543-18319587)
chr4 (547-591)||(18399094-18399138)
chr4 (485-537)||(29636768-29636820)
chr4 (485-537)||(29644161-29644213)
chr4 (472-556)||(32223336-32223420)
chr4 (485-537)||(42557719-42557771)
chr4 (485-537)||(50570994-50571046)
[»] chr1 (48 HSPs)
chr1 (472-593)||(27507471-27507592)
chr1 (471-575)||(2490026-2490130)
chr1 (474-556)||(12973543-12973625)
chr1 (481-574)||(6694367-6694460)
chr1 (470-593)||(6248056-6248184)
chr1 (472-556)||(8165568-8165652)
chr1 (473-593)||(34914116-34914236)
chr1 (472-593)||(16537817-16537938)
chr1 (508-593)||(50952010-50952095)
chr1 (472-556)||(36203460-36203544)
chr1 (471-641)||(50471207-50471382)
chr1 (470-553)||(3935436-3935519)
chr1 (471-556)||(21685559-21685644)
chr1 (472-556)||(11074416-11074500)
chr1 (471-591)||(35980374-35980489)
chr1 (475-554)||(26345077-26345156)
chr1 (472-593)||(32910344-32910470)
chr1 (471-593)||(35980253-35980370)
chr1 (492-585)||(33474449-33474542)
chr1 (484-593)||(52828816-52828924)
chr1 (484-556)||(50153402-50153474)
chr1 (512-579)||(10847521-10847588)
chr1 (472-556)||(25560017-25560097)
chr1 (471-552)||(17989028-17989108)
chr1 (492-592)||(9330388-9330488)
chr1 (472-556)||(40095438-40095522)
chr1 (494-549)||(27350662-27350717)
chr1 (471-554)||(52380741-52380824)
chr1 (471-548)||(21905207-21905284)
chr1 (471-556)||(33769858-33769943)
chr1 (473-585)||(1161730-1161842)
chr1 (484-556)||(16062856-16062928)
chr1 (483-554)||(35375168-35375239)
chr1 (470-556)||(9962164-9962250)
chr1 (495-549)||(17651756-17651810)
chr1 (483-540)||(44055705-44055762)
chr1 (472-585)||(51252403-51252516)
chr1 (472-556)||(18309981-18310065)
chr1 (613-648)||(6694293-6694328)
chr1 (613-648)||(26344973-26345008)
chr1 (471-532)||(8268637-8268699)
chr1 (472-554)||(50310587-50310669)
chr1 (472-537)||(16529536-16529601)
chr1 (492-565)||(27770200-27770272)
chr1 (492-537)||(32954039-32954084)
chr1 (485-537)||(8211273-8211325)
chr1 (512-556)||(24629964-24630008)
chr1 (473-537)||(39256672-39256736)
[»] chr5 (41 HSPs)
chr5 (472-584)||(36567703-36567815)
chr5 (472-556)||(27572062-27572146)
chr5 (470-595)||(2588954-2589079)
chr5 (471-556)||(35240841-35240926)
chr5 (472-572)||(40884312-40884412)
chr5 (513-594)||(36760136-36760217)
chr5 (500-556)||(17132107-17132163)
chr5 (508-591)||(2422824-2422907)
chr5 (519-592)||(2797117-2797190)
chr5 (471-556)||(25495065-25495150)
chr5 (500-553)||(32244396-32244449)
chr5 (508-565)||(40331498-40331555)
chr5 (472-591)||(20191956-20192080)
chr5 (485-585)||(42544653-42544753)
chr5 (490-556)||(41454858-41454929)
chr5 (519-592)||(2803279-2803352)
chr5 (471-526)||(10090286-10090341)
chr5 (485-572)||(27886417-27886504)
chr5 (491-556)||(14652453-14652518)
chr5 (488-556)||(28224881-28224949)
chr5 (519-648)||(691478-691608)
chr5 (485-572)||(30002006-30002093)
chr5 (474-556)||(22747590-22747672)
chr5 (489-543)||(40692494-40692547)
chr5 (507-572)||(667615-667680)
chr5 (491-556)||(1048730-1048795)
chr5 (484-556)||(34087413-34087486)
chr5 (472-537)||(36177141-36177206)
chr5 (512-556)||(6633341-6633385)
chr5 (485-537)||(8408985-8409037)
chr5 (504-556)||(11402604-11402656)
chr5 (492-572)||(12166165-12166245)
chr5 (504-579)||(10174099-10174174)
chr5 (510-556)||(6594997-6595043)
chr5 (87-169)||(16842494-16842576)
chr5 (472-589)||(17085221-17085338)
chr5 (485-537)||(11917400-11917452)
chr5 (512-572)||(12681070-12681130)
chr5 (547-595)||(18845573-18845620)
chr5 (485-537)||(30265827-30265879)
chr5 (485-537)||(33792655-33792706)
[»] chr2 (22 HSPs)
chr2 (470-593)||(41461061-41461189)
chr2 (474-585)||(44085472-44085584)
chr2 (471-592)||(12041571-12041691)
chr2 (481-593)||(1331000-1331112)
chr2 (488-556)||(5862648-5862716)
chr2 (471-593)||(17762722-17762849)
chr2 (472-577)||(44979765-44979870)
chr2 (472-556)||(27301501-27301585)
chr2 (472-556)||(28790487-28790571)
chr2 (508-647)||(11678014-11678154)
chr2 (508-647)||(11695492-11695632)
chr2 (484-592)||(13193892-13194005)
chr2 (472-593)||(12884512-12884626)
chr2 (504-572)||(9811404-9811472)
chr2 (472-571)||(11375883-11375982)
chr2 (544-594)||(36500611-36500661)
chr2 (495-593)||(15320559-15320657)
chr2 (494-556)||(30759665-30759727)
chr2 (472-537)||(44035287-44035353)
chr2 (515-556)||(21480829-21480870)
chr2 (472-556)||(36075381-36075465)
chr2 (485-537)||(36413676-36413728)
[»] chr8 (33 HSPs)
chr8 (472-579)||(7428427-7428534)
chr8 (508-579)||(12660250-12660321)
chr8 (472-589)||(10661135-10661252)
chr8 (471-556)||(24682108-24682192)
chr8 (504-592)||(40436450-40436543)
chr8 (472-556)||(44336753-44336838)
chr8 (471-541)||(11218930-11219000)
chr8 (471-552)||(22811194-22811275)
chr8 (471-597)||(33565935-33566073)
chr8 (500-556)||(36340777-36340833)
chr8 (472-556)||(4785217-4785301)
chr8 (517-592)||(12193439-12193514)
chr8 (517-592)||(12437867-12437942)
chr8 (471-570)||(28073194-28073293)
chr8 (508-556)||(31497616-31497664)
chr8 (471-592)||(9012813-9012934)
chr8 (472-526)||(12883777-12883831)
chr8 (472-537)||(33068247-33068312)
chr8 (508-556)||(6591245-6591293)
chr8 (472-572)||(44672770-44672870)
chr8 (484-556)||(45366301-45366373)
chr8 (472-527)||(8036024-8036079)
chr8 (508-556)||(6616940-6616988)
chr8 (472-556)||(15272323-15272407)
chr8 (472-556)||(15452692-15452776)
chr8 (472-584)||(36910321-36910432)
chr8 (513-556)||(19539400-19539443)
chr8 (614-648)||(4785364-4785398)
chr8 (472-537)||(14549205-14549270)
chr8 (485-537)||(30254162-30254219)
chr8 (472-521)||(30392120-30392169)
chr8 (485-537)||(3006608-3006660)
chr8 (485-537)||(5803282-5803334)
[»] scaffold0015 (1 HSPs)
scaffold0015 (484-556)||(62393-62465)
[»] scaffold0204 (2 HSPs)
scaffold0204 (472-556)||(25845-25928)
scaffold0204 (472-556)||(14504-14588)
[»] scaffold0308 (1 HSPs)
scaffold0308 (485-572)||(5884-5971)
[»] scaffold0013 (2 HSPs)
scaffold0013 (473-538)||(106012-106077)
scaffold0013 (472-537)||(128618-128683)
[»] scaffold0059 (1 HSPs)
scaffold0059 (472-537)||(69576-69641)
[»] scaffold0470 (1 HSPs)
scaffold0470 (508-556)||(6258-6306)
[»] scaffold0688 (2 HSPs)
scaffold0688 (471-528)||(1139-1195)
scaffold0688 (471-528)||(7708-7764)


Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 52)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 16 - 649
Target Start/End: Original strand, 20334109 - 20334742
Alignment:
Q  16 atcccttgagtcctctcaaatgggcattgatcaaggtttgatcatataagtctacgaaccaaaactattatagtgtatttcctttcttggcataaatgtc 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  20334109 atcccttgagtcccctcaaatgggcattgatcaaggtttgatcatataagtctacaaaccaaaactattatagtgtatttcctttcttggcatagatgtc 20334208  T
Q  116 tctcgatgtatgtgacattgcaccgacctgggttactaaatatcttgcgttcttcctttccgaacatcttataggacatatgtccactgcgtggcacaat 215  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  20334209 tctcaatgtatgtgacattgcaccgaactgggttactaaatatcttgcgttcttcctttccgaacatcttataggacatatgtccactgcatggcataat 20334308  T
Q  216 ttcattaaggaagatcataatttcaagttatgagcacataagaatgggatactaaagacctaaattaatatgagaatgggaagggaaattcataaaacaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20334309 ttcattaaggaagatcataatttcaagttatgagcacataagaatgggatactaaagacctaaattaatatgagaatgggaagggaaattcataaaacaa 20334408  T
Q  316 cagattgaatgctgataaaatcatagtccaagatgttatataacttgtaaagnnnnnnncctacaatttttatcatnnnnnnntctaatttgattttatt 415  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||||||||       | |||||||||||||||       |||||||||||||||||    
T  20334409 cagattgaatgctgacaaaatcatagtcgaagatgttctataacttgtaaagaaaaaaacttacaatttttatcataaaaaaatctaatttgattttatt 20334508  T
Q  416 ttacaaatacaaaaatacataatgaaatatttaaatagcattcatgtgcccattactaaaagtcgtccgaaccgcaagataaataagtatgcggtttggt 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20334509 ttacaaatacaaaaatacataatgaaatatttaaatagcattcatgtgcccattactaaaagtcgtccgaaccgcaagataaataaatatgcggtttggt 20334608  T
Q  516 ttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgattttttttagaagataannnnnnnnngtt 615  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||         |||    
T  20334609 ttggttcggttgactttaaaaataaaatctgaaccaaaccattgctgtttggattggatcggttagtgcgattttttttagaagataatttttttttgtt 20334708  T
Q  616 tccaacattaaaatcaaattgaaaagttaaaacc 649  Q
    ||||||||||||||||||||||||||||||||||    
T  20334709 tccaacattaaaatcaaattgaaaagttaaaacc 20334742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 481 - 585
Target Start/End: Complemental strand, 8118372 - 8118268
Alignment:
Q  481 tccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggtta 580  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||  |||||| ||||||||||||    
T  8118372 tccgaaccgcaagataaaaaagcatgtggtttggtttggttcggttgattttaaaaataaaatctgaaccaaaccaatgttgtttgggttggatcggtta 8118273  T
Q  581 gtgcg 585  Q
    |||||    
T  8118272 gtgcg 8118268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 472 - 593
Target Start/End: Complemental strand, 8568655 - 8568524
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaac----------caaaccattgcg 561  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||          ||||| | ||||    
T  8568655 taaaagtcatccgaaccgcaagataaataagtatgcggtttggttcggttcggttgacttttaaaataaaatccgaactaaatgaaatcaaactaatgcg 8568556  T
Q  562 gtttggattggatcggttagtgcgattttttt 593  Q
    |||||||||||||||||| ||||| |||||||    
T  8568555 gtttggattggatcggttggtgcggttttttt 8568524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 471 - 552
Target Start/End: Complemental strand, 31287881 - 31287800
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaa 552  Q
    |||| |||| || |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  31287881 ctaatagtcatctgaaccgtaagataaataagtatgcggtttggtttggttcggttgacttttaaaataagatccgaaccaa 31287800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 471 - 584
Target Start/End: Complemental strand, 524968 - 524855
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggatt 570  Q
    ||||||||  || ||||||||||||||| || |||||||||||||||| |||| |||||||| |||||||||||| |||||||||| | || ||||| ||    
T  524968 ctaaaagttatctgaaccgcaagataaaaaaatatgcggtttggtttgattcgattgacttttaaaataaaatccaaaccaaaccaattcgatttgggtt 524869  T
Q  571 ggatcggttagtgc 584  Q
    |||| |||| ||||    
T  524868 ggataggttggtgc 524855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 473 - 585
Target Start/End: Complemental strand, 27054832 - 27054720
Alignment:
Q  473 aaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    ||||||| ||| |||||| ||||||| ||| ||||||||||||||||||||||||| ||| ||||    |||| |||||||||| |||||||||||||||    
T  27054832 aaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagccatccaaaccaaaccaatgcggtttggattgg 27054733  T
Q  573 atcggttagtgcg 585  Q
     |||||| |||||    
T  27054732 ttcggtttgtgcg 27054720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 32942180 - 32942096
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||||||| |||||||||| ||  ||||||||||||||| ||||||||||||| |||||| ||||||||||||||||    
T  32942180 taaaagtcatccgaactgcaagataaaaaaacatgcggtttggtttgattcggttgacttttaaaatacaatccgaaccaaacca 32942096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 481 - 592
Target Start/End: Original strand, 29628098 - 29628209
Alignment:
Q  481 tccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggtta 580  Q
    ||||||||||||| |||| ||  |||||||||| |||||||||| ||| ||| ||||||||||  ||| ||||||| || ||||||| |||||||||||     
T  29628098 tccgaaccgcaaggtaaaaaaacatgcggtttgatttggttcggctgaattttaaaataaaatttgaatcaaaccaatgtggtttgggttggatcggttg 29628197  T
Q  581 gtgcgatttttt 592  Q
    ||||||||||||    
T  29628198 gtgcgatttttt 29628209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 471 - 556
Target Start/End: Original strand, 23032654 - 23032739
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| || |||||| |||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||  |||||||||||    
T  23032654 ctaaaagtcatctgaaccgaaagataaaaaagtatgtggtttagtttggttcggttgacttttaaaataaaatttgaaccaaacca 23032739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 471 - 556
Target Start/End: Original strand, 23729368 - 23729453
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||| || |||||||||||||||||| ||| ||||||||||||||   |||||||||||| ||||||||||| |||||||||||    
T  23729368 ctaaaaatcatccgaaccgcaagataaaaaagcatgcggtttggtttaactcggttgacttttaaaataaaatctgaaccaaacca 23729453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 500 - 556
Target Start/End: Complemental strand, 35820160 - 35820104
Alignment:
Q  500 aagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  35820160 aagtatgcggtttgatttggttcggttgacttttaaaataaaatccgaaccaaacca 35820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 484 - 556
Target Start/End: Original strand, 48642773 - 48642845
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||| || ||  ||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  48642773 gaaccgcaagattaaaaaacatgcggtttggtttggttcggttgactttaaaaattaaatttgaaccaaacca 48642845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 507 - 553
Target Start/End: Original strand, 40848867 - 40848913
Alignment:
Q  507 cggtttggtttggttcggttgactttaaaaataaaatccgaaccaaa 553  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  40848867 cggtttggtttggttcggttgacttttaaaataaaatccgaaccaaa 40848913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 556
Target Start/End: Complemental strand, 16535845 - 16535760
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| | | ||||||||| |||| ||  |||||||||  || ||||||||||||||| |||||||||||||||||||||||    
T  16535845 ctaaaagtcatgcaaaccgcaagttaaaaaaacatgcggtttcattaggttcggttgacttttaaaataaaatccgaaccaaacca 16535760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 556
Target Start/End: Original strand, 16629817 - 16629902
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| | | ||||||||| |||| ||  |||||||||  || ||||||||||||||| |||||||||||||||||||||||    
T  16629817 ctaaaagtcatgcaaaccgcaagttaaaaaaacatgcggtttcattaggttcggttgacttttaaaataaaatccgaaccaaacca 16629902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 508 - 585
Target Start/End: Complemental strand, 24361559 - 24361482
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcg 585  Q
    ||||||||||||||| ||||| |||||||| |  |||| |||||||||| ||||||||||||||| |||||| |||||    
T  24361559 ggtttggtttggttcagttgattttaaaaaaatcatccaaaccaaaccaatgcggtttggattggttcggtttgtgcg 24361482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 556
Target Start/End: Original strand, 34750968 - 34751053
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| | |||| ||||| ||| | |||||||||| ||||||||||| |||||| ||| ||||||||||||||| |||||||    
T  34750968 ctaaaagtcattcgaatcgcaatatataaaagtatgcgggttggtttggtttggttgatttttaaaataaaatccgaatcaaacca 34751053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 508 - 592
Target Start/End: Original strand, 37375341 - 37375430
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaacc-----aaaccattgcggtttggattggatcggttagtgcgatttttt 592  Q
    |||||||||||||| ||||||||||||||||| ||||||||||     |||||| |||||||||| ||| ||||||| ||||| ||||||    
T  37375341 ggtttggtttggtttggttgactttaaaaatagaatccgaaccaaactaaaccaatgcggtttgggttgaatcggttggtgcggtttttt 37375430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 593
Target Start/End: Original strand, 46147210 - 46147323
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaat-----ccgaaccaaaccattgcggtttggattggatcggtt 579  Q
    ||||| ||| |||| ||| |||||| ||||||||||| |||||||||| ||||||||||     || |||||||||| ||||||||   |||||||||||    
T  46147210 aaccgtaaggtaaaaaagcatgcggattggtttggtttggttgacttttaaaataaaatctgaaccaaaccaaaccaatgcggtttacgttggatcggtt 46147309  T
Q  580 agtgcgattttttt 593  Q
     |||||||||||||    
T  46147310 ggtgcgattttttt 46147323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 474 - 593
Target Start/End: Complemental strand, 10338910 - 10338786
Alignment:
Q  474 aaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaac-----cattgcggtttgga 568  Q
    |||||| ||| ||| |||| ||||||||||||  |||||  ||||||||| |||||||| ||||||||||| |||||||||     || | |||||||||    
