View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5549_low_22 (Length: 219)
Name: NF5549_low_22
Description: NF5549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5549_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 49927074 - 49927268
Alignment:
| Q |
9 |
catcatcacatattcacgggtaatttccctttgaatttaaagatatagtaccaaatatattattgcaatctacctaacacaatggcacaaactcccaaaa |
108 |
Q |
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| T |
49927074 |
catcatcacatattcacgggtaatttccctttgaatttaaagatatagtaccaaatataatattgcaatctacctaacacaatggcacaaactcccaaaa |
49927173 |
T |
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| Q |
109 |
ctctatcaatatattttcaatttcaaccattaatcgtcacgtttcatctgcattagtactctatggtttatggcctctaattaaaaggggttttc |
203 |
Q |
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||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49927174 |
ctcaatcaatatattttcaatttcatccattaatcgtcacgtttcatctgcattagtactctatggtttatggcctcaaattaaaaggggttttc |
49927268 |
T |
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