T  10338910 aaagtcatccaaactgcaaaataaataagtatttggttttatttggttcgattgacttttaaaataaaatctgaaccaaaccaaatcaattcggtttgga 10338811  T
Q  569 ttggatcggttagtgcgattttttt 593  Q
    |||||||||||  |||| |||||||    
T  10338810 ttggatcggttgatgcggttttttt 10338786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 503 - 585
Target Start/End: Complemental strand, 24361358 - 24361276
Alignment:
Q  503 tatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcg 585  Q
    |||||||||||||||||||||||| | || ||||| |  |||| |||||||| | ||||||||||||||| |||||| |||||    
T  24361358 tatgcggtttggtttggttcggttaatttaaaaaaaatcatccaaaccaaactaatgcggtttggattggttcggtttgtgcg 24361276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 493 - 554
Target Start/End: Complemental strand, 4153807 - 4153746
Alignment:
Q  493 gataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaac 554  Q
    |||||| ||| ||||||| |||||||||||||||||||||||| |||||||  |||||||||    
T  4153807 gataaaaaagcatgcggtatggtttggttcggttgactttaaatataaaatttgaaccaaac 4153746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 508 - 593
Target Start/End: Complemental strand, 21237841 - 21237756
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgattttttt 593  Q
    ||||||||||| || | |||||||| ||||||||||| ||| ||||||| |||||||| | ||||| ||||| ||||| |||||||    
T  21237841 ggtttggtttgatttgattgacttttaaaataaaatctgaatcaaaccaatgcggtttcggttggaacggtttgtgcggttttttt 21237756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 32823586 - 32823698
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| || ||| ||||||| ||| ||||||||||||| ||||||||||| ||| ||||    |||| ||||||| || ||||||||||||||    
T  32823586 taaaagtcatccaaatcgcgagataaaaaagcatgcggtttggtt-ggttcggttgatttttaaaaagtcatccaaaccaaatcaatgcggtttggattg 32823684  T
Q  572 gatcggttagtgcg 585  Q
    | |||||| |||||    
T  32823685 gttcggtttgtgcg 32823698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 504 - 572
Target Start/End: Complemental strand, 11206427 - 11206359
Alignment:
Q  504 atgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    ||||||||||||||||||||||||| ||| ||||    |||| |||||||||| |||||||||||||||    
T  11206427 atgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 11206359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 539
Target Start/End: Complemental strand, 11834601 - 11834533
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaata 539  Q
    ||||||||  |||||||  |||||||||||||||||||||||||||||||||  |||| ||| ||||||    
T  11834601 ctaaaagttatccgaactacaagataaataagtatgcggtttggtttggttcaattgatttttaaaata 11834533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 472 - 579
Target Start/End: Original strand, 13852290 - 13852402
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaa-----ataaaatccgaaccaaaccattgcggtttg 566  Q
    |||||||| ||| ||| || ||||||| ||| ||||||||||||||||||||||||| ||| |||     ||  || || |||||||||| |||||||||    
T  13852290 taaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaaccaatgcggtttg 13852389  T
Q  567 gattggatcggtt 579  Q
    |||||| ||||||    
T  13852390 gattggttcggtt 13852402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 472 - 544
Target Start/End: Complemental strand, 26215225 - 26215153
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatc 544  Q
    |||||||| ||| |||||||||||||  ||| || ||| || ||||||||||||||||||| |||||||||||    
T  26215225 taaaagtcatccaaaccgcaagataataaagcatacgggtttgtttggttcggttgacttttaaaataaaatc 26215153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 543
Target Start/End: Original strand, 27456340 - 27456412
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaat 543  Q
    ||||||||| || |||||| | |||||| ||| |||||||||||||| |||| ||||||||| ||||||||||    
T  27456340 ctaaaagtcatctgaaccgtacgataaaaaagcatgcggtttggtttagttctgttgacttttaaaataaaat 27456412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 577
Target Start/End: Complemental strand, 7685988 - 7685914
Alignment:
Q  503 tatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcgg 577  Q
    |||| |||||| ||||||||  |||| ||| ||||||||||  ||||||||||| |||||||||| |||||||||    
T  7685988 tatgtggtttgatttggttcatttgatttttaaaataaaatttgaaccaaaccaatgcggtttgggttggatcgg 7685914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 483 - 597
Target Start/End: Original strand, 7697277 - 7697400
Alignment:
Q  483 cgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccg----------aaccaaaccattgcggtttggattgg 572  Q
    ||||| |||||||| | ||||||| |||| |||||||||| ||||| ||| |||||||||||||          |||||||||| ||||||||||||| |    
T  7697277 cgaactgcaagatacaaaagtatgtggtt-ggtttggttctgttgaattttaaaataaaatccggatcaaaccaaaccaaaccaatgcggtttggatttg 7697375  T
Q  573 atcggttagtgcgattttttttaga 597  Q
    ||||||| ||||  |||||||||||    
T  7697376 atcggttggtgcagttttttttaga 7697400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 542
Target Start/End: Complemental strand, 23707187 - 23707134
Alignment:
Q  489 gcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaa 542  Q
    |||||||||| ||||||||||||||||||| ||| ||||||| | |||||||||    
T  23707187 gcaagataaaaaagtatgcggtttggtttgattctgttgactcttaaaataaaa 23707134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 537
Target Start/End: Original strand, 47903229 - 47903294
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    ||||| || ||| |||||| ||||||| ||| ||||||||||||||||||||||||| ||| ||||    
T  47903229 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaa 47903294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 572
Target Start/End: Complemental strand, 7209370 - 7209270
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| |||| | ||||||| ||| || |||||||||||||||||||||| ||| ||||    |||| |||||||||| ||||  ||||||||    
T  7209370 taaaagtcatccaaaccacgagataaaaaagcatacggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcgtcttggattg 7209271  T
Q  572 g 572  Q
    |    
T  7209270 g 7209270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 568
Target Start/End: Original strand, 25007348 - 25007408
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttgga 568  Q
    ||||||||||| |||| || ||||| ||| |||||||| |||||||||| |||||||||||    
T  25007348 ggtttggtttgattcgattaacttttaaactaaaatccaaaccaaaccaatgcggtttgga 25007408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 556
Target Start/End: Original strand, 49011243 - 49011314
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||| |||||||||| || |||||||||  ||||| ||||||||||||| ||||| |||| ||||||||||||    
T  49011243 gaactgcaagataaaaaa-tatgcggttaagtttgattcggttgactttcaaaatgaaattcgaaccaaacca 49011314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 556
Target Start/End: Complemental strand, 6880198 - 6880123
Alignment:
Q  481 tccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||| |||||||||  ||  ||| |||||||| |||| || |||||||| |||||||||||| ||||||||||    
T  6880198 tccgaacggcaagataagcaaacatggggtttggtatggtacgattgacttttaaaataaaatccaaaccaaacca 6880123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 32237665 - 32237712
Alignment:
Q  508 ggtttggtttggttcggttgac-tttaaaaataaaatccgaaccaaac 554  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  32237665 ggtttggttcggttcggttgacttttaaaaataaaattcgaaccaaac 32237712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 556
Target Start/End: Original strand, 43202447 - 43202494
Alignment:
Q  509 gtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||||||||||||||| |||||| |||| ||| |||||||    
T  43202447 gtttggtttggttcggttgacttttaaaatacaatctgaatcaaacca 43202494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 556
Target Start/End: Original strand, 20306629 - 20306676
Alignment:
Q  505 tgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||||||||    ||||||| |||||||||||||||||||||||    
T  20306629 tgcggtttggtttggtt----tgacttttaaaataaaatccgaaccaaacca 20306676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 585
Target Start/End: Complemental strand, 26525010 - 26524924
Alignment:
Q  504 atgcggtttggtttggttcggttgactttaaaaataaaatc-----cgaaccaaaccattgcggtttggattggatcggttagtgcg 585  Q
    ||||||||||| ||||||||||| ||||| |||||||||||     | |||| ||||| ||||||| || ||||||||||| |||||    
T  26525010 atgcggtttgggttggttcggttaacttttaaaataaaatcataatcaaacctaaccaatgcggttagggttggatcggttggtgcg 26524924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 646
Target Start/End: Complemental strand, 31287725 - 31287692
Alignment:
Q  613 gtttccaacattaaaatcaaattgaaaagttaaa 646  Q
    ||||||||||||||||||||||| ||||||||||    
T  31287725 gtttccaacattaaaatcaaattaaaaagttaaa 31287692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 585
Target Start/End: Complemental strand, 31983097 - 31982984
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||  ||| |||||| ||||||| || ||||| |||||||||||||| ||||| ||| ||||    |||| ||||||||||  | || ||||||||    
T  31983097 taaaagttatccaaaccgcgagataaaaaaatatgcagtttggtttggttcagttgatttttaaaaagtcatccaaaccaaaccaacgtgggttggattg 31982998  T
Q  572 gatcggttagtgcg 585  Q
    | |||||| |||||    
T  31982997 gttcggttggtgcg 31982984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 537
Target Start/End: Original strand, 43429157 - 43429222
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||||| ||| |||||| ||||||| | | | ||||||||||||||||||||||| ||| ||||    
T  43429157 taaaagtcatccaaaccgcgagataaaaatgcacgcggtttggtttggttcggttgatttttaaaa 43429222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 556
Target Start/End: Complemental strand, 2308180 - 2308132
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||||||||||||| ||| ||||||||||  |||||| ||||    
T  2308180 ggtttggtttggttcggttgatttttaaaataaaatttgaaccacacca 2308132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 3213310 - 3213258
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  3213310 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 3213258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 8769051 - 8768999
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  8769051 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 8768999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 10671815 - 10671867
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  10671815 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 10671867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 556
Target Start/End: Original strand, 33434125 - 33434177
Alignment:
Q  504 atgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||||||||||  ||||| ||| ||||| |||| ||||||||||||    
T  33434125 atgcggtttggtttggttttgttgatttttaaaattaaattcgaaccaaacca 33434177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 544
Target Start/End: Original strand, 43908657 - 43908729
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatc 544  Q
    |||||||| | | ||||| | |||||| || || ||||| ||||||||| ||||||||||| |||||||||||    
T  43908657 taaaagtcattcaaaccgtatgataaaaaaatacgcggtctggtttggtccggttgacttttaaaataaaatc 43908729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 47069663 - 47069715
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  47069663 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 47069715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 47204545 - 47204493
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  47204545 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 47204493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 474 - 593
Target Start/End: Original strand, 9686041 - 9686160
Alignment:
Q  474 aaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgga 573  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  9686041 aaagtcatctgaaccgcaagataaataagtatgcggtttggtttggttcggttaacttttaaaataaaatccgaaccaaaccaatgcggtttggattgga 9686140  T
Q  574 tcggttagtgcgattttttt 593  Q
    || ||| |||| ||||||||    
T  9686141 tcagttggtgcaattttttt 9686160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 472 - 578
Target Start/End: Complemental strand, 24645053 - 24644948
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||||| ||| ||||||||||    
T  24645053 taaaagtcatccgaaccgcaagataaataagtatgcggtttggtttgattc-gttgacttttaaaataaaatccaaaccaaaccaatgcagtttggattg 24644955  T
Q  572 gatcggt 578  Q
    |||||||    
T  24644954 gatcggt 24644948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 481 - 592
Target Start/End: Complemental strand, 14940664 - 14940553
Alignment:
Q  481 tccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggtta 580  Q
    |||||||||||||||||| ||  |||| ||||||||||||||||||||||||  ||||||||||||||||||||||  ||||||||| |||||| ||||     
T  14940664 tccgaaccgcaagataaaaaaacatgcagtttggtttggttcggttgactttttaaataaaatccgaaccaaaccaacgcggtttgggttggattggttg 14940565  T
Q  581 gtgcgatttttt 592  Q
    ||||| ||||||    
T  14940564 gtgcggtttttt 14940553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 472 - 549
Target Start/End: Original strand, 22413819 - 22413896
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaac 549  Q
    |||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  22413819 taaaagtcatccgaaccagaagataaataagtatgcggtttggtttggttcggttgacttttaaaataaaatctgaac 22413896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 472 - 648
Target Start/End: Original strand, 29048108 - 29048282
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| ||||  ||| |||| | || |||| ||||||||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||     
T  29048108 taaaagtcatccaaaccataaggtaaaaaggtgtgcgatttggtttggttcggttgacttttaaaataaaatccgaactaaaccaatgcgatttggatta 29048207  T
Q  572 gatcggttagtgcgattttttttagaagataannnnnnnnngtttccaacattaaaatcaaattgaaaagttaaaac 648  Q
    ||| |||| |||||  ||||||||||  ||||         ||||||||||||||||||||||| ||||||||||||    
T  29048208 gattggttggtgcg-gtttttttagacaataa-atttttttgtttccaacattaaaatcaaattaaaaagttaaaac 29048282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 471 - 556
Target Start/End: Complemental strand, 892443 - 892358
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| |||||||||||| ||||| ||  ||||||||||||||||||||||| ||||| ||||||| |||||||| ||||||    
T  892443 ctaaaagtcatccgaaccgcaaaataaaaaaacatgcggtttggtttggttcggttaacttttaaaataacatccgaactaaacca 892358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 10590832 - 10590945
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| ||| || ||||||| ||| ||||||||||||||||||||||||| ||| ||||    |||| |||||||||| ||||| ||||||||    
T  10590832 taaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatcccaaccaaaccaatgcggcttggattg 10590931  T
Q  572 gatcggttagtgcg 585  Q
    | |||||| |||||    
T  10590932 gttcggtttgtgcg 10590945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 471 - 592
Target Start/End: Original strand, 8064474 - 8064596
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagta--tgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttgga 568  Q
    |||||| || |||||||||||||||||| ||  |  || |||||||||||||| | |||||||| |||||||||| |||||||||||  ||||||||||     
T  8064474 ctaaaaatcatccgaaccgcaagataaaaaaaaacatgtggtttggtttggtttgattgacttttaaaataaaat-cgaaccaaaccgatgcggtttggg 8064572  T
Q  569 ttggatcggttagtgcgatttttt 592  Q
    ||| ||||||| ||||| ||||||    
T  8064573 ttgaatcggttggtgcggtttttt 8064596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 472 - 595
Target Start/End: Complemental strand, 31945525 - 31945402
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatc-----cgaaccaaaccattgcggtttg 566  Q
    |||||||| ||||||||| |||||||| ||||||||| |||||||     ||||||||||| |||||||||||     | |||||| ||| |||||||||    
T  31945525 taaaagtcatccgaaccgtaagataaaaaagtatgcgttttggtt-----cggttgacttttaaaataaaatcaaaatcaaaccaatccaatgcggtttg 31945431  T
Q  567 gattggatcggttagtgcgatttttttta 595  Q
    ||||||||||| | ||||| |||||||||    
T  31945430 gattggatcgggttgtgcggtttttttta 31945402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 473 - 532
Target Start/End: Original strand, 30752513 - 30752572
Alignment:
Q  473 aaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgacttt 532  Q
    ||||||| || ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  30752513 aaaagtcatctgaaccgcaagataaaaaagcatgcggtttggtttggttcggttgacttt 30752572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 503 - 556
Target Start/End: Complemental strand, 19135182 - 19135129
Alignment:
Q  503 tatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  19135182 tatgcggtttggtttggttcggttgacttttaaaataaaatatgaaccaaacca 19135129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 556
Target Start/End: Complemental strand, 7170174 - 7170114
Alignment:
Q  496 aaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||| | ||||||||||    
T  7170174 aaataagtatgcggtttggattggatcggttgacttttaaaataaaattcaaaccaaacca 7170114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 12270551 - 12270638
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    |||| |||||||||| |||||||||||||||    
T  12270551 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 12270638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 572
Target Start/End: Original strand, 6266889 - 6266985
Alignment:
Q  476 agtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    |||| ||||||||| || ||||| ||  ||||||||||||||||| ||||||||||| ||||| ||| || |||||||| | || | ||||||||||    
T  6266889 agtcatccgaaccgtaaaataaaaaaacatgcggtttggtttggtacggttgacttttaaaatgaaaaccaaaccaaacaaatgtgttttggattgg 6266985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 472 - 585
Target Start/End: Complemental strand, 35040311 - 35040203
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| |||||| ||||||| ||| |||||||||||||||||| |||||| ||| ||   ||| ||  | |||||||| ||||||||||||||    
T  35040311 taaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggtttggttgatttttaa---aaagtc--atccaaaccaatgcggtttggattg 35040217  T
Q  572 gatcggttagtgcg 585  Q
    | |||||| |||||    
T  35040216 gttcggtttgtgcg 35040203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 585
Target Start/End: Complemental strand, 5288002 - 5287892
Alignment:
Q  475 aagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggat 574  Q
    ||||| ||| ||| || ||||||||||  |||| |||||||||||||||||||| ||| ||||    |||| ||| |||||| | ||| ||||||||| |    
T  5288002 aagtcatccaaactgcgagataaataaacatgcagtttggtttggttcggttgatttttaaaaagtcatccaaacgaaaccaatacggcttggattggtt 5287903  T
Q  575 cggttagtgcg 585  Q
    |||||||||||    
T  5287902 cggttagtgcg 5287892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 556
Target Start/End: Original strand, 11417035 - 11417121
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagat-aaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||| || ||||||||| ||| | ||| |||||||| ||||| ||||||| | |||||||| |||||||||||| ||||||||||    
T  11417035 ctaaaattcatccgaaccgtaagctgaaaaaagtatgctgtttgatttggtttgattgacttttaaaataaaatccaaaccaaacca 11417121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 556
Target Start/End: Complemental strand, 29129058 - 29128973
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| |  ||||||||| ||||| ||| |||  ||||| |||| ||| ||||| ||| |||||||||||||||||||||||    
T  29129058 ctaaaagtcatatgaaccgcaatataaaaaagcatgtagtttgatttgattccgttgatttttaaaataaaatccgaaccaaacca 29128973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 562
Target Start/End: Original strand, 9909047 - 9909139
Alignment:
Q  470 actaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcgg 562  Q
    |||||||||  |||||||||||||||| | ||| ||| | | || ||||||||||||| |||| ||||| |||  |||||||||||| |||||    
T  9909047 actaaaagttatccgaaccgcaagatagaaaagcatgtgatatgttttggttcggttggcttttaaaatgaaagtcgaaccaaaccaatgcgg 9909139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 523
Target Start/End: Complemental strand, 26645485 - 26645434
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcg 523  Q
    |||||||| ||||||||| ||| |||| || |||||||||||||||||||||    
T  26645485 taaaagtcatccgaaccgtaaggtaaaaaaatatgcggtttggtttggttcg 26645434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 523
Target Start/End: Complemental strand, 26751451 - 26751400
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcg 523  Q
    |||||||| ||||||||| ||| |||| || |||||||||||||||||||||    
T  26751451 taaaagtcatccgaaccgtaaggtaaaaaaatatgcggtttggtttggttcg 26751400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 555
Target Start/End: Original strand, 28632929 - 28632999
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacc 555  Q
    ||||| |||||||| ||  ||||| ||| ||||||||||||||||||| ||||||| ||  ||||||||||    
T  28632929 aaccgtaagataaaaaaacatgcgattttgtttggttcggttgacttttaaaataatatttgaaccaaacc 28632999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 6441849 - 6441792
Alignment:
Q  47 caaggtttgatcatataagtctacgaaccaaaactattatagtgtatttcctttcttg 104  Q
    |||| |||| ||| ||||| || ||||||||||| ||||||||| |||||||||||||    
T  6441849 caagatttgttcacataagactccgaaccaaaacaattatagtggatttcctttcttg 6441792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 537
Target Start/End: Complemental strand, 10494482 - 10494417
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||||| ||| |||||| ||||||| ||| ||| |||||| |||||||||||||| ||| ||||    
T  10494482 taaaagtcatccaaaccgcgagataaaaaagcatggggtttgatttggttcggttgatttttaaaa 10494417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 556
Target Start/End: Complemental strand, 32190772 - 32190687
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| || |||||| | |||||| ||  ||| ||||||||||| || |||| ||||| |||||||||||| ||| ||||||    
T  32190772 ctaaaagtcatctgaaccgtatgataaaaaaacatgaggtttggtttgatttggttaacttttaaaataaaatccaaactaaacca 32190687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 5874240 - 5874188
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  5874240 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 5874188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 537
Target Start/End: Complemental strand, 13810969 - 13810905
Alignment:
Q  473 aaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    ||||||| ||| |||||| ||||||| ||| || |||||||||||||||| ||||| ||| ||||    
T  13810969 aaaagtcatccaaaccgcgagataaaaaagcatacggtttggtttggttcagttgatttttaaaa 13810905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 528
Target Start/End: Original strand, 15859707 - 15859763
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttga 528  Q
    |||||||| ||| |||||| |||| || ||| ||||||||||||||| |||||||||    
T  15859707 taaaagtcttccaaaccgcgagattaaaaagcatgcggtttggtttgattcggttga 15859763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 471 - 593
Target Start/End: Complemental strand, 55467744 - 55467617
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaac-----caaaccattgcggttt 565  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     ||||||| ||||||||    
T  55467744 ctaaaagtcatccgaactgcaagataaataagtatgcggtttggtttggttcggttgacttttaaaataaaatccgaaccaaatcaaaccaatgcggttt 55467645  T
Q  566 ggattggatcggttagtgcgattttttt 593  Q
    |||||||||| ||| ||||| |||||||    
T  55467644 ggattggatcagttggtgcggttttttt 55467617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 472 - 592
Target Start/End: Complemental strand, 38652089 - 38651970
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |||||||| | |||||||||| |||    
T  38652089 taaaagtcatccgaatcgcaagataaaaaa-tatgcggtttggtttggttcggttgactttaaaaataatatccaaaccaaactaatgcggtttgggttg 38651991  T
Q  572 gatcggttagtgcgatttttt 592  Q
    ||||||||  |||| ||||||    
T  38651990 gatcggttgatgcggtttttt 38651970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 54122002 - 54122086
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  54122002 taaaagtcatccgaaccgtaagataaaaaagtatgcggtttggtttggttcggttgacttttaaaataaaatccgaaccaaacca 54122086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 26758205 - 26758289
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || || ||||||||    
T  26758205 taaaagtcatccgaaccgcaagataaataagtatacggtttggtttggttcggttgacttttaaaataaagtctgatccaaacca 26758289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 485 - 593
Target Start/End: Complemental strand, 45915291 - 45915184
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgc 584  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||  ||| || ||||| |||| ||||||||| |||||||||||| ||||    
T  45915291 aaccgcaagatgaataagtatgcggtttggtttggttcggttgacttttaaaaccaaa-ccaaaccagaccaatgcggtttgaattggatcggttggtgc 45915193  T
Q  585 gattttttt 593  Q
    | |||||||    
T  45915192 ggttttttt 45915184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 470 - 556
Target Start/End: Complemental strand, 22257602 - 22257516
Alignment:
Q  470 actaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||| |||||||||| |||||||||||||||||||||| ||| |||| ||||||||| ||||||| |||||||||||||||    
T  22257602 actaaaagtcatccgaaccgcgagataaataagtatgcggtttgatttagttcagttgacttttaaaataatatccgaaccaaacca 22257516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 484 - 556
Target Start/End: Complemental strand, 42363314 - 42363242
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42363314 gaaccgcaagataaaaaatcatgcggtttggtttggttcggttgactttaaaaacaaaatccgaaccaaacca 42363242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 471 - 556
Target Start/End: Complemental strand, 17144831 - 17144747
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||    
T  17144831 ctaaaagtcatccaaaccgcaagataaa-aagtatgcggattggtttggttcggttgacttttaaaatagaatccgaagcaaacca 17144747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 553
Target Start/End: Original strand, 45629174 - 45629255
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaa 553  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||| || |||||||||| |||||||| |||||||||||    
T  45629174 taaaagtcatccgaaccgcaagataaataagtatgcaatttggtttgatttggttgacttttaaaataaactccgaaccaaa 45629255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 472 - 585
Target Start/End: Complemental strand, 6004488 - 6004375
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| |||||| ||||||| ||| ||||||||||||||||||||||||| ||| ||||    |||| |||||||||| ||||||||||||||    
T  6004488 taaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattg 6004389  T
Q  572 gatcggttagtgcg 585  Q
      |||||| |||||    
T  6004388 attcggtttgtgcg 6004375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 8558059 - 8557975
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||  |||||| |||||||||| |||  |||||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  8558059 taaaagtcacccgaactgcaagataaaaaagcttgcggtttggttcggtttgattgactttaaaaataaaatccgaaccaaacca 8557975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 472 - 592
Target Start/End: Original strand, 20846451 - 20846582
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagta--tgcggtttggtttggttcggttgactttaaaaataaaatccgaac---------caaaccattgc 560  Q
    |||||||| |||||||||||||||||| || ||  |||| ||||||||||||||||||||||| |||||||||||| |||         ||||||| |||    
T  20846451 taaaagtcatccgaaccgcaagataaaaaaatacatgcgctttggtttggttcggttgacttttaaaataaaatccaaaccaaccaaatcaaaccaatgc 20846550  T
Q  561 ggtttggattggatcggttagtgcgatttttt 592  Q
    ||||||| ||||||||||| ||||| ||||||    
T  20846551 ggtttgggttggatcggttggtgcggtttttt 20846582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 504 - 556
Target Start/End: Original strand, 44650977 - 44651029
Alignment:
Q  504 atgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44650977 atgcggtttggtttggtttggttgactttaaaaataaaatccgaaccaaacca 44651029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 486 - 586
Target Start/End: Complemental strand, 50579089 - 50578985
Alignment:
Q  486 accgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccg----aaccaaaccattgcggtttggattggatcggttag 581  Q
    ||||||||||||| ||| | ||| ||||||||| |||||||||||||||||||||||||||    |||||||||| || ||||||| |||||| |||| |    
T  50579089 accgcaagataaaaaagcacgcgatttggtttgcttcggttgactttaaaaataaaatccgaacaaaccaaaccaatgtggtttgggttggattggttgg 50578990  T
Q  582 tgcga 586  Q
    |||||    
T  50578989 tgcga 50578985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 471 - 556
Target Start/End: Complemental strand, 2832501 - 2832411
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggtt-----cggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| |||||||| ||||||||| ||| ||||||||||||||||||     ||||||||||| ||||||||||||||| |||||||    
T  2832501 ctaaaagtcatccgaaccacaagataaaaaagcatgcggtttggtttggtttggttcggttgacttttaaaataaaatccgaatcaaacca 2832411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 592
Target Start/End: Original strand, 52632054 - 52632140
Alignment:
Q  506 gcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgatttttt 592  Q
    ||||||||||||| ||||||| ||||| |||||| |||||||||||||||| ||| |||||| |||||| |||| ||||| ||||||    
T  52632054 gcggtttggtttgattcggttaacttttaaaatacaatccgaaccaaaccaatgcagtttgggttggattggttggtgcggtttttt 52632140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 484 - 593
Target Start/End: Complemental strand, 46253521 - 46253413
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtg 583  Q
    ||||||||| |||||||||||| || ||| |||||||||||||| |||| |||||||| ||| |||||||||| || |||||| |||| ||| ||| |||    
T  46253521 gaaccgcaaaataaataagtattcgattttgtttggttcggttggcttttaaaataaattccaaaccaaaccaatgtggtttgaattgaatcagttggtg 46253422  T
Q  584 cgattttttt 593  Q
    | ||||||||    
T  46253421 c-attttttt 46253413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 484 - 556
Target Start/End: Original strand, 51191698 - 51191770
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||||||| || |||||||||||||||||||||||||  ||| ||||| ||| |||||||||||||    
T  51191698 gaaccgcaagataaaaaaatatgcggtttggtttggttcggttggattttaaaatgaaaaccgaaccaaacca 51191770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 508 - 583
Target Start/End: Original strand, 55129746 - 55129821
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtg 583  Q
    ||||||||||||||||||||||||| |||||| || |||||||||| || ||| |||| | |||||||||||||||    
T  55129746 ggtttggtttggttcggttgactttgaaaatacaaaccgaaccaaatcaatgcagtttaggttggatcggttagtg 55129821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 594
Target Start/End: Original strand, 27054073 - 27054183
Alignment:
Q  489 gcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaat-----ccgaaccaaaccattgcggtttggattggatcggttagtg 583  Q
    |||||||||||||||||||  |||||||||||| |||||| ||| ||||||||||     || |||||||||| |||| ||||||||||||||| ||| |    
T  27054073 gcaagataaataagtatgcattttggtttggtttggttgaattttaaaataaaattcaaaccaaaccaaaccaatgcgatttggattggatcggctagag 27054172  T
Q  584 cgatttttttt 594  Q
    |  ||||||||    
T  27054173 cagtttttttt 27054183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 26292057 - 26291973
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||| || ||| |||||||||||||| || | ||||||||| |||||||||||||| ||| |||||| |||| |||||||||||    
T  26292057 taaaaatcatccaaaccgcaagataaaaaattgtgcggtttgctttggttcggttgatttttaaaatagaatctgaaccaaacca 26291973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 572
Target Start/End: Complemental strand, 51149745 - 51149658
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    |||| |||||||||| |||||||||||||||    
T  51149745 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtgatccaaaccaaaccaatgcggtttggattgg 51149658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 537
Target Start/End: Original strand, 43030398 - 43030463
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||||| | |||| ||||||||||| |||||||| |||||||||||||||||||| ||| ||||    
T  43030398 taaaagtcatgcgaatcgcaagataaaaaagtatgcagtttggtttggttcggttgatttttaaaa 43030463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 34794589 - 34794676
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    |||||| ||| ||| ||| ||||| ||||||||||||||||||| ||| ||||    |||| |||||||||| |||||||||||||||    
T  34794589 aaccgcgagagaaaaaagcatgcgatttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 34794676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 509 - 556
Target Start/End: Original strand, 37045328 - 37045374
Alignment:
Q  509 gtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  37045328 gtttggtttggttcggttggcttt-aaaataaaatccgaaccaaacca 37045374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 483 - 542
Target Start/End: Original strand, 40483915 - 40483974
Alignment:
Q  483 cgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaa 542  Q
    |||||| ||||||||| | | ||||||||||||||||||| ||||||||| |||||||||    
T  40483915 cgaaccacaagataaaaatgcatgcggtttggtttggttcagttgacttttaaaataaaa 40483974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 556
Target Start/End: Original strand, 4554705 - 4554751
Alignment:
Q  510 tttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  4554705 tttggtttggttcggttgactttaaaagtaacatccaaaccaaacca 4554751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 32880282 - 32880395
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| |||||| ||||||| ||| ||| |||||| |||||||||||||| ||| ||||    || | |||||||||| | ||||||| ||||    
T  32880282 taaaagtcctccaaaccgcgagataaaaaagcatgtggtttgatttggttcggttgatttttaaaaagtcatacaaaccaaaccaatacggtttgaattg 32880381  T
Q  572 gatcggttagtgcg 585  Q
    | |||||| |||||    
T  32880382 gttcggtttgtgcg 32880395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 556
Target Start/End: Original strand, 25465821 - 25465865
Alignment:
Q  512 tggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||| | |||||||| |||||||||||||||||||||||    
T  25465821 tggtttggtttgattgacttttaaaataaaatccgaaccaaacca 25465865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 572
Target Start/End: Complemental strand, 48032929 - 48032850
Alignment:
Q  492 agataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||| ||||    |||| |||||||||| |||||||||||||||    
T  48032929 agataaaaaagcatgcggtttggtt-ggttcggttgatttttaaaaattcatccaaaccaaaccaatgcggtttggattgg 48032850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 594
Target Start/End: Original strand, 4280296 - 4280383
Alignment:
Q  507 cggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgatttttttt 594  Q
    ||||||||||||| |||||||||||| |||||||||| | ||| ||||||  ||||| | | |||||||| ||  |||| ||||||||    
T  4280296 cggtttggtttggctcggttgacttttaaaataaaattcaaacaaaaccaacgcggtctaggttggatcgattgatgcgttttttttt 4280383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 556
Target Start/End: Complemental strand, 4669735 - 4669664
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    |||||||||||||||    
T  4669735 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccgaaccaaacca 4669664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 556
Target Start/End: Complemental strand, 10481709 - 10481662
Alignment:
Q  509 gtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||||||||||||||| ||||||||||  ||| |||||||    
T  10481709 gtttggtttggttcggttgacttttaaaataaaatttgaatcaaacca 10481662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 48167259 - 48167325
Alignment:
Q  489 gcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| |||||| |||  ||||||||| ||||||||||||| |||||||||| |||| |||||||    
T  48167259 gcaagatagataagtgtgcaatttggtttg-ttcggttgacttttaaaataaaattcgaatcaaacca 48167325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 585
Target Start/End: Complemental strand, 50562651 - 50562558
Alignment:
Q  492 agataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcg 585  Q
    ||||||| ||| ||| ||||||||||||||||||||| ||| ||||    |||| || ||||||| | ||| ||||||||| |||||| |||||    
T  50562651 agataaaaaagcatgtggtttggtttggttcggttgatttttaaaaattcatcccaatcaaaccaattcggcttggattggttcggtttgtgcg 50562558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 472 - 592
Target Start/End: Complemental strand, 48293506 - 48293386
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||||||||||||| |||| ||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| |||    
T  48293506 taaaagtcatccgaaccgcaaggtaaaaaagcatgcggtttggtttggttcggttgtcttttaaaataaaatccgaaccaaaccaatgcggtttgggttg 48293407  T
Q  572 gatcggttagtgcgatttttt 592  Q
    |||||||| ||| | ||||||    
T  48293406 gatcggttggtgaggtttttt 48293386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 472 - 593
Target Start/End: Complemental strand, 23450085 - 23449964
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||  ||||||||| ||||||||||||||    
T  23450085 taaaagtcatccgaactgcaagataaataagtatgcggtttggtttggttcggttaacttttaaaatataatccacaccaaaccaatgcggtttggattg 23449986  T
Q  572 gatcggttagtgcgattttttt 593  Q
    ||||| ||  |||| |||||||    
T  23449985 gatcgattgttgcggttttttt 23449964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 484 - 603
Target Start/End: Original strand, 41325089 - 41325203
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtg 583  Q
    ||||||| |||||||||||||||||||||| |||  |||||||||||||     ||||||||||||||||||| |||||||||||||||||||||| |||    
T  41325089 gaaccgcgagataaataagtatgcggtttgatttaattcggttgacttt-----taaaatccgaaccaaaccaatgcggtttggattggatcggttcgtg 41325183  T
Q  584 cgattttttttagaagataa 603  Q
    | |||||||||||| |||||    
T  41325184 caattttttttagacgataa 41325203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 498 - 592
Target Start/End: Original strand, 29232760 - 29232854
Alignment:
Q  498 ataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgatttttt 592  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||||||    
T  29232760 ataagtttgcggtttggtttagttcggttgacttttaaaataaaatccgaactaaaccaatgcgatttggattggatcggttggtgcgatttttt 29232854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 486 - 590
Target Start/End: Complemental strand, 48602606 - 48602502
Alignment:
Q  486 accgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcg 585  Q
    ||||||||||||| | || |||||||||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||| ||||||||||| |||||    
T  48602606 accgcaagataaaaatgtttgcggtttggtttggttcggttgactttgaaaatacaatcctaaccaaaccaatgcggtttgggttggatcggttggtgcg 48602507  T
Q  586 atttt 590  Q
     ||||    
T  48602506 gtttt 48602502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 484 - 579
Target Start/End: Original strand, 45983377 - 45983472
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggtt 579  Q
    ||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||| |||| |||||||| | |||||||||| |||||||||||    
T  45983377 gaaccgcaagataaaaaatcatgcggtttggtttgattcggttgactttaaaaataacatccaaaccaaactaatgcggtttgggttggatcggtt 45983472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 471 - 593
Target Start/End: Original strand, 20986402 - 20986534
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaat----------ccgaaccaaaccattgc 560  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||          || |||||||||| |||    
T  20986402 ctaaaagtcatccaaaccgcaagataaacaagtatgcggtttggtttggttcggttgacttataaaataaaatatgaaccaaaccaaaccaaaccaatgc 20986501  T
Q  561 ggtttggattggatcggttagtgcgattttttt 593  Q
    ||||||||||| ||||||| ||||| |||||||    
T  20986502 ggtttggattgaatcggtttgtgcggttttttt 20986534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 36106521 - 36106436
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggttt-ggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| |||||||||||||||||| ||  ||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  36106521 taaaagtcatccgaaccgcaagataaaaaaacatgcggttttggtttggttcggttgacttttaaaataaaatccgaaccaaacca 36106436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 23120358 - 23120274
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| |||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| || |||| ||||||||||    
T  23120358 taaaagtcatccgaaccgcaagataaaaaagcatgcggtttggtttggttcgattgactttaaaaaaaacatccaaaccaaacca 23120274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 485 - 556
Target Start/End: Complemental strand, 5122472 - 5122401
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||| ||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5122472 aaccacaagataaaaaagcatgcggtttgatttggttcggttgactttaaaaataaaatccgaaccaaacca 5122401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 48338323 - 48338406
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||||||||| |||||||| ||  |||| |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  48338323 taaaagtcatccgaaccgtaagataaaaaac-atgcagtttggtttggttcggttgacttttaaaataaaatccaaaccaaacca 48338406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 484 - 584
Target Start/End: Original strand, 18396322 - 18396427
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccg-----aaccaaaccattgcggtttggattggatcggt 578  Q
    ||||||||||||||| |  |||||||||||||||||||| ||||||||| || ||||||||||     |||||||||| || ||||||| ||||||||||    
T  18396322 gaaccgcaagataaaaagatatgcggtttggtttggttcagttgacttttaagataaaatccgaacaaaaccaaaccaatgtggtttgggttggatcggt 18396421  T
Q  579 tagtgc 584  Q
    | ||||    
T  18396422 tggtgc 18396427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 472 - 544
Target Start/End: Original strand, 2939909 - 2939981
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatc 544  Q
    |||||||||| |||||||||||||||| ||||||||| ||| ||||||||| ||||| |||| ||||||||||    
T  2939909 taaaagtcgttcgaaccgcaagataaaaaagtatgcgatttagtttggttcagttgattttagaaataaaatc 2939981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 484 - 556
Target Start/End: Original strand, 15723875 - 15723947
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||| || ||||| |||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||    
T  15723875 gaaccgtaatataaaaaagtatgcagtttagtttggttcggttgactttaaaaataacatccaaaccaaacca 15723947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 500 - 556
Target Start/End: Complemental strand, 19753594 - 19753538
Alignment:
Q  500 aagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||    
T  19753594 aagtatgcggtttgatttggttcggttgacttttaaaataaaattcgaaccaaacca 19753538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 500 - 556
Target Start/End: Original strand, 19786212 - 19786268
Alignment:
Q  500 aagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||    
T  19786212 aagtatgcggtttgatttggttcggttgacttttaaaataaaattcgaaccaaacca 19786268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 472 - 553
Target Start/End: Complemental strand, 1566196 - 1566115
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaa 553  Q
    |||||||| || |||||| |||||||||||||||||||||| ||||| ||||||| | ||| ||| ||||||||||| ||||    
T  1566196 taaaagtcatctgaaccgtaagataaataagtatgcggtttagtttgattcggttaatttttaaattaaaatccgaatcaaa 1566115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 471 - 539
Target Start/End: Original strand, 4642402 - 4642470
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaata 539  Q
    ||||||||  ||||||||||||||||||||||||||  ||||| ||||||||| |||||||| ||||||    
T  4642402 ctaaaagttatccgaaccgcaagataaataagtatgtagtttgatttggttcgattgacttttaaaata 4642470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 21069027 - 21069111
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| | ||||| |||| |||||||| ||||| |||||||| |||| |||||||||| ||||| |||| ||||||||||||    
T  21069027 taaaagtcattcgaactgcaaaataaataaatatgcagtttggttcggtttggttgacttttaaaattaaattcgaaccaaacca 21069111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 504 - 579
Target Start/End: Complemental strand, 30194044 - 30193969
Alignment:
Q  504 atgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggtt 579  Q
    ||||||||||||||||||||||||| ||| ||||    |||| |||||||||| ||||||||||||||| ||||||    
T  30194044 atgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcggtt 30193969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 36077567 - 36077654
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    |||||| ||| ||| ||||||||||||||||||||||||||||| ||| ||||    |||| |||||||||| | |||||||||||||    
T  36077567 aaccgcgagagaaaaaagtatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatacggtttggattgg 36077654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 542
Target Start/End: Original strand, 8484647 - 8484717
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaa 542  Q
    |||||||| | | ||||||||||||||||| |||||||||||  ||| ||||||||||||| |||||||||    
T  8484647 taaaagtctttccaaccgcaagataaataactatgcggtttgtgttgattcggttgacttttaaaataaaa 8484717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 591
Target Start/End: Complemental strand, 23626002 - 23625873
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaat----------ccgaaccaaaccattgcg 561  Q
    |||||||| ||| || | ||| ||||| ||||||||||||| |||||||||| |||||||| ||||||||||          || ||||||| || ||||    
T  23626002 taaaagtcatccaaatcacaaaataaaaaagtatgcggttttgtttggttcgcttgacttttaaaataaaatctgaatcaacccaaaccaaatcaatgcg 23625903  T
Q  562 gtttggattggatcggttagtgcgattttt 591  Q
    |||||||||||||||||| ||||| |||||    
T  23625902 gtttggattggatcggttggtgcggttttt 23625873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 597
Target Start/End: Original strand, 46471440 - 46471546
Alignment:
Q  491 aagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgatttt 590  Q
    |||||||| || ||| |||||| ||||| ||||||||||||| |||||||||| | ||| ||| || |||||||||  || ||||||||| |||| ||||    
T  46471440 aagataaaaaaatatacggtttagtttgattcggttgacttttaaaataaaattcaaactaaatcagtgcggtttgagttagatcggttaatgcggtttt 46471539  T
Q  591 ttttaga 597  Q
    || ||||    
T  46471540 ttctaga 46471546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 492 - 585
Target Start/End: Complemental strand, 23937599 - 23937506
Alignment:
Q  492 agataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcg 585  Q
    ||||||| || |||||||||||||||||||||||||| ||| ||||    |||| |||||||||| ||| | ||||||||| |||||| |||||    
T  23937599 agataaaaaaatatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcagcttggattggttcggtttgtgcg 23937506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 576
Target Start/End: Original strand, 28147773 - 28147870
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaa-----atccgaaccaaaccattgcggtttggattggatcg 576  Q
    |||||| |||||||||||||| |||||||||||| |||  ||||||||| |||||| |     |||| |||||||||| ||||||||||||| |||||    
T  28147773 gaaccgtaagataaataagtaggcggtttggtttagttttgttgacttttaaaatataatctgatccaaaccaaaccaatgcggtttggatttgatcg 28147870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 585
Target Start/End: Complemental strand, 40806919 - 40806801
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgacttt--aaaaataa---aatccgaaccaaaccattgcggtttg 566  Q
    |||||||| ||| |||||| ||||||| ||| ||||| ||||||||||||||||||| |||  |||||| |   || || |||||||||| ||| |||||    
T  40806919 taaaagtcatccaaaccgcgagataaaaaagcatgcgatttggtttggttcggttgatttttaaaaaatcatccaaaccaaaccaaaccaatgcagtttg 40806820  T
Q  567 gattggatcggttagtgcg 585  Q
    |||||| |||||| |||||    
T  40806819 gattggttcggtttgtgcg 40806801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 472 - 584
Target Start/End: Original strand, 43630559 - 43630671
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| |||||  ||||||| || ||||||||||||||||||| |||||| ||| ||||    |||| || ||||||| ||||| ||||||||    
T  43630559 taaaagtcatccaaaccgtgagataaaaaaatatgcggtttggtttggtttggttgatttttaaaaagtcatccaaatcaaaccaatgcggcttggattg 43630658  T
Q  572 gatcggttagtgc 584  Q
    | |||||| ||||    
T  43630659 gttcggtttgtgc 43630671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 563
Target Start/End: Original strand, 49640860 - 49640920
Alignment:
Q  503 tatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggt 563  Q
    ||||||||||| |||| || |||||||||| |||||||||| |||||||||||| ||||||    
T  49640860 tatgcggtttgatttgatttggttgacttttaaaataaaattcgaaccaaaccaatgcggt 49640920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 537
Target Start/End: Complemental strand, 5262065 - 5262000
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||||| ||| |||||||||||||| ||| |||||||||||||| |||| ||||| ||| ||||    
T  5262065 taaaagtcatccaaaccgcaagataaaaaagcatgcggtttggtttagttcagttgatttttaaaa 5262000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 12607390 - 12607257
Alignment:
Q  38 ggcattgatcaaggtttgatcatataagtctacgaaccaaaactatt-atagtgtatttcctttcttggcataaatgtctctcgatgtatgtgacattgc 136  Q
    |||| ||| ||||||||| ||| ||||| ||| |||| || |||||| | | || |||||||||||||||||  ||| |||  |||||| ||||| ||||    
T  12607390 ggcactgaacaaggtttgttcacataagactaggaactaatactatttagaatggatttcctttcttggcatggatgcctccagatgtaggtgacgttgc 12607291  T
Q  137 accgacctgggttactaaatatcttgcgttcttc 170  Q
    ||||| |||| |||  |||||||||| |||||||    
T  12607290 accgaactggattatcaaatatcttgtgttcttc 12607257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 557
Target Start/End: Original strand, 14866790 - 14866843
Alignment:
Q  504 atgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccat 557  Q
    ||||||||||||||||||| ||||||||| |||||||||||  || ||||||||    
T  14866790 atgcggtttggtttggttcagttgacttttaaaataaaatctaaatcaaaccat 14866843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 48996066 - 48996179
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    ||||| || ||| |||||| | ||||| ||| ||| ||||||||||||||||||||| ||| ||||    |||| |||||||||| ||||| ||||||||    
T  48996066 taaaaatcatccaaaccgcgaaataaaaaagcatgtggtttggtttggttcggttgatttttaaaaagttatccaaaccaaaccaatgcggcttggattg 48996165  T
Q  572 gatcggttagtgcg 585  Q
    | ||| || |||||    
T  48996166 gttcgatttgtgcg 48996179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 554
Target Start/End: Complemental strand, 18536746 - 18536663
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaac 554  Q
    |||||| || ||| |||| ||||||||| ||| |  | |||||| ||||||||||||||||| |||| | ||||||||||||||    
T  18536746 ctaaaattcatccaaaccacaagataaaaaagcacacagtttgggttggttcggttgacttttaaaacacaatccgaaccaaac 18536663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 585
Target Start/End: Complemental strand, 40900184 - 40900066
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaa-----ataaaatccgaaccaaaccattgcggtttg 566  Q
    |||||||| ||| ||| || ||||||| ||| ||||||||||||||||||| ||||| ||| |||     ||  || || |||||||||| |||||||||    
T  40900184 taaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaaccaaaccaatgcggtttg 40900085  T
Q  567 gattggatcggttagtgcg 585  Q
    |||||| | |||| |||||    
T  40900084 gattggtttggtttgtgcg 40900066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 54274118 - 54274037
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||| || |||||||||||||||| | ||  ||||||||||||||||||||   | |||| ||||| ||| |||||||||||||    
T  54274118 taaaactcatccgaaccgcaagatagaaaatcatgcggtttggtttggttcg---ggcttttaaaatgaaaaccgaaccaaacca 54274037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 521
Target Start/End: Original strand, 6333299 - 6333347
Alignment:
Q  473 aaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggtt 521  Q
    ||||||| ||| |||||| ||||||| ||| ||||||||||||||||||    
T  6333299 aaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggtt 6333347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 591
Target Start/End: Complemental strand, 18319587 - 18319543
Alignment:
Q  547 aaccaaaccattgcggtttggattggatcggttagtgcgattttt 591  Q
    |||||||||| |||||||||| ||||||||||| ||||| |||||    
T  18319587 aaccaaaccaatgcggtttgggttggatcggttggtgcggttttt 18319543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 591
Target Start/End: Original strand, 18399094 - 18399138
Alignment:
Q  547 aaccaaaccattgcggtttggattggatcggttagtgcgattttt 591  Q
    |||||||||| |||||||||| ||||||||||| ||||| |||||    
T  18399094 aaccaaaccaatgcggtttgggttggatcggttggtgcggttttt 18399138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 29636768 - 29636820
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  29636768 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 29636820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 29644213 - 29644161
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  29644213 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 29644161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 32223420 - 32223336
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||| || || |||||||| ||| ||||||||||| || |||| ||| ||||| |||| | |||| |||||||||||    
T  32223420 taaaagtcatccaaatcgaaagataaaaaagcatgcggtttggatttgttccgtttacttttaaaacacaatctgaaccaaacca 32223336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 42557719 - 42557771
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  42557719 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 42557771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 50571046 - 50570994
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  50571046 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 50570994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 472 - 593
Target Start/End: Complemental strand, 27507592 - 27507471
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| |||||||||||||||||||||||||||  |||||||| |||||||||||||| |||||||||||| || ||||||| ||  ||||||||||    
T  27507592 taaaagtcatccgaaccgcaagataaataagtatgcaatttggtttagttcggttgacttttaaaataaaatccaaatcaaaccaatgatgtttggattg 27507493  T
Q  572 gatcggttagtgcgattttttt 593  Q
    |||| ||| |||||||||||||    
T  27507492 gatcagttggtgcgattttttt 27507471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 471 - 575
Target Start/End: Complemental strand, 2490130 - 2490026
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggatt 570  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||| ||  ||||| |||    
T  2490130 ctaaaagttatccgaaccgcaagataaataagtatgcgatttggtttggttcagttgacttttaaaataaaattcgaaccaaaccaatgtagtttgaatt 2490031  T
Q  571 ggatc 575  Q
    |||||    
T  2490030 ggatc 2490026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 474 - 556
Target Start/End: Original strand, 12973543 - 12973625
Alignment:
Q  474 aaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||| |||||||    
T  12973543 aaagtcatccgaaccgcaagataaataaatatgcggtttggtttggtttggttgattttgaaaataaaatccgaatcaaacca 12973625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 481 - 574
Target Start/End: Complemental strand, 6694460 - 6694367
Alignment:
Q  481 tccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggat 574  Q
    ||||||||||||| |||||||||||| |||||| |||| || |||||||||| ||||||||||  ||||||||||| |||||||||||||||||    
T  6694460 tccgaaccgcaagttaaataagtatgtggtttgttttgtttaggttgacttttaaaataaaatttgaaccaaaccaatgcggtttggattggat 6694367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 470 - 593
Target Start/End: Original strand, 6248056 - 6248184
Alignment:
Q  470 actaaaagtcgtccgaaccgcaagataaataagtatgcggtt-----tggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtt 564  Q
    |||||||||| ||| |||||||||| ||||||||||||||||     |||||||||| |||||||||| ||||||||||  ||| ||||||| |||||||    
T  6248056 actaaaagtcatccaaaccgcaagaaaaataagtatgcggtttggtttggtttggtttggttgacttttaaaataaaatttgaatcaaaccaatgcggtt 6248155  T
Q  565 tggattggatcggttagtgcgattttttt 593  Q
    |||||||||| ||||  |||| |||||||    
T  6248156 tggattggataggttgatgcggttttttt 6248184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 8165652 - 8165568
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||| || ||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  8165652 taaaaatcatccgaaccgcaggataaagaagcatgcggtttggttcggttcggttgactttaaaaataaaatctgaaccaaacca 8165568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 473 - 593
Target Start/End: Original strand, 34914116 - 34914236
Alignment:
Q  473 aaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    ||||||| ||| ||| || | ||||| |||||||| |||||||||| || |||||||||| |||||||||| |||||||||||| || ||||||||||||    
T  34914116 aaaagtcatccaaactgcgaaataaaaaagtatgcagtttggtttgctttggttgacttttaaaataaaattcgaaccaaaccaatgtggtttggattgg 34914215  T
Q  573 atcggttagtgcgattttttt 593  Q
    |||||||  |||| |||||||    
T  34914216 atcggttgttgcggttttttt 34914236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 593
Target Start/End: Complemental strand, 16537938 - 16537817
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||  |||||||||||||| ||  |||||||||| ||||||| |||| ||||| ||||||||||||||||||||||| ||| |||||| |||    
T  16537938 taaaagtcatctaaaccgcaagataaaaaaacatgcggtttgatttggtttggttcacttttaaaataaaatccgaaccaaaccaatgcagtttgggttg 16537839  T
Q  572 gatcggttagtgcgattttttt 593  Q
    |||| |||  |||| |||||||    
T  16537838 gatctgttgatgcggttttttt 16537817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 508 - 593
Target Start/End: Complemental strand, 50952095 - 50952010
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgattttttt 593  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||  || |||||||| ||||| |||||||    
T  50952095 ggtttggtttggttcggttgacttttaaaataaaacccgaatcaaaccattgcggtttgagttagatcggttggtgcggttttttt 50952010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 36203544 - 36203460
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||| |||||||||||||| ||| |||||||||| |||||||||||||||||| |||||| |||||||||| |||||    
T  36203544 taaaagtcatccaaaccgcaagataaaaaagcatgcggtttgatttggttcggttgacttttaaaatacaatccgaaccgaacca 36203460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 471 - 641
Target Start/End: Original strand, 50471207 - 50471382
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaat-----ccgaaccaaaccattgcggttt 565  Q
    ||||||||| ||||||||| || ||||| ||||||||||||||||||||||| ||||  ||| ||||||||||     || |||||||||| ||||||||    
T  50471207 ctaaaagtcatccgaaccgtaaaataaaaaagtatgcggtttggtttggttcagttgcattttaaaataaaatccaaaccaaaccaaaccaatgcggttt 50471306  T
Q  566 ggattggatcggttagtgcgattttttttagaagataannnnnnnnngtttccaacattaaaatcaaattgaaaag 641  Q
     |||| |||||||| ||||  |||| ||||||  ||||         ||||||||||||||||||||||| |||||    
T  50471307 agattagatcggttggtgccgttttatttagacaataataattttttgtttccaacattaaaatcaaattaaaaag 50471382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 470 - 553
Target Start/End: Original strand, 3935436 - 3935519
Alignment:
Q  470 actaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaa 553  Q
    |||||||||| |  |||||| ||||||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||||||    
T  3935436 actaaaagtcatatgaaccgtaagataaataagtatgcagtatggtttgattcggttgacttttaaaataaaatccgaaccaaa 3935519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 471 - 556
Target Start/End: Complemental strand, 21685644 - 21685559
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| || ||||||||||||| | | | ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  21685644 ctaaaagtcatctgaaccgcaagatacaaatgcatgcggtttggtttggttcagttgacttttaaaataaaatcagaaccaaacca 21685559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 11074500 - 11074416
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||||||||  |||||||| ||  || |||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  11074500 taaaagtcttccgaaccttaagataaaaaaacatacggtttggtttggttcggttgactttaaaaataaaatctgaacctaacca 11074416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 471 - 591
Target Start/End: Complemental strand, 35980489 - 35980374
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggatt 570  Q
    ||||||||| ||||||||||||| |||| ||| ||| |||||||||| ||||| |||||||| ||||||||||     |||||||| |||||||||| ||    
T  35980489 ctaaaagtcatccgaaccgcaaggtaaaaaagcatgtggtttggttttgttcgattgacttttaaaataaaat-----ccaaaccaatgcggtttggttt 35980395  T
Q  571 ggatcggttagtgcgattttt 591  Q
     |||||||| ||||| |||||    
T  35980394 agatcggttggtgcggttttt 35980374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 475 - 554
Target Start/End: Complemental strand, 26345156 - 26345077
Alignment:
Q  475 aagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaac 554  Q
    ||||| ||||||||  || ||||| ||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  26345156 aagtcatccgaaccaaaaaataaaaaagtatgcggtttagtttgattcggttgacttttaaaataaaatccgaaccaaac 26345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 472 - 593
Target Start/End: Complemental strand, 32910470 - 32910344
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccat-----tgcggtttg 566  Q
    |||||||| ||| ||| |||||||||| ||  |||| ||||||||||||||||||||||||||||||| |||| |||||||| ||      |||||||||    
T  32910470 taaaagtcatccaaactgcaagataaaaaaacatgcagtttggtttggttcggttgactttaaaaatagaatctgaaccaaaacaaacaaatgcggtttg 32910371  T
Q  567 gattggatcggttagtgcgattttttt 593  Q
      ||||||||||| ||| |||||||||    
T  32910370 tgttggatcggttggtgtgattttttt 32910344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 471 - 593
Target Start/End: Complemental strand, 35980370 - 35980253
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggatt 570  Q
    ||||||||| ||||||||||||| |||| ||| ||| |||||||||| ||| |||||||||| ||||||||||     |||||||| || ||||||| ||    
T  35980370 ctaaaagtcatccgaaccgcaaggtaaaaaagcatgtggtttggttttgtttggttgacttttaaaataaaat-----ccaaaccaatgtggtttggttt 35980276  T
Q  571 ggatcggttagtgcgattttttt 593  Q
     |||||||| ||||| |||||||    
T  35980275 agatcggttggtgcggttttttt 35980253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 492 - 585
Target Start/End: Original strand, 33474449 - 33474542
Alignment:
Q  492 agataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcg 585  Q
    ||||||| ||| ||||||||| ||||||||||||||| ||||||||    |||| |||||||||| ||||||||||||||| |||||| |||||    
T  33474449 agataaaaaagcatgcggtttagtttggttcggttgattttaaaaaagtcatccaaaccaaaccaatgcggtttggattggttcggtttgtgcg 33474542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 484 - 593
Target Start/End: Original strand, 52828816 - 52828924
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtg 583  Q
    ||||||||||||||  ||| |||| |||||||||||| ||||||||||| ||||||||||| |||||||||||  ||| ||||  |||||||||||  ||    
T  52828816 gaaccgcaagataacaaagcatgctgtttggtttggt-cggttgacttttaaaataaaatctgaaccaaaccaacgcgatttgagttggatcggttgatg 52828914  T
Q  584 cgattttttt 593  Q
    ||| ||||||    
T  52828915 cgagtttttt 52828924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 484 - 556
Target Start/End: Original strand, 50153402 - 50153474
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||| |||||||||| || |||| |||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  50153402 gaactgcaagataaaaaaatatgtggtttgattttgttcggttgacttttaaaataaaatccgaaccaaacca 50153474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 579
Target Start/End: Complemental strand, 10847588 - 10847521
Alignment:
Q  512 tggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggtt 579  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||| |||||| ||||    
T  10847588 tggtttggttcggttgactttgaaaataaaatcagaaccaaaccaatgtggtttgggttggattggtt 10847521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 25560097 - 25560017
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| | ||||||| |||||||| |||||||||||||||   ||||||||||||||| ||||| |||||||||||||||||    
T  25560097 taaaagtcattcgaaccgtaagataaaaaagtatgcggtttgg---ggttcggttgacttttaaaat-aaatccgaaccaaacca 25560017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 552
Target Start/End: Original strand, 17989028 - 17989108
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaa 552  Q
    ||||||||| || ||| ||||||||||| ||  || ||||||| |||||||||||||||||| |||||||||||||||||||    
T  17989028 ctaaaagtcatctgaatcgcaagataaa-aaccatacggtttgatttggttcggttgacttttaaaataaaatccgaaccaa 17989108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 492 - 592
Target Start/End: Original strand, 9330388 - 9330488
Alignment:
Q  492 agataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgattttt 591  Q
    ||||||| ||||||| |||||||||| |||||||||||||| |||||| | || ||| ||||||| ||| |||||| || |||| ||| ||||| |||||    
T  9330388 agataaaaaagtatgtggtttggtttagttcggttgacttttaaaatacattctgaatcaaaccaatgcagtttgggtttgatcagttggtgcggttttt 9330487  T
Q  592 t 592  Q
    |    
T  9330488 t 9330488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 40095522 - 40095438
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||  ||||||||||||||||||||| |||||||||||| ||| ||||||| | ||| |||||||||  | ||||||||||    
T  40095522 taaaagttatccgaaccgcaagataaataaatatgcggtttggcttgtttcggtttatttttaaaataaaactcaaaccaaacca 40095438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 494 - 549
Target Start/End: Original strand, 27350662 - 27350717
Alignment:
Q  494 ataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaac 549  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||| |||||    
T  27350662 ataaataagtatgcggtttggtttggttcaattgacttttaaaataaaattcgaac 27350717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 554
Target Start/End: Complemental strand, 52380824 - 52380741
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaac 554  Q
    ||||||||| |  |||| |||||||| |||| ||||||||||||||| |||||||||||||| ||||||| ||  |||||||||    
T  52380824 ctaaaagtcatatgaactgcaagatatataactatgcggtttggtttagttcggttgacttttaaaataagatttgaaccaaac 52380741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 548
Target Start/End: Original strand, 21905207 - 21905284
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaa 548  Q
    |||||||||||| || | |||| ||||| ||| ||||| |||||||||||||||||| |||| | |||||||||||||    
T  21905207 ctaaaagtcgtctgatctgcaacataaaaaagaatgcgatttggtttggttcggttggctttgataataaaatccgaa 21905284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 556
Target Start/End: Original strand, 33769858 - 33769943
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| ||||||||  | |||||| | ||||||||||||||||| |||||||| |||| ||||| ||| | |||||||||||    
T  33769858 ctaaaagtcatccgaaccatatgataaaaatgtatgcggtttggtttgattcggttgcctttcaaaatgaaaactgaaccaaacca 33769943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 473 - 585
Target Start/End: Complemental strand, 1161842 - 1161730
Alignment:
Q  473 aaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    ||||||| |||||||||| ||||||| ||| ||| |||||||||||||| |||||| ||| ||||    |||| |||||||||| ||| | || ||||||    
T  1161842 aaaagtcatccgaaccgcgagataaaaaagcatgtggtttggtttggtttggttgatttttaaaaagtcatccaaaccaaaccaatgcagcttcgattgg 1161743  T
Q  573 atcggttagtgcg 585  Q
     |||||| |||||    
T  1161742 ttcggtttgtgcg 1161730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 556
Target Start/End: Original strand, 16062856 - 16062928
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||| ||||| |||||||||  ||||||||||| ||| ||||||||| |||||||||| |||| |||||||    
T  16062856 gaaccgtaagattaataagtatctggtttggtttgattcagttgacttttaaaataaaattcgaatcaaacca 16062928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 483 - 554
Target Start/End: Original strand, 35375168 - 35375239
Alignment:
Q  483 cgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaac 554  Q
    ||||||| ||||| || ||| ||||||| | |||||||| | |||||||| |||||||||||||||||||||    
T  35375168 cgaaccgtaagattaaaaagcatgcggtatagtttggtttgtttgacttttaaaataaaatccgaaccaaac 35375239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 556
Target Start/End: Complemental strand, 9962250 - 9962164
Alignment:
Q  470 actaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||| |||||| ||||||||||| ||  | ||||||| ||||| || ||||||||||  ||||||||| | ||||||||||    
T  9962250 actaaaagtcatccgaatcgcaagataaaaaaacaggcggttttgtttgatttggttgacttttcaaataaaattcaaaccaaacca 9962164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 549
Target Start/End: Original strand, 17651756 - 17651810
Alignment:
Q  495 taaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaac 549  Q
    |||| ||| |||||||||| ||| |||||||||||||| ||||||||||||||||    
T  17651756 taaaaaagcatgcggtttgattttgttcggttgacttttaaaataaaatccgaac 17651810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 483 - 540
Target Start/End: Original strand, 44055705 - 44055762
Alignment:
Q  483 cgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataa 540  Q
    ||||| |||||||||| ||  ||||| |||||||| ||||||||||||||||||||||    
T  44055705 cgaactgcaagataaaaaaacatgcgatttggtttagttcggttgactttaaaaataa 44055762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 585
Target Start/End: Complemental strand, 51252516 - 51252403
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| |||||| ||||||| ||| ||| |||||||||||||| |||||| ||| ||||    |||| ||||||| || ||||| ||| ||||    
T  51252516 taaaagtcatccaaaccgcgagataaaaaagcatgtggtttggtttggttgggttgatttttaaaaagtcatccaaaccaaatcaatgcggcttgaattg 51252417  T
Q  572 gatcggttagtgcg 585  Q
    | |||||| |||||    
T  51252416 gttcggtttgtgcg 51252403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 18309981 - 18310065
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||||||||||| |||||| ||  ||| | |||||||||||| |||||| ||| |||||||||  | ||||||||||    
T  18309981 taaaagtcatccgaaccgcatgataaaaaaacatgtgatttggtttggtttggttgaattttaaaataaaactcaaaccaaacca 18310065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 648
Target Start/End: Complemental strand, 6694328 - 6694293
Alignment:
Q  613 gtttccaacattaaaatcaaattgaaaagttaaaac 648  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6694328 gtttccaacattaaaatcaaattaaaaagttaaaac 6694293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 648
Target Start/End: Complemental strand, 26345008 - 26344973
Alignment:
Q  613 gtttccaacattaaaatcaaattgaaaagttaaaac 648  Q
    ||||||||||||||||||||||| ||||||||||||    
T  26345008 gtttccaacattaaaatcaaattaaaaagttaaaac 26344973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 532
Target Start/End: Original strand, 8268637 - 8268699
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataag-tatgcggtttggtttggttcggttgacttt 532  Q
    ||||||||| || ||||||||||||||| ||  ||||||| ||||||||||| ||||||||||    
T  8268637 ctaaaagtcatctgaaccgcaagataaacaaaatatgcgggttggtttggtttggttgacttt 8268699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 554
Target Start/End: Original strand, 50310587 - 50310669
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaac 554  Q
    |||||||  |||||| ||||||||||| ||  |||| |||| |||||||| | |||| ||| ||||||||| |||||||||||    
T  50310587 taaaagttatccgaatcgcaagataaaaaaacatgcagtttagtttggtttgattgaattttaaaataaaaaccgaaccaaac 50310669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 537
Target Start/End: Complemental strand, 16529601 - 16529536
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||||| ||| ||| || ||||||| ||| |||| |||||||||||||||||||| ||| ||||    
T  16529601 taaaagtcatccaaactgcgagataaaaaagcatgccgtttggtttggttcggttgatttttaaaa 16529536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 565
Target Start/End: Complemental strand, 27770272 - 27770200
Alignment:
Q  492 agataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggttt 565  Q
    ||||||| || ||||||||||| ||||||||| || ||||| |||||||||  |||||||||||| || |||||    
T  27770272 agataaaaaaatatgcggtttg-tttggttcgattaacttttaaaataaaaatcgaaccaaaccaatgtggttt 27770200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 537
Target Start/End: Original strand, 32954039 - 32954084
Alignment:
Q  492 agataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    ||||||| ||| ||||||||||||||||||||||||| ||| ||||    
T  32954039 agataaaaaagcatgcggtttggtttggttcggttgatttttaaaa 32954084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 8211273 - 8211325
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  8211273 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 8211325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 556
Target Start/End: Original strand, 24629964 - 24630008
Alignment:
Q  512 tggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||| |||||||||| |||||||||||  ||||||||||    
T  24629964 tggtttggtttggttgacttttaaaataaaatcttaaccaaacca 24630008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 537
Target Start/End: Complemental strand, 39256736 - 39256672
Alignment:
Q  473 aaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    ||||||| | ||||| || ||||||| ||| ||||||||| ||||||||||||||| ||| ||||    
T  39256736 aaaagtcattcgaactgcgagataaaaaagcatgcggtttagtttggttcggttgatttttaaaa 39256672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 472 - 584
Target Start/End: Original strand, 36567703 - 36567815
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||  ||||||||| ||||| |||||||||||||||||||| |||| |||||||||| |||||||||| | |||||||||| ||||||||||||||    
T  36567703 taaaagttatccgaaccgtaagatgaataagtatgcggtttggttcggtttggttgacttttaaaataaaattcaaaccaaaccaatgcggtttggattg 36567802  T
Q  572 gatcggttagtgc 584  Q
    |||||||| ||||    
T  36567803 gatcggttggtgc 36567815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 27572146 - 27572062
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||||||||||||| |||| ||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  27572146 taaaagtcatccgaaccgcaaggtaaaaaagcatgcggtttggtttggttcggttgtcttttaaaataaaatccgaaccaaacca 27572062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 470 - 595
Target Start/End: Original strand, 2588954 - 2589079
Alignment:
Q  470 actaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggat 569  Q
    |||||||||| |  |||||| |||||||| ||  |||||||||||||||||| |||||||||| |||||||| || |||||||| |  |||||||||| |    
T  2588954 actaaaagtcatttgaaccgtaagataaaaaaacatgcggtttggtttggtttggttgacttttaaaataaattcagaaccaaatcgatgcggtttgggt 2589053  T
Q  570 tggatcggttagtgcgatttttttta 595  Q
    |||||||||| ||||| |||||||||    
T  2589054 tggatcggttggtgcggtttttttta 2589079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 471 - 556
Target Start/End: Complemental strand, 35240926 - 35240841
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||| || ||||||||| ||| | || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35240926 ctaaaattcatccgaaccgtaagctgaaaaagtatgcggtttgatttggttcggttgactttaaaaataaaatccgaaccaaacca 35240841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 472 - 572
Target Start/End: Original strand, 40884312 - 40884412
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| | |||||||||||||||| |||||||| ||||||||| ||||||| |||||| ||||||||||   |||||||||| ||| ||||||||||    
T  40884312 taaaagtcattcgaaccgcaagataaaaaagtatgctgtttggtttagttcggtcgacttttaaaataaaatttaaaccaaaccaatgcagtttggattg 40884411  T
Q  572 g 572  Q
    |    
T  40884412 g 40884412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 513 - 594
Target Start/End: Original strand, 36760136 - 36760217
Alignment:
Q  513 ggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgatttttttt 594  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||  ||||||||||| ||||| ||||||||    
T  36760136 ggtttggttcgattgacttttaaaataaaatccgaaccaaaccaatgtggtttgagttggatcggttggtgcgttttttttt 36760217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 500 - 556
Target Start/End: Complemental strand, 17132163 - 17132107
Alignment:
Q  500 aagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  17132163 aagtatgcggtttgatttggttcggttgacttttaaaataaaatccgaaccaaacca 17132107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 508 - 591
Target Start/End: Original strand, 2422824 - 2422907
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgattttt 591  Q
    |||||||||||||| |||||||||| |||||| |||| | ||||||||| ||| |||| ||||||||||||||||||| |||||    
T  2422824 ggtttggtttggtttggttgacttttaaaatataatctggaccaaaccaatgcagtttagattggatcggttagtgcggttttt 2422907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 519 - 592
Target Start/End: Complemental strand, 2797190 - 2797117
Alignment:
Q  519 gttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgatttttt 592  Q
    |||||||||||||| ||||||||||| ||| |||||||  ||||||||||||||||||||| ||||| ||||||    
T  2797190 gttcggttgactttgaaaataaaatctgaatcaaaccaacgcggtttggattggatcggttggtgcgttttttt 2797117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 471 - 556
Target Start/End: Original strand, 25495065 - 25495150
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| ||  |||||||| |||||||||||||| |||||||||  ||||||||| ||| |||||||||||||||| ||||||    
T  25495065 ctaaaagtcatctaaaccgcaacataaataagtatgcagtttggtttttttcggttgatttttaaaataaaatccgaacaaaacca 25495150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 32244449 - 32244396
Alignment:
Q  500 aagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaa 553  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  32244449 aagtatgcggtttgatttggttcggttgacttttaaaataaaatccgaaccaaa 32244396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 508 - 565
Target Start/End: Complemental strand, 40331555 - 40331498
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggttt 565  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||    
T  40331555 ggtttggtttggttcggttgacttttaaaataaaatccgaaccaaatcattgcagttt 40331498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 472 - 591
Target Start/End: Complemental strand, 20192080 - 20191956
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaac-----caaaccattgcggtttg 566  Q
    |||||||| || |||| ||||||| || ||  ||| | |||| |||||||||||||||||| ||||||||||||||||     ||||||| |||||||||    
T  20192080 taaaagtcatctgaactgcaagattaaaaaacatgtgatttgatttggttcggttgacttttaaaataaaatccgaactaaatcaaaccaatgcggtttg 20191981  T
Q  567 gattggatcggttagtgcgattttt 591  Q
     |||||||||||| ||||| |||||    
T  20191980 aattggatcggtttgtgcggttttt 20191956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 485 - 585
Target Start/End: Original strand, 42544653 - 42544753
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgc 584  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||| ||| || |    |||| |||||||||| ||||||||||||||| |||||| ||||    
T  42544653 aaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaagaagtcatccaaaccaaaccaatgcggtttggattggttcggtttgtgc 42544752  T
Q  585 g 585  Q
    |    
T  42544753 g 42544753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 490 - 556
Target Start/End: Original strand, 41454858 - 41454929
Alignment:
Q  490 caagataaataagtatgcggtttggttt-----ggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||||||||||||||||||||     ||||||||||||||| ||||||||||| |||||||||||    
T  41454858 caagataaataagtatgcggtttggtttggttcggttcggttgacttttaaaataaaatctgaaccaaacca 41454929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 519 - 592
Target Start/End: Complemental strand, 2803352 - 2803279
Alignment:
Q  519 gttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgatttttt 592  Q
    |||||||||||||| ||||||||||  ||| |||||||  ||||||||||||||||||||| ||||| ||||||    
T  2803352 gttcggttgactttgaaaataaaatatgaatcaaaccaacgcggtttggattggatcggttggtgcgttttttt 2803279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 526
Target Start/End: Original strand, 10090286 - 10090341
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggtt 526  Q
    ||||||||| || |||||||||||||||||||||||||||||| ||| ||||||||    
T  10090286 ctaaaagtcatcagaaccgcaagataaataagtatgcggtttgatttagttcggtt 10090341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 572
Target Start/End: Complemental strand, 27886504 - 27886417
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    |||| |||||||||| |||||||||||||||    
T  27886504 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 27886417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 14652453 - 14652518
Alignment:
Q  491 aagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||  ||||| |||| |||||||| ||||||||||||||||||||| |||||||||||    
T  14652453 aagataaaaaaacatgcgatttgatttggttcagttgactttaaaaataaaatctgaaccaaacca 14652518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 488 - 556
Target Start/End: Complemental strand, 28224949 - 28224881
Alignment:
Q  488 cgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||||| ||||| |||||||||| |||||||   ||| |||||||||||| ||||||||||    
T  28224949 cgcaagataaataaatatgcagtttggtttgtttcggttcttttttaaaataaaatccaaaccaaacca 28224881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 519 - 648
Target Start/End: Complemental strand, 691608 - 691478
Alignment:
Q  519 gttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcga-ttttttttagaagataannnnnnnnngtttc 617  Q
    |||||||||||||||||||||| || | |||||||| | |||| ||||| |||||||||||  | ||| ||||||  ||| |||||         |||||    
T  691608 gttcggttgactttaaaaataacattcaaaccaaactaatgcgctttgggttggatcggttgatacgagttttttcgagacgataatttttttttgtttc 691509  T
Q  618 caacattaaaatcaaattgaaaagttaaaac 648  Q
    ||||||||||||||| || ||||||||||||    
T  691508 caacattaaaatcaagttaaaaagttaaaac 691478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 30002006 - 30002093
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||  ||| ||||    |||| |||||||||| |||||||||||||||    
T  30002006 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgttttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 30002093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 556
Target Start/End: Complemental strand, 22747672 - 22747590
Alignment:
Q  474 aaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||| ||||||||||||||||||     |||||||||| ||||||||| |||||||| ||||||||||  |||| ||||||    
T  22747672 aaagtcatccgaaccgcaagataaaagtacatgcggtttgatttggttcgattgacttttaaaataaaatttgaacaaaacca 22747590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 543
Target Start/End: Original strand, 40692494 - 40692547
Alignment:
Q  489 gcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaat 543  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||    
T  40692494 gcaagataaa-aagcatgcgatttggtttggttcggttgacttttaaaataaaat 40692547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 572
Target Start/End: Complemental strand, 667680 - 667615
Alignment:
Q  507 cggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    |||||||||||||||||||||| ||| ||||    |||| |||||||||| |||||||||||||||    
T  667680 cggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 667615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 556
Target Start/End: Complemental strand, 1048795 - 1048730
Alignment:
Q  491 aagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||  ||||||||||||||||| || ||||||||  ||||||||||| ||||||||||    
T  1048795 aagataaaaaaacatgcggtttggtttggtccgattgacttttgaaataaaatccaaaccaaacca 1048730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 556
Target Start/End: Original strand, 34087413 - 34087486
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatc-cgaaccaaacca 556  Q
    |||| ||||||||||||||||| |  |||||||| |||| ||||||||| || |||||||| ||||||||||||    
T  34087413 gaactgcaagataaataagtatacaatttggtttagttcagttgacttttaagataaaatctcgaaccaaacca 34087486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 537
Target Start/End: Complemental strand, 36177206 - 36177141
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||||| ||| |||||| ||||||| | | ||||||||||||||||||||||||| ||| ||||    
T  36177206 taaaagtcatccaaaccgcgagataaaaatgcatgcggtttggtttggttcggttgatttttaaaa 36177141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 556
Target Start/End: Original strand, 6633341 - 6633385
Alignment:
Q  512 tggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||| |||||||||| ||||||||||| |||||||||||    
T  6633341 tggtttggtttggttgacttttaaaataaaatctgaaccaaacca 6633385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 8408985 - 8409037
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||||||||||||||||||||||||||||| ||| ||||    
T  8408985 aaccgcgagagaaaaaagtatgcggtttggtttggttcggttgatttttaaaa 8409037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 556
Target Start/End: Original strand, 11402604 - 11402656
Alignment:
Q  504 atgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||| ||||||  |||||||||||||||| ||||| ||||||||||||    
T  11402604 atgcggttttgtttggcccggttgactttaaaaacaaaattcgaaccaaacca 11402656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 572
Target Start/End: Complemental strand, 12166245 - 12166165
Alignment:
Q  492 agataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    ||||||| ||| |||| |||||||||||||||||||| ||| ||||    |||| |||||||||| ||||| |||||||||    
T  12166245 agataaaaaagcatgcagtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggcttggattgg 12166165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 579
Target Start/End: Original strand, 10174099 - 10174174
Alignment:
Q  504 atgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggtt 579  Q
    |||||||||||||| ||| |||||| ||| ||||    |||| |||||||||| ||||||||||||||| ||||||    
T  10174099 atgcggtttggtttcgtttggttgatttttaaaaagttatccaaaccaaaccaatgcggtttggattggttcggtt 10174174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 556
Target Start/End: Original strand, 6594997 - 6595043
Alignment:
Q  510 tttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||| ||||||||||||||||||||||| |||| || |||||||    
T  6594997 tttggttcggttcggttgactttaaaaataacatccaaatcaaacca 6595043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 16842576 - 16842494
Alignment:
Q  87 agtgtatttcctttcttggcataaatgtctctcgatgtatgtgacattgcaccgacctgggttactaaatatcttgcgttctt 169  Q
    |||| |||||||||||||||||  ||| |||  |||||| ||||| ||||||||| |||| |||| |||| ||||| ||||||    
T  16842576 agtgaatttcctttcttggcatggatgcctccagatgtaggtgacgttgcaccgaactggattaccaaatctcttgggttctt 16842494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 589
Target Start/End: Complemental strand, 17085338 - 17085221
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| |||| | ||||||| ||| ||||| ||| ||||||||||||||| ||| ||||    |||| || ||||||| || || |||||||     
T  17085338 taaaagtcatccaaaccacgagataaaaaagcatgcgatttagtttggttcggttgatttttaaaaagtcatcccaatcaaaccaatgtggcttggattc 17085239  T
Q  572 gatcggttagtgcgattt 589  Q
    | |||||| |||||||||    
T  17085238 gttcggttggtgcgattt 17085221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 11917400 - 11917452
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  11917400 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 11917452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 12681130 - 12681070
Alignment:
Q  512 tggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    ||||||||||||||||| ||| ||||    |||| |||||||||| |||||||||||||||    
T  12681130 tggtttggttcggttgatttttaaaaattcatccaaaccaaaccaatgcggtttggattgg 12681070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 595
Target Start/End: Original strand, 18845573 - 18845620
Alignment:
Q  547 aaccaaaccattgcggtttggattggatcggttagtgcgatttttttta 595  Q
    |||||||||| |||||||||| ||||||||||| |||| ||||||||||    
T  18845573 aaccaaaccactgcggtttgggttggatcggttggtgc-atttttttta 18845620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 30265879 - 30265827
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||||||||||| ||  |||| |||||||||||||||||||| ||| ||||    
T  30265879 aaccgcaagataaaaaaacatgcagtttggtttggttcggttgatttttaaaa 30265827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 33792655 - 33792706
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||| ||| ||||    
T  33792655 aaccgcaagataaataa-tatgtggtttggttcggttcggttgatttttaaaa 33792706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 470 - 593
Target Start/End: Original strand, 41461061 - 41461189
Alignment:
Q  470 actaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaat-----ccgaaccaaaccattgcggtt 564  Q
    ||||||||||  |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||     || |||||||||| |||||||    
T  41461061 actaaaagtcaaccgaaccgcaagctaaaaaagtatgcggtttggtttggttcggttgacttttaaaataaaattcgaaccaaaccaaaccaatgcggtt 41461160  T
Q  565 tggattggatcggttagtgcgattttttt 593  Q
    ||||||| ||||||| ||||| |||||||    
T  41461161 tggattgaatcggttggtgcggttttttt 41461189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 474 - 585
Target Start/End: Original strand, 44085472 - 44085584
Alignment:
Q  474 aaagtcgtccgaaccgcaagataaataa-gtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    |||||| || ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||||    
T  44085472 aaagtcatctgaaccgcaagataaaaaaagcatgcggtttggtttggttcggttgactttaaaaataaaatctgaatcaaaccaatgcggtttgggttgg 44085571  T
Q  573 atcggttagtgcg 585  Q
    ||||||| |||||    
T  44085572 atcggttggtgcg 44085584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 471 - 592
Target Start/End: Complemental strand, 12041691 - 12041571
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggatt 570  Q
    ||||||||| || |||||| |||||||| ||  |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||    
T  12041691 ctaaaagtcatctgaaccgtaagataaaaaaacatgcggtttgatttggttcggttgacttttaaaataaaatccgaaccaaaccaatgcgg-ttgggtt 12041593  T
Q  571 ggatcggttagtgcgatttttt 592  Q
    ||||||||| ||||| ||||||    
T  12041592 ggatcggttggtgcggtttttt 12041571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 481 - 593
Target Start/End: Original strand, 1331000 - 1331112
Alignment:
Q  481 tccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggtta 580  Q
    |||||||| |||| |||| ||| |||| | |||||||||||||||||||||| |||||||||||| |||||||||| || ||||||| ||||||| |||     
T  1331000 tccgaaccacaaggtaaaaaagcatgcagattggtttggttcggttgacttttaaaataaaatccaaaccaaaccaatgtggtttgggttggatcagttg 1331099  T
Q  581 gtgcgattttttt 593  Q
    ||||| |||||||    
T  1331100 gtgcggttttttt 1331112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 488 - 556
Target Start/End: Complemental strand, 5862716 - 5862648
Alignment:
Q  488 cgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5862716 cgcaaaataaaaaagtatgcggtttggtttggttcggttgacttttaaaataaaatccgaaccaaacca 5862648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 471 - 593
Target Start/End: Original strand, 17762722 - 17762849
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaac-----caaaccattgcggttt 565  Q
    |||||||||  ||||||||| ||||||| ||  ||||||||||||||||||||||||||||| ||||||||||||||||     ||||||  || |||||    
T  17762722 ctaaaagtcaaccgaaccgcgagataaaaaaacatgcggtttggtttggttcggttgacttttaaaataaaatccgaaccaaatcaaaccgatgtggttt 17762821  T
Q  566 ggattggatcggttagtgcgattttttt 593  Q
    ||||||||| |||| ||||| |||||||    
T  17762822 ggattggattggttggtgcggttttttt 17762849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 472 - 577
Target Start/End: Complemental strand, 44979870 - 44979765
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| |||||| ||||||| ||| ||||||||||||||||||||||||| ||| ||||    |||| |||||||||| ||||||||||||||    
T  44979870 taaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattg 44979771  T
Q  572 gatcgg 577  Q
    | ||||    
T  44979770 gttcgg 44979765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 27301585 - 27301501
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||| | |||| ||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||  |||||||||||    
T  27301585 taaaagccatccggaccgcaagataaaaaagcatgcggtttggtttgattcggttgacttttaaaataaaatttgaaccaaacca 27301501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 28790487 - 28790571
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| || ||||||||||||||| ||| |||||||||| || | ||||||||||||| |||||||||||| ||||||||||    
T  28790487 taaaagtcatctgaaccgcaagataaaaaagcatgcggtttgattagattcggttgacttttaaaataaaatccaaaccaaacca 28790571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 508 - 647
Target Start/End: Original strand, 11678014 - 11678154
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaacca---aaccattgcggtttggattggatcggttagtgcgattttttttagaagataan 604  Q
    |||||| |||||||||||||||||| ||||||||||||||||||   ||| ||||||||||| |||||||||||| ||| | |||||| || |  ||||     
T  11678014 ggtttgatttggttcggttgacttttaaaataaaatccgaaccaaacaactattgcggtttgaattggatcggttggtgtggttttttataca--ataat 11678111  T
Q  605 nnnnnnnngtttccaacattaaaatcaaattgaaaagttaaaa 647  Q
            ||||||||||||||||||||||| ||||| |||||    
T  11678112 ttttttttgtttccaacattaaaatcaaattaaaaagctaaaa 11678154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 508 - 647
Target Start/End: Original strand, 11695492 - 11695632
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaacca---aaccattgcggtttggattggatcggttagtgcgattttttttagaagataan 604  Q
    |||||| |||||||||||||||||| ||||||||||||||||||   ||| ||||||||||| |||||||||||| ||| | |||||| || |  ||||     
T  11695492 ggtttgatttggttcggttgacttttaaaataaaatccgaaccaaacaactattgcggtttgaattggatcggttggtgtggttttttataca--ataat 11695589  T
Q  605 nnnnnnnngtttccaacattaaaatcaaattgaaaagttaaaa 647  Q
            ||||||||||||||||||||||| ||||| |||||    
T  11695590 ttttttttgtttccaacattaaaatcaaattaaaaagctaaaa 11695632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 484 - 592
Target Start/End: Original strand, 13193892 - 13194005
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaa-----ccattgcggtttggattggatcggt 578  Q
    |||||| |||||||| ||| || | |||||||||||||||||||||||| ||||||||||||||||||||     ||| ||| |||||| ||||||||||    
T  13193892 gaaccgtaagataaaaaagcatactgtttggtttggttcggttgacttttaaaataaaatccgaaccaaatcaaaccaatgcagtttgggttggatcggt 13193991  T
Q  579 tagtgcgatttttt 592  Q
    | || || ||||||    
T  13193992 tggtacggtttttt 13194005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 472 - 593
Target Start/End: Original strand, 12884512 - 12884626
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| ||| ||| | |||| ||||||||||||||||||     |||||||||| |||||||||| | |||||||||| |  ||||| |||||    
T  12884512 taaaagtcatccaaactgcatggtaaaaaagtatgcggtttggttt-----ggttgacttttaaaataaaattcaaaccaaaccaat--ggttttgattg 12884604  T
Q  572 gatcggttagtgcgattttttt 593  Q
    |||||||||||||| |||||||    
T  12884605 gatcggttagtgcggttttttt 12884626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 504 - 572
Target Start/End: Original strand, 9811404 - 9811472
Alignment:
Q  504 atgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    ||||||||||||||||||||||||| ||| ||||    |||| |||||||||| |||||||||||||||    
T  9811404 atgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 9811472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 571
Target Start/End: Original strand, 11375883 - 11375982
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| |||||| ||||||| ||  |||| |||||||||||||||||||| ||| ||||    |||| |||||||||| ||||| ||||||||    
T  11375883 taaaagtcatccaaaccgcgagataaaaaaacatgcagtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggattggattg 11375982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 544 - 594
Target Start/End: Complemental strand, 36500661 - 36500611
Alignment:
Q  544 ccgaaccaaaccattgcggtttggattggatcggttagtgcgatttttttt 594  Q
    |||||||||||||||||||||||| ||||||||||| ||||  ||||||||    
T  36500661 ccgaaccaaaccattgcggtttgggttggatcggttggtgcagtttttttt 36500611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 495 - 593
Target Start/End: Complemental strand, 15320657 - 15320559
Alignment:
Q  495 taaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgattttttt 593  Q
    |||| ||| |||| ||| |||||||||| ||||| ||| |||||||||||| |||||||| | || ||||||  |||||| ||||  |||| |||||||    
T  15320657 taaaaaagcatgcagttaggtttggttcagttgatttttaaaataaaatccaaaccaaactaatgtggtttgttttggattggttgatgcggttttttt 15320559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 556
Target Start/End: Complemental strand, 30759727 - 30759665
Alignment:
Q  494 ataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||| ||| |||| |||||||||| |||||||| |||| ||||||||||  |||||||||||    
T  30759727 ataaaaaagcatgcagtttggtttgattcggttggcttttaaaataaaatttgaaccaaacca 30759665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 537
Target Start/End: Original strand, 44035287 - 44035353
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataa-gtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||||| ||| |||||||| ||||| || | ||||||||||||||||||||||||| ||| ||||    
T  44035287 taaaagtcatccaaaccgcaaaataaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 44035353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 21480870 - 21480829
Alignment:
Q  515 tttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||||||||| ||||||||||| |||| ||||||    
T  21480870 tttggttcggttgacttttaaaataaaatctgaactaaacca 21480829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 36075381 - 36075465
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||  ||||||||||| |||||| ||| ||| ||||||||||| ||| ||| ||||| |||||| || || || |||||||    
T  36075381 taaaagttatccgaaccgcaggataaaaaagcatgtggtttggtttgattcagttcacttttaaaatataaaccaaatcaaacca 36075465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 36413728 - 36413676
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  36413728 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 36413676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 472 - 579
Target Start/End: Complemental strand, 7428534 - 7428427
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| || |||||||| |||||| | | ||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||||    
T  7428534 taaaagtcatctgaaccgcatgataaaaatgcatgcggtttggtttggttcggttgacttttaaaataaaattcgaaccaaactaatgcggtttggattg 7428435  T
Q  572 gatcggtt 579  Q
    ||| ||||    
T  7428434 gattggtt 7428427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 508 - 579
Target Start/End: Complemental strand, 12660321 - 12660250
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggtt 579  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  12660321 ggtttggtttggttcggttgagtttaaaaataaaatccgaaccaaacaaatgcggtttggattggattggtt 12660250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 589
Target Start/End: Original strand, 10661135 - 10661252
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| |||||| ||||||| ||| ||||||||||||||||||||||||| ||| ||||    |||| |||||||||| ||||||||| ||||    
T  10661135 taaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttgtattg 10661234  T
Q  572 gatcggttagtgcgattt 589  Q
    | |||||| |||||||||    
T  10661235 gttcggtttgtgcgattt 10661252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 471 - 556
Target Start/End: Complemental strand, 24682192 - 24682108
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||| || ||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||| ||||||||||||    
T  24682192 ctaaaattcatccgaaccgcaagataaataagtatgcagtttggtttgattcgattgacttttaaaataaaat-cgaaccaaacca 24682108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 504 - 592
Target Start/End: Original strand, 40436450 - 40436543
Alignment:
Q  504 atgcggtttggtttggttcggttgactttaaaaataaaat-----ccgaaccaaaccattgcggtttggattggatcggttagtgcgatttttt 592  Q
    |||| |||||||||||||||||||||||||||||||||||     ||||||||||||| |||||||||| ||||||||||| ||||| ||||||    
T  40436450 atgccgtttggtttggttcggttgactttaaaaataaaatttgaaccgaaccaaaccaatgcggtttgggttggatcggttggtgcggtttttt 40436543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 44336753 - 44336838
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagt-atgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| |||||||||||||||||| ||   ||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  44336753 taaaagtcatccgaaccgcaagataaaaaaaacatgcggtttggtttggttcggttgacttttaaaatacaatccgaaccaaacca 44336838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 471 - 541
Target Start/End: Original strand, 11218930 - 11219000
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaa 541  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  11218930 ctaaaagtcatccgaaacgcaagataaataagtatgcgatttggtttggtttggttgacttttaaaataaa 11219000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 471 - 552
Target Start/End: Complemental strand, 22811275 - 22811194
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaa 552  Q
    ||||||||| || |||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||||||  |||||||    
T  22811275 ctaaaagtcatctgaactgcaagataaatatgtatgctgtttggtttggttcggttgacttttaaaataaaatttgaaccaa 22811194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 471 - 597
Target Start/End: Original strand, 33565935 - 33566073
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataa--gtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccat----------t 558  Q
    ||||||||| |  ||||||||||||||| ||  ||||||||||||||||||||||||||||||  |||||||||| ||||||||||||           |    
T  33565935 ctaaaagtcatttgaaccgcaagataaaaaaaagtatgcggtttggtttggttcggttgacttctaaaataaaattcgaaccaaaccaaaccaaaccagt 33566034  T
Q  559 gcggtttggattggatcggttagtgcgattttttttaga 597  Q
    ||||||| ||||||||||||| ||||| |||||||||||    
T  33566035 gcggttttgattggatcggttggtgcggttttttttaga 33566073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 500 - 556
Target Start/End: Complemental strand, 36340833 - 36340777
Alignment:
Q  500 aagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  36340833 aagtatgcggtttgatttggttcggttgacttttaaaataaaatccgaaccaaacca 36340777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 4785217 - 4785301
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| | |||||||||  ||||| |||||||||||||| |||||||||||||||||| |||||| |||  |||||||||||    
T  4785217 taaaagtcatacgaaccgcagaataaaaaagtatgcggtttgatttggttcggttgacttttaaaatataatatgaaccaaacca 4785301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 517 - 592
Target Start/End: Complemental strand, 12193514 - 12193439
Alignment:
Q  517 tggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgatttttt 592  Q
    ||||||| |||||||| ||||||||||| |||||||| || ||||||||||||||||||||||  |||| ||||||    
T  12193514 tggttcgattgacttttaaaataaaatctgaaccaaatcaatgcggtttggattggatcggttgatgcggtttttt 12193439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 517 - 592
Target Start/End: Complemental strand, 12437942 - 12437867
Alignment:
Q  517 tggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattggatcggttagtgcgatttttt 592  Q
    ||||||| |||||||| ||||||||||| |||||||| || ||||||||||||||||||||||  |||| ||||||    
T  12437942 tggttcgattgacttttaaaataaaatctgaaccaaatcaatgcggtttggattggatcggttgatgcggtttttt 12437867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 471 - 570
Target Start/End: Complemental strand, 28073293 - 28073194
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggatt 570  Q
    ||||||||| || ||||||||| ||||| ||  ||| ||||| ||||||||| ||||||||| ||||| ||| ||||||||||||| || ||||||||||    
T  28073293 ctaaaagtcatctgaaccgcaatataaaaaaacatgtggtttagtttggttcagttgacttttaaaatgaaaaccgaaccaaaccaatgtggtttggatt 28073194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 508 - 556
Target Start/End: Complemental strand, 31497664 - 31497616
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  31497664 ggtttggtttggttcggttgactttaaaaataacatccaaaccaaacca 31497616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 471 - 592
Target Start/End: Complemental strand, 9012934 - 9012813
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccat-----tgcggttt 565  Q
    |||||||||  ||||||||||||||||| | || |||||||||||||| ||     |||||| |||||| ||||||||||||||||      ||||||||    
T  9012934 ctaaaagtcacccgaaccgcaagataaaaatgtgtgcggtttggtttgatt-----gacttttaaaatacaatccgaaccaaaccaaaccaatgcggttt 9012840  T
Q  566 ggattggatcggttagtgcgatttttt 592  Q
    || ||||||||||| ||||| ||||||    
T  9012839 gggttggatcggttggtgcggtttttt 9012813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 12883831 - 12883777
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggtt 526  Q
    |||||||| | |||||| ||| |||||||||||||||||||||||||||||||||    
T  12883831 taaaagtcattcgaaccacaaaataaataagtatgcggtttggtttggttcggtt 12883777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 537
Target Start/End: Original strand, 33068247 - 33068312
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||||| ||| |||||||||||||| ||| ||||||||||||||||||| ||||| ||| ||||    
T  33068247 taaaagtcatccaaaccgcaagataaaaaagcatgcggtttggtttggttcagttgatttttaaaa 33068312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 508 - 556
Target Start/End: Original strand, 6591245 - 6591293
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||||||||||||||||| |||||||||| | ||||||||||    
T  6591245 ggtttggtttggttcggttgacttttaaaataaaattctaaccaaacca 6591293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 472 - 572
Target Start/End: Original strand, 44672770 - 44672870
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||| || ||| ||||||| ||  |||||||||||||||||||| |||| ||| ||||    |||| |||||||||| ||||||||||||||    
T  44672770 taaaagtcatccaaatcgcgagataaaaaaacatgcggtttggtttggttcgattgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattg 44672869  T
Q  572 g 572  Q
    |    
T  44672870 g 44672870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 556
Target Start/End: Original strand, 45366301 - 45366373
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||||||| ||| || ||||||| ||||||||||||| |||| ||||| ||| ||||| |||||||    
T  45366301 gaaccgcaagataaaaaagcatacggtttgatttggttcggttgccttttaaaatgaaaaccgaatcaaacca 45366373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 8036024 - 8036079
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttg 527  Q
    |||||||| || ||||||||||||||| ||| |||| |||||||||||||||||||    
T  8036024 taaaagtcatctgaaccgcaagataaaaaagcatgcagtttggtttggttcggttg 8036079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 556
Target Start/End: Original strand, 6616940 - 6616988
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||| ||||||||||||| |||||||||| | ||||||||||    
T  6616940 ggtttggtttgtttcggttgacttttaaaataaaattctaaccaaacca 6616988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 15272407 - 15272323
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||||||| ||| |||||| ||| | ||||||||||||||||  |||||||||  ||  | ||||||||||||||||    
T  15272407 taaaagtcatccgaacggcaggataaaaaagcacgcggtttggtttggtttagttgacttttcaagcacaatccgaaccaaacca 15272323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 556
Target Start/End: Complemental strand, 15452776 - 15452692
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||||||| ||| |||||| ||| | ||||||||||||||||  |||||||||  ||  | ||||||||||||||||    
T  15452776 taaaagtcatccgaacggcaggataaaaaagcacgcggtttggtttggtttagttgacttttcaagcacaatccgaaccaaacca 15452692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 584
Target Start/End: Complemental strand, 36910432 - 36910321
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattg 571  Q
    |||||||| ||  |||||| ||||||| ||| ||||||||| ||||||||||||||| ||| ||||    |||| ||||||||||  |||| ||||||||    
T  36910432 taaaagtcatcaaaaccgcgagataaaaaagcatgcggtttagtttggttcggttgatttttaaaaagtcatccaaaccaaacca-agcggcttggattg 36910334  T
Q  572 gatcggttagtgc 584  Q
    | |||||| ||||    
T  36910333 gttcggtttgtgc 36910321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 556
Target Start/End: Original strand, 19539400 - 19539443
Alignment:
Q  513 ggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  19539400 ggtttggtatggttgacttttaaaataaaatccgaaccaaacca 19539443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 614 - 648
Target Start/End: Original strand, 4785364 - 4785398
Alignment:
Q  614 tttccaacattaaaatcaaattgaaaagttaaaac 648  Q
    |||||||||||||||||||||| ||||||||||||    
T  4785364 tttccaacattaaaatcaaattaaaaagttaaaac 4785398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 537
Target Start/End: Original strand, 14549205 - 14549270
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||||| ||| |||||  ||||||| || |||||||||||||||| ||||||||| ||| ||||    
T  14549205 taaaagtcatccaaaccgtgagataaaaaaatatgcggtttggtttgattcggttgatttttaaaa 14549270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 30254219 - 30254162
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtt-----tggttcggttgactttaaaaa 537  Q
    |||||||||||||||||| ||| |||||||||     |||||||||||||||||||||    
T  30254219 aaccgcaagataaataagcatgtggtttggttcggtttggttcggttgactttaaaaa 30254162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 521
Target Start/End: Original strand, 30392120 - 30392169
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggtt 521  Q
    |||||||| ||| |||||| ||||||| ||| ||||||||||||||||||    
T  30392120 taaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggtt 30392169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 3006660 - 3006608
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  3006660 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 3006608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 5803334 - 5803282
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    
T  5803334 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaa 5803282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 484 - 556
Target Start/End: Original strand, 62393 - 62465
Alignment:
Q  484 gaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||| ||| |||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  62393 gaaccgtaagctaaaaaagtatgcggtttgatttggttcggttgacttttaaaataaaatccgaaccaaacca 62465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 25845 - 25928
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| ||||||||| |||||||| ||  |||| |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  25845 taaaagtcatccgaaccgtaagataaaaaac-atgcagtttggtttggttcggttgacttttaaaataaaatccaaaccaaacca 25928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 472 - 556
Target Start/End: Original strand, 14504 - 14588
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    |||||||| |||||||||||||||||| ||| ||||| ||||||||||||| ||||||| | |||  | ||||||||||||||||    
T  14504 taaaagtcatccgaaccgcaagataaaaaagcatgcgatttggtttggttcagttgactcttaaagcacaatccgaaccaaacca 14588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 572
Target Start/End: Complemental strand, 5971 - 5884
Alignment:
Q  485 aaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaataaaatccgaaccaaaccattgcggtttggattgg 572  Q
    |||||| ||| ||| ||| ||||||||||||||||||||||||| ||| ||||    |||| |||||||||| |||||||||||||||    
T  5971 aaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 5884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 473 - 538
Target Start/End: Original strand, 106012 - 106077
Alignment:
Q  473 aaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaat 538  Q
    ||||||| ||| |||||||||||||| ||| ||| ||||||||||||||||||||| ||| |||||    
T  106012 aaaagtcatccaaaccgcaagataaaaaagcatgtggtttggtttggttcggttgatttttaaaat 106077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 537
Target Start/End: Original strand, 128618 - 128683
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||||| ||| |||||||||||||| ||| ||| ||||||||||||||| ||||| ||| ||||    
T  128618 taaaagtcatccaaaccgcaagataaaaaagcatgtggtttggtttggttctgttgatttttaaaa 128683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 537
Target Start/End: Complemental strand, 69641 - 69576
Alignment:
Q  472 taaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttgactttaaaaa 537  Q
    |||||||| ||| |||||| ||||||| ||| ||| ||||||||||||||||||||| ||| ||||    
T  69641 taaaagtcatccaaaccgcgagataaaaaagcatgtggtttggtttggttcggttgatttttaaaa 69576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 556
Target Start/End: Original strand, 6258 - 6306
Alignment:
Q  508 ggtttggtttggttcggttgactttaaaaataaaatccgaaccaaacca 556  Q
    ||||||||||| ||||||||||||| |||||||||| | ||||||||||    
T  6258 ggtttggtttgattcggttgacttttaaaataaaattctaaccaaacca 6306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 1139 - 1195
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttga 528  Q
    ||||||||| |||||||||||||||||| ||  ||| |||||||| ||||||||||||    
T  1139 ctaaaagtcatccgaaccgcaagataaa-aaacatgtggtttggtgtggttcggttga 1195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 7708 - 7764
Alignment:
Q  471 ctaaaagtcgtccgaaccgcaagataaataagtatgcggtttggtttggttcggttga 528  Q
    ||||||||| |||||||||||||||||| ||  ||| |||||||| ||||||||||||    
T  7708 ctaaaagtcatccgaaccgcaagataaa-aaacatgtggtttggtgtggttcggttga 7764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